RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ARMS2P0C7Q2 107 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 BAALC-AS2P0C853 105 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 KRTAP12-1P59990 96 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 Q1T7F1 81 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 ZNF826PQ6ZT77 177 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 PHF5AQ7RTV0 110 aaKnown RBP1.29□□□□□ -2.2
HMGB1-201ENST00000326004 MUSTN1Q8IVN3 82 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 WFDC9Q8NEX5 89 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 DIRC1Q969H9 104 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 TTTY12Q9BZ98 90 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 ALPK2Q86TB3 2170 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 IGLV3-32A0A0A0MS00 114 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 TRAV22A0A0B4J277 110 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 LINC01546A6NGU7 62 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 F8VRH5 84 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 H3BRN7 92 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 I3L3M4 83 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 M0R1W7 72 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 NDUFC1O43677 76 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 DNAL4O96015 105 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 MIFP14174 115 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 KLKP1Q107X0 134 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 PIGYQ3MUY2 71 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 ATP11AUNQ6ZP68 121 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 VMO1Q7Z5L0 202 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 TMEM141Q96I45 108 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 LINC00846Q9NV44 126 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 NDUFA12Q9UI09 145 aa1.28□□□□□ -2.2
HMGB1-201ENST00000326004 HMCN2Q8NDA2 5059 aa1.28□□□□□ -2.21
HMGB1-201ENST00000326004 HMCN1Q96RW7 5635 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 DNAJC13O75165 2243 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 HEATR5BQ9P2D3 2071 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 TANC2Q9HCD6 1990 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 RNF213Q63HN8 5207 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 ALMS1Q8TCU4 4167 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 TRAV10A0A0B4J240 114 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 TRAV12-1A0A0B4J245 112 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 hDV103S1A0JD37 113 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 B4DSR2 109 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 HCG22E2RYF7 251 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 CHKB-CPT1BH3BT56 60 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 M0R3E3 92 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 BCE1O60756 84 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 PCOTHQ58A44 107 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 ATP5EP2Q5VTU8 51 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 ENHOQ6UWT2 76 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 PATE2Q6UY27 113 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 Q8IYB0 196 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 Q8N6K4 173 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 DYNLRB2Q8TF09 96 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 FAM167A-AS1Q96KT0 104 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 C22orf24Q9Y442 160 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 EXPH5Q8NEV8 1989 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 DNAH10Q8IVF4 4471 aa1.27□□□□□ -2.21
HMGB1-201ENST00000326004 IGIPA6NJ69 53 aa1.26□□□□□ -2.21
HMGB1-201ENST00000326004 Q86TA4 180 aa1.26□□□□□ -2.21
HMGB1-201ENST00000326004 MED12LQ86YW9 2145 aa1.26□□□□□ -2.21
HMGB1-201ENST00000326004 AMELXQ99217 191 aa1.26□□□□□ -2.21
HMGB1-201ENST00000326004 C14orf132Q9NPU4 83 aa1.26□□□□□ -2.21
HMGB1-201ENST00000326004 TMEM14BQ9NUH8 114 aa1.26□□□□□ -2.21
HMGB1-201ENST00000326004 STARD9Q9P2P6 4700 aa1.26□□□□□ -2.21
HMGB1-201ENST00000326004 HSPG2P98160 4391 aa1.26□□□□□ -2.21
HMGB1-201ENST00000326004 PLECQ15149 4684 aaKnown RBP1.25□□□□□ -2.21
HMGB1-201ENST00000326004 MED12Q93074 2177 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 SRRM2Q9UQ35 2752 aaKnown RBP1.25□□□□□ -2.21
HMGB1-201ENST00000326004 FREM3P0C091 2139 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 KIAA1549Q9HCM3 1950 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 TRAV21A0A0B4J279 112 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 NREPQ16612 68 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 DEFB110Q30KQ9 67 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 LELP1Q5T871 98 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 Q5VV11 94 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 C10orf113Q5VZT2 155 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 TMEM254Q8TBM7 123 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 LINC00467Q9BRT7 94 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 PRR15LQ9BU68 103 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 KMT2AQ03164 3969 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 SCN3AQ9NY46 2000 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 MYCBP2O75592 4640 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 DYNC1H1Q14204 4646 aaKnown RBP1.25□□□□□ -2.21
HMGB1-201ENST00000326004 ANKRD36A6QL64 1941 aa1.25□□□□□ -2.21
HMGB1-201ENST00000326004 TRBV7-4A0A0J9YYF1 115 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 TRBV6-1A0A0K0K1D8 114 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 TRBV10-3A0A0K0K1G6 114 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 NCR3O14931 201 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 IGLV3-1P01715 115 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 CRIP1P50238 77 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 C10orf128Q5T292 105 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 Q5VSD8 79 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 SPANXN1Q5VSR9 72 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 ZNF625Q96I27 306 aaPredicted RBP1.24□□□□□ -2.21
HMGB1-201ENST00000326004 OBSCN-AS1Q96MR7 158 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 RETNLBQ9BQ08 111 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 TMEM14CQ9P0S9 112 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 DNAH11Q96DT5 4516 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 PKHD1P08F94 4074 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 DNAH7Q8WXX0 4024 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 NINQ8N4C6 2090 aa1.24□□□□□ -2.21
HMGB1-201ENST00000326004 TRBV6-8A0A0A6YYG3 113 aa1.23□□□□□ -2.21
HMGB1-201ENST00000326004 ERC2-IT1O76042 136 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 160.8 ms