RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 IGFL1Q6UW32 110 aa9.26□□□□□ -0.93
CLCNKA-201ENST00000331433 KRTAP21-3Q3LHN1 58 aa9.25□□□□□ -0.93
CLCNKA-201ENST00000331433 DPH3Q96FX2 82 aa9.25□□□□□ -0.93
CLCNKA-201ENST00000331433 TMEM258P61165 79 aa9.23□□□□□ -0.93
CLCNKA-201ENST00000331433 UBE2AP49459 152 aa9.23□□□□□ -0.93
CLCNKA-201ENST00000331433 LINC00474Q9P2X8 69 aa9.23□□□□□ -0.93
CLCNKA-201ENST00000331433 HECTD4Q9Y4D8 3996 aa9.23□□□□□ -0.93
CLCNKA-201ENST00000331433 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.22□□□□□ -0.93
CLCNKA-201ENST00000331433 PKIGQ9Y2B9 76 aa9.21□□□□□ -0.93
CLCNKA-201ENST00000331433 SNURFQ9Y675 71 aa9.21□□□□□ -0.93
CLCNKA-201ENST00000331433 DNAH2Q9P225 4427 aa9.2□□□□□ -0.94
CLCNKA-201ENST00000331433 H0Y9J4 135 aa9.2□□□□□ -0.94
CLCNKA-201ENST00000331433 A0A087WTM6 91 aa9.2□□□□□ -0.94
CLCNKA-201ENST00000331433 IGLV8-61A0A075B6I0 122 aa9.19□□□□□ -0.94
CLCNKA-201ENST00000331433 DSCR10P59022 87 aa9.19□□□□□ -0.94
CLCNKA-201ENST00000331433 SPACA4Q8TDM5 124 aa9.19□□□□□ -0.94
CLCNKA-201ENST00000331433 A0A087WSZ3 146 aa9.17□□□□□ -0.94
CLCNKA-201ENST00000331433 KLKP1Q107X0 134 aa9.17□□□□□ -0.94
CLCNKA-201ENST00000331433 K7EQZ3 153 aa9.16□□□□□ -0.94
CLCNKA-201ENST00000331433 DEFB116Q30KQ4 102 aa9.16□□□□□ -0.94
CLCNKA-201ENST00000331433 H7BZZ5 65 aa9.15□□□□□ -0.94
CLCNKA-201ENST00000331433 SPRR1BP22528 89 aa9.15□□□□□ -0.94
CLCNKA-201ENST00000331433 OCR1Q9BZK8 76 aa9.15□□□□□ -0.94
CLCNKA-201ENST00000331433 KRTAP13-1Q8IUC0 172 aa9.15□□□□□ -0.94
CLCNKA-201ENST00000331433 Q6ZR54 194 aa9.14□□□□□ -0.95
CLCNKA-201ENST00000331433 J3KT08 172 aa9.14□□□□□ -0.95
CLCNKA-201ENST00000331433 RTL8CO15255 209 aa9.13□□□□□ -0.95
CLCNKA-201ENST00000331433 TMEM254Q8TBM7 123 aa9.12□□□□□ -0.95
CLCNKA-201ENST00000331433 DNAH17Q9UFH2 4485 aa9.11□□□□□ -0.95
CLCNKA-201ENST00000331433 FRAS1Q86XX4 4008 aa9.11□□□□□ -0.95
CLCNKA-201ENST00000331433 FAM30AQ9NZY2 134 aa9.11□□□□□ -0.95
CLCNKA-201ENST00000331433 FAM236DA0A1B0GTK5 79 aa9.09□□□□□ -0.95
CLCNKA-201ENST00000331433 FAM236CP0DP71 79 aa9.09□□□□□ -0.95
CLCNKA-201ENST00000331433 RPS28P62857 69 aaKnown RBP9.09□□□□□ -0.95
CLCNKA-201ENST00000331433 OXTP01178 125 aa9.08□□□□□ -0.96
CLCNKA-201ENST00000331433 RPL37AP61513 92 aaKnown RBP9.07□□□□□ -0.96
CLCNKA-201ENST00000331433 DNAH8Q96JB1 4490 aa9.07□□□□□ -0.96
CLCNKA-201ENST00000331433 C1orf134Q5TEV5 83 aa9.06□□□□□ -0.96
CLCNKA-201ENST00000331433 HCG22E2RYF7 251 aa9.05□□□□□ -0.96
CLCNKA-201ENST00000331433 LY6G6CO95867 125 aa9.05□□□□□ -0.96
CLCNKA-201ENST00000331433 PSORS1C2Q9UIG4 136 aa9.05□□□□□ -0.96
CLCNKA-201ENST00000331433 IGLV5-52A0A0A0MRZ9 124 aa9.05□□□□□ -0.96
CLCNKA-201ENST00000331433 IGLV9-49A0A0B4J1Y8 123 aa9.05□□□□□ -0.96
CLCNKA-201ENST00000331433 A0A0U1RQV1 116 aa9.04□□□□□ -0.96
CLCNKA-201ENST00000331433 PLAC8Q9NZF1 115 aa9.03□□□□□ -0.96
CLCNKA-201ENST00000331433 NDUFC1O43677 76 aa9.02□□□□□ -0.97
CLCNKA-201ENST00000331433 WFDC13Q8IUB5 93 aa9.02□□□□□ -0.97
CLCNKA-201ENST00000331433 DNAH6Q9C0G6 4158 aa9.01□□□□□ -0.97
CLCNKA-201ENST00000331433 LINC00472Q9H8W2 130 aa9□□□□□ -0.97
CLCNKA-201ENST00000331433 ANAPC11Q9NYG5 84 aa8.99□□□□□ -0.97
CLCNKA-201ENST00000331433 LINC00483Q53H64 154 aa8.98□□□□□ -0.97
CLCNKA-201ENST00000331433 LCE6AA0A183 80 aa8.97□□□□□ -0.97
CLCNKA-201ENST00000331433 HRCT1Q6UXD1 115 aa8.97□□□□□ -0.97
CLCNKA-201ENST00000331433 DNAH5Q8TE73 4624 aa8.96□□□□□ -0.97
CLCNKA-201ENST00000331433 PRR15Q8IV56 129 aa8.96□□□□□ -0.97
CLCNKA-201ENST00000331433 ZNF861PO60384 105 aa8.96□□□□□ -0.98
CLCNKA-201ENST00000331433 A8MWP4 228 aa8.95□□□□□ -0.98
CLCNKA-201ENST00000331433 WWC2-AS2Q96NR7 200 aa8.95□□□□□ -0.98
CLCNKA-201ENST00000331433 ZNF706Q9Y5V0 76 aaPredicted RBP8.95□□□□□ -0.98
CLCNKA-201ENST00000331433 SERP1Q9Y6X1 66 aa8.95□□□□□ -0.98
CLCNKA-201ENST00000331433 DNAH11Q96DT5 4516 aa8.94□□□□□ -0.98
CLCNKA-201ENST00000331433 KRTAP29-1A8MX34 341 aaPredicted RBP8.94□□□□□ -0.98
CLCNKA-201ENST00000331433 MOBPQ13875 183 aa8.94□□□□□ -0.98
CLCNKA-201ENST00000331433 KRTAP10-2P60368 255 aa8.93□□□□□ -0.98
CLCNKA-201ENST00000331433 HYDINQ4G0P3 5121 aa8.92□□□□□ -0.98
CLCNKA-201ENST00000331433 CASC2Q6XLA1 102 aa8.92□□□□□ -0.98
CLCNKA-201ENST00000331433 C5orf47Q569G3 176 aa8.9□□□□□ -0.98
CLCNKA-201ENST00000331433 Q96NJ1 140 aa8.9□□□□□ -0.98
CLCNKA-201ENST00000331433 ATP5EP56381 51 aaPredicted RBP8.9□□□□□ -0.99
CLCNKA-201ENST00000331433 SVIPQ8NHG7 77 aa8.9□□□□□ -0.99
CLCNKA-201ENST00000331433 ZCCHC13Q8WW36 166 aaKnown RBP8.9□□□□□ -0.99
CLCNKA-201ENST00000331433 ALMS1Q8TCU4 4167 aa8.89□□□□□ -0.99
CLCNKA-201ENST00000331433 IGLV7-43P04211 117 aa8.88□□□□□ -0.99
CLCNKA-201ENST00000331433 CIRBP-AS1Q8TBR5 109 aa8.87□□□□□ -0.99
CLCNKA-201ENST00000331433 Q5XG85 94 aa8.87□□□□□ -0.99
CLCNKA-201ENST00000331433 MMP24-AS1A0A0U1RRL7 71 aa8.86□□□□□ -0.99
CLCNKA-201ENST00000331433 NDUFB1O75438 58 aa8.85□□□□□ -0.99
CLCNKA-201ENST00000331433 C4orf26Q17RF5 130 aa8.84□□□□□ -0.99
CLCNKA-201ENST00000331433 PKD1P98161 4303 aa8.84□□□□□ -1
CLCNKA-201ENST00000331433 FAT2Q9NYQ8 4349 aa8.83□□□□□ -1
CLCNKA-201ENST00000331433 MP68P56378 58 aa8.83□□□□□ -1
CLCNKA-201ENST00000331433 hDV103S1A0JD37 113 aa8.81□□□□□ -1
CLCNKA-201ENST00000331433 LINC00208Q96KT6 92 aa8.81□□□□□ -1
CLCNKA-201ENST00000331433 H0Y9P7 68 aa8.8□□□□□ -1
CLCNKA-201ENST00000331433 LRP1BQ9NZR2 4599 aa8.8□□□□□ -1
CLCNKA-201ENST00000331433 SACSQ9NZJ4 4579 aa8.8□□□□□ -1
CLCNKA-201ENST00000331433 KRTAP10-1P60331 282 aa8.8□□□□□ -1
CLCNKA-201ENST00000331433 IGHV6-1A0A0B4J1U7 121 aa8.79□□□□□ -1
CLCNKA-201ENST00000331433 FAM229BQ4G0N7 80 aa8.79□□□□□ -1
CLCNKA-201ENST00000331433 FP248Q71RG6 208 aaPredicted RBP8.79□□□□□ -1
CLCNKA-201ENST00000331433 PRR4Q16378 134 aa8.78□□□□□ -1
CLCNKA-201ENST00000331433 SMIM26A0A096LP01 95 aa8.77□□□□□ -1.01
CLCNKA-201ENST00000331433 C8orf17Q9NRJ1 99 aa8.77□□□□□ -1.01
CLCNKA-201ENST00000331433 TRAV22A0A0B4J277 110 aa8.77□□□□□ -1.01
CLCNKA-201ENST00000331433 A0A1B0GVX0 72 aa8.76□□□□□ -1.01
CLCNKA-201ENST00000331433 Q6ZSA8 131 aa8.76□□□□□ -1.01
CLCNKA-201ENST00000331433 ASB16-AS1Q495Z4 193 aa8.75□□□□□ -1.01
CLCNKA-201ENST00000331433 CDK2AP2O75956 126 aa8.75□□□□□ -1.01
CLCNKA-201ENST00000331433 SPINK6Q6UWN8 80 aa8.74□□□□□ -1.01
CLCNKA-201ENST00000331433 A0A087X002 238 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms