RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 HCG22E2RYF7 251 aa13.82□□□□□ -0.2
SHMT1-201ENST00000316694 DNAH9Q9NYC9 4486 aa13.81□□□□□ -0.2
SHMT1-201ENST00000316694 LCE6AA0A183 80 aa13.81□□□□□ -0.2
SHMT1-201ENST00000316694 A0A087WSZ3 146 aa13.81□□□□□ -0.2
SHMT1-201ENST00000316694 LINC00336Q6ZUF6 198 aa13.8□□□□□ -0.2
SHMT1-201ENST00000316694 SRRM2Q9UQ35 2752 aaKnown RBP13.79□□□□□ -0.2
SHMT1-201ENST00000316694 CNBPP62633 177 aaKnown RBP13.79□□□□□ -0.2
SHMT1-201ENST00000316694 CHTF8P0CG12 524 aa13.78□□□□□ -0.2
SHMT1-201ENST00000316694 UBE2AP49459 152 aa13.77□□□□□ -0.21
SHMT1-201ENST00000316694 MPLKIPQ8TAP9 179 aa13.77□□□□□ -0.21
SHMT1-201ENST00000316694 UBE2DNLQ8IWF7 75 aa13.76□□□□□ -0.21
SHMT1-201ENST00000316694 PHF5AQ7RTV0 110 aaKnown RBP13.75□□□□□ -0.21
SHMT1-201ENST00000316694 TENM2Q9NT68 2774 aa13.75□□□□□ -0.21
SHMT1-201ENST00000316694 WFDC13Q8IUB5 93 aa13.75□□□□□ -0.21
SHMT1-201ENST00000316694 KRTAP11-1Q8IUC1 163 aa13.74□□□□□ -0.21
SHMT1-201ENST00000316694 CSMD3Q7Z407 3707 aa13.74□□□□□ -0.21
SHMT1-201ENST00000316694 IGLV8-61A0A075B6I0 122 aa13.73□□□□□ -0.21
SHMT1-201ENST00000316694 RPL37AP61513 92 aaKnown RBP13.72□□□□□ -0.21
SHMT1-201ENST00000316694 ZCCHC13Q8WW36 166 aaKnown RBP13.72□□□□□ -0.21
SHMT1-201ENST00000316694 DNAH7Q8WXX0 4024 aa13.71□□□□□ -0.22
SHMT1-201ENST00000316694 PRO0628Q9UI54 55 aa13.66□□□□□ -0.22
SHMT1-201ENST00000316694 C14orf177Q52M58 125 aa13.65□□□□□ -0.22
SHMT1-201ENST00000316694 hDV103S1A0JD37 113 aa13.64□□□□□ -0.23
SHMT1-201ENST00000316694 LRCOL1A6NCL2 159 aa13.64□□□□□ -0.23
SHMT1-201ENST00000316694 PRR4Q16378 134 aa13.64□□□□□ -0.23
SHMT1-201ENST00000316694 APLNQ9ULZ1 77 aa13.63□□□□□ -0.23
SHMT1-201ENST00000316694 C1orf64Q8NEQ6 169 aa13.63□□□□□ -0.23
SHMT1-201ENST00000316694 H0Y9J4 135 aa13.59□□□□□ -0.23
SHMT1-201ENST00000316694 SPRR1BP22528 89 aa13.59□□□□□ -0.23
SHMT1-201ENST00000316694 MP68P56378 58 aa13.59□□□□□ -0.23
SHMT1-201ENST00000316694 BRK1Q8WUW1 75 aa13.58□□□□□ -0.24
SHMT1-201ENST00000316694 C9orf163Q8N9P6 203 aa13.57□□□□□ -0.24
SHMT1-201ENST00000316694 KRTAP29-1A8MX34 341 aaPredicted RBP13.57□□□□□ -0.24
SHMT1-201ENST00000316694 CASC2Q6XLA1 102 aa13.57□□□□□ -0.24
SHMT1-201ENST00000316694 B9D2Q9BPU9 175 aa13.57□□□□□ -0.24
SHMT1-201ENST00000316694 LINC00208Q96KT6 92 aa13.56□□□□□ -0.24
SHMT1-201ENST00000316694 PLECQ15149 4684 aaKnown RBP13.55□□□□□ -0.24
SHMT1-201ENST00000316694 PRR15Q8IV56 129 aa13.55□□□□□ -0.24
SHMT1-201ENST00000316694 DYNC2H1Q8NCM8 4307 aaKnown RBP13.53□□□□□ -0.24
SHMT1-201ENST00000316694 PANO1I0J062 215 aa13.53□□□□□ -0.24
SHMT1-201ENST00000316694 NDUFB1O75438 58 aa13.53□□□□□ -0.24
SHMT1-201ENST00000316694 LINC00472Q9H8W2 130 aa13.53□□□□□ -0.24
SHMT1-201ENST00000316694 A8MWP4 228 aa13.53□□□□□ -0.24
SHMT1-201ENST00000316694 TRAV22A0A0B4J277 110 aa13.51□□□□□ -0.25
SHMT1-201ENST00000316694 H0Y9P7 68 aa13.5□□□□□ -0.25
SHMT1-201ENST00000316694 CYP4F30PQ9H0H9 118 aa13.49□□□□□ -0.25
SHMT1-201ENST00000316694 MDFIQ99750 246 aa13.49□□□□□ -0.25
SHMT1-201ENST00000316694 NBDYA0A0U1RRE5 68 aa13.48□□□□□ -0.25
SHMT1-201ENST00000316694 PKIGQ9Y2B9 76 aa13.45□□□□□ -0.26
SHMT1-201ENST00000316694 KRTAP13-1Q8IUC0 172 aa13.44□□□□□ -0.26
SHMT1-201ENST00000316694 IGLV9-49A0A0B4J1Y8 123 aa13.44□□□□□ -0.26
SHMT1-201ENST00000316694 Q1T7F1 81 aa13.42□□□□□ -0.26
SHMT1-201ENST00000316694 Q6ZRN7 208 aaPredicted RBP13.41□□□□□ -0.26
SHMT1-201ENST00000316694 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.4□□□□□ -0.26
SHMT1-201ENST00000316694 MMP24-AS1A0A0U1RRL7 71 aa13.38□□□□□ -0.27
SHMT1-201ENST00000316694 H3BPC8 53 aa13.37□□□□□ -0.27
SHMT1-201ENST00000316694 PSPHP1O15172 72 aa13.37□□□□□ -0.27
SHMT1-201ENST00000316694 STARD9Q9P2P6 4700 aa13.37□□□□□ -0.27
SHMT1-201ENST00000316694 SPACA4Q8TDM5 124 aa13.36□□□□□ -0.27
SHMT1-201ENST00000316694 NUPR2A6NF83 97 aa13.32□□□□□ -0.28
SHMT1-201ENST00000316694 SPANXA2-OT1Q8N9U9 137 aa13.32□□□□□ -0.28
SHMT1-201ENST00000316694 Q96NJ1 140 aa13.31□□□□□ -0.28
SHMT1-201ENST00000316694 PRKDCP78527 4128 aaKnown RBP13.29□□□□□ -0.28
SHMT1-201ENST00000316694 VPS13DQ5THJ4 4388 aa13.27□□□□□ -0.29
SHMT1-201ENST00000316694 MOBPQ13875 183 aa13.26□□□□□ -0.29
SHMT1-201ENST00000316694 LINC00483Q53H64 154 aa13.25□□□□□ -0.29
SHMT1-201ENST00000316694 A0A087WTM6 91 aa13.24□□□□□ -0.29
SHMT1-201ENST00000316694 ANAPC11Q9NYG5 84 aa13.24□□□□□ -0.29
SHMT1-201ENST00000316694 KMT2AQ03164 3969 aa13.24□□□□□ -0.29
SHMT1-201ENST00000316694 A8MUN3 132 aa13.23□□□□□ -0.29
SHMT1-201ENST00000316694 PSORS1C2Q9UIG4 136 aa13.23□□□□□ -0.29
SHMT1-201ENST00000316694 IGHV6-1A0A0B4J1U7 121 aa13.22□□□□□ -0.29
SHMT1-201ENST00000316694 HECTD4Q9Y4D8 3996 aa13.22□□□□□ -0.29
SHMT1-201ENST00000316694 C8orf17Q9NRJ1 99 aa13.22□□□□□ -0.29
SHMT1-201ENST00000316694 ZNF706Q9Y5V0 76 aaPredicted RBP13.21□□□□□ -0.29
SHMT1-201ENST00000316694 V9GYY9 64 aa13.21□□□□□ -0.29
SHMT1-201ENST00000316694 PCOTHQ58A44 107 aa13.2□□□□□ -0.3
SHMT1-201ENST00000316694 WWC2-AS2Q96NR7 200 aa13.2□□□□□ -0.3
SHMT1-201ENST00000316694 RTL8CO15255 209 aa13.19□□□□□ -0.3
SHMT1-201ENST00000316694 NDUFS5O43920 106 aa13.19□□□□□ -0.3
SHMT1-201ENST00000316694 IGLV5-52A0A0A0MRZ9 124 aa13.18□□□□□ -0.3
SHMT1-201ENST00000316694 ASB16-AS1Q495Z4 193 aa13.18□□□□□ -0.3
SHMT1-201ENST00000316694 TP53AIP1Q9HCN2 124 aa13.18□□□□□ -0.3
SHMT1-201ENST00000316694 FRAS1Q86XX4 4008 aa13.17□□□□□ -0.3
SHMT1-201ENST00000316694 A0A1B0GVX0 72 aa13.17□□□□□ -0.3
SHMT1-201ENST00000316694 CDK2AP2O75956 126 aa13.16□□□□□ -0.3
SHMT1-201ENST00000316694 C1orf195Q5TG92 126 aa13.16□□□□□ -0.3
SHMT1-201ENST00000316694 DNAH2Q9P225 4427 aa13.16□□□□□ -0.3
SHMT1-201ENST00000316694 IGLV7-46A0A075B6I9 117 aa13.14□□□□□ -0.31
SHMT1-201ENST00000316694 Q8N9P0 234 aaPredicted RBP13.14□□□□□ -0.31
SHMT1-201ENST00000316694 COA5Q86WW8 74 aa13.13□□□□□ -0.31
SHMT1-201ENST00000316694 ZNF861PO60384 105 aa13.12□□□□□ -0.31
SHMT1-201ENST00000316694 CD164Q04900 197 aa13.12□□□□□ -0.31
SHMT1-201ENST00000316694 Q5VV11 94 aa13.11□□□□□ -0.31
SHMT1-201ENST00000316694 MEGF8Q7Z7M0 2845 aa13.11□□□□□ -0.31
SHMT1-201ENST00000316694 TGP01266 2768 aa13.1□□□□□ -0.31
SHMT1-201ENST00000316694 Q6ZR54 194 aa13.1□□□□□ -0.31
SHMT1-201ENST00000316694 PLAC8Q9NZF1 115 aa13.1□□□□□ -0.31
SHMT1-201ENST00000316694 A0A087X002 238 aa13.09□□□□□ -0.31
SHMT1-201ENST00000316694 NOTCH2NLQ7Z3S9 236 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms