RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 A0A087WSZ3 146 aa8.59□□□□□ -1.03
SKA3-201ENST00000298260 KRTAP7-1Q8IUC3 87 aa8.59□□□□□ -1.03
SKA3-201ENST00000298260 KRTAP4-16G5E9R7 235 aaPredicted RBP8.59□□□□□ -1.03
SKA3-201ENST00000298260 MP68P56378 58 aa8.58□□□□□ -1.04
SKA3-201ENST00000298260 CD164Q04900 197 aa8.58□□□□□ -1.04
SKA3-201ENST00000298260 KRTAP24-1Q3LI83 254 aa8.58□□□□□ -1.04
SKA3-201ENST00000298260 DHRS4-AS1Q9P1J3 65 aa8.58□□□□□ -1.04
SKA3-201ENST00000298260 CASC10Q5T4H9 136 aa8.58□□□□□ -1.04
SKA3-201ENST00000298260 RBM12B-AS1Q9P1G2 102 aa8.58□□□□□ -1.04
SKA3-201ENST00000298260 LINC00588Q9Y4M8 146 aa8.58□□□□□ -1.04
SKA3-201ENST00000298260 IGLV1-50A0A075B6I6 118 aa8.56□□□□□ -1.04
SKA3-201ENST00000298260 IGFL1Q6UW32 110 aa8.56□□□□□ -1.04
SKA3-201ENST00000298260 H0Y9P7 68 aa8.56□□□□□ -1.04
SKA3-201ENST00000298260 APOC4P55056 127 aa8.55□□□□□ -1.04
SKA3-201ENST00000298260 A6NED7 52 aa8.54□□□□□ -1.04
SKA3-201ENST00000298260 COL7A1Q02388 2944 aa8.54□□□□□ -1.04
SKA3-201ENST00000298260 NDUFB1O75438 58 aa8.54□□□□□ -1.04
SKA3-201ENST00000298260 UBE2AP49459 152 aa8.54□□□□□ -1.04
SKA3-201ENST00000298260 MRPL55Q7Z7F7 128 aaKnown RBP8.54□□□□□ -1.04
SKA3-201ENST00000298260 PRLHP81277 87 aa8.53□□□□□ -1.04
SKA3-201ENST00000298260 OXLD1Q5BKU9 147 aa8.53□□□□□ -1.04
SKA3-201ENST00000298260 KTN1-AS1Q86SY8 53 aa8.52□□□□□ -1.05
SKA3-201ENST00000298260 A0A096LNI7 61 aa8.5□□□□□ -1.05
SKA3-201ENST00000298260 PCOTHQ58A44 107 aa8.5□□□□□ -1.05
SKA3-201ENST00000298260 SPRR1AP35321 89 aa8.49□□□□□ -1.05
SKA3-201ENST00000298260 CASC2Q6XLA1 102 aa8.49□□□□□ -1.05
SKA3-201ENST00000298260 CMYA5Q8N3K9 4069 aa8.49□□□□□ -1.05
SKA3-201ENST00000298260 A0A1B0GW54 56 aa8.49□□□□□ -1.05
SKA3-201ENST00000298260 KRTAP29-1A8MX34 341 aaPredicted RBP8.48□□□□□ -1.05
SKA3-201ENST00000298260 COA5Q86WW8 74 aa8.48□□□□□ -1.05
SKA3-201ENST00000298260 SPAG11AQ6PDA7 123 aa8.48□□□□□ -1.05
SKA3-201ENST00000298260 LIMD2Q9BT23 127 aa8.48□□□□□ -1.05
SKA3-201ENST00000298260 CNBPP62633 177 aaKnown RBP8.47□□□□□ -1.05
SKA3-201ENST00000298260 TENM2Q9NT68 2774 aa8.46□□□□□ -1.06
SKA3-201ENST00000298260 A6NN06 94 aa8.44□□□□□ -1.06
SKA3-201ENST00000298260 REG3GQ6UW15 175 aa8.44□□□□□ -1.06
SKA3-201ENST00000298260 IGKV2-24A0A0C4DH68 120 aa8.44□□□□□ -1.06
SKA3-201ENST00000298260 C9orf163Q8N9P6 203 aa8.43□□□□□ -1.06
SKA3-201ENST00000298260 STAB2Q8WWQ8 2551 aa8.42□□□□□ -1.06
SKA3-201ENST00000298260 ATP11AUNQ6ZP68 121 aa8.42□□□□□ -1.06
SKA3-201ENST00000298260 Q75L30 129 aa8.42□□□□□ -1.06
SKA3-201ENST00000298260 H0Y9J4 135 aa8.41□□□□□ -1.06
SKA3-201ENST00000298260 SPANXA2-OT1Q8N9U9 137 aa8.41□□□□□ -1.06
SKA3-201ENST00000298260 SPINK7P58062 85 aa8.4□□□□□ -1.06
SKA3-201ENST00000298260 MOBPQ13875 183 aa8.39□□□□□ -1.07
SKA3-201ENST00000298260 LINC01556Q5JQF7 62 aa8.39□□□□□ -1.07
SKA3-201ENST00000298260 MDFIQ99750 246 aa8.39□□□□□ -1.07
SKA3-201ENST00000298260 DNHD1Q96M86 4753 aa8.39□□□□□ -1.07
SKA3-201ENST00000298260 KRTAP10-11P60412 298 aa8.39□□□□□ -1.07
SKA3-201ENST00000298260 LOC101927531A0A1B0GV80 90 aa8.37□□□□□ -1.07
SKA3-201ENST00000298260 TLX1NBP0CAT3 122 aa8.37□□□□□ -1.07
SKA3-201ENST00000298260 PLA2G2DQ9UNK4 145 aa8.37□□□□□ -1.07
SKA3-201ENST00000298260 C11orf45Q8TAV5 145 aa8.36□□□□□ -1.07
SKA3-201ENST00000298260 DNAH10Q8IVF4 4471 aa8.36□□□□□ -1.07
SKA3-201ENST00000298260 IGLV5-37A0A075B6J1 123 aa8.36□□□□□ -1.07
SKA3-201ENST00000298260 DEFB131BA0A096LNP1 70 aa8.36□□□□□ -1.07
SKA3-201ENST00000298260 KRTAP11-1Q8IUC1 163 aa8.36□□□□□ -1.07
SKA3-201ENST00000298260 CDC42SE1Q9NRR8 79 aa8.35□□□□□ -1.07
SKA3-201ENST00000298260 A8MWP4 228 aa8.34□□□□□ -1.07
SKA3-201ENST00000298260 LYSTQ99698 3801 aa8.34□□□□□ -1.07
SKA3-201ENST00000298260 PRAC1Q96KF2 57 aa8.34□□□□□ -1.07
SKA3-201ENST00000298260 LINC00472Q9H8W2 130 aa8.34□□□□□ -1.07
SKA3-201ENST00000298260 IGLV7-46A0A075B6I9 117 aa8.33□□□□□ -1.08
SKA3-201ENST00000298260 PHF5AQ7RTV0 110 aaKnown RBP8.33□□□□□ -1.08
SKA3-201ENST00000298260 MMP24-AS1A0A0U1RRL7 71 aa8.32□□□□□ -1.08
SKA3-201ENST00000298260 NDUFS5O43920 106 aa8.31□□□□□ -1.08
SKA3-201ENST00000298260 TGP01266 2768 aa8.31□□□□□ -1.08
SKA3-201ENST00000298260 C7orf65Q6ZTY9 151 aa8.3□□□□□ -1.08
SKA3-201ENST00000298260 CHTF8P0CG12 524 aa8.3□□□□□ -1.08
SKA3-201ENST00000298260 ADM2Q7Z4H4 148 aa8.3□□□□□ -1.08
SKA3-201ENST00000298260 H3BNG1 76 aa8.3□□□□□ -1.08
SKA3-201ENST00000298260 H3BPC8 53 aa8.3□□□□□ -1.08
SKA3-201ENST00000298260 HRES1P13985 223 aa8.28□□□□□ -1.08
SKA3-201ENST00000298260 IGLV8-61A0A075B6I0 122 aa8.28□□□□□ -1.08
SKA3-201ENST00000298260 DNAH10OSP0CZ25 163 aa8.28□□□□□ -1.08
SKA3-201ENST00000298260 PRR26Q8N8Z3 221 aa8.27□□□□□ -1.09
SKA3-201ENST00000298260 LINC01558Q9Y6Z2 57 aa8.27□□□□□ -1.09
SKA3-201ENST00000298260 K7EIL1 84 aa8.26□□□□□ -1.09
SKA3-201ENST00000298260 MEGF8Q7Z7M0 2845 aa8.25□□□□□ -1.09
SKA3-201ENST00000298260 PLAC8Q9NZF1 115 aa8.24□□□□□ -1.09
SKA3-201ENST00000298260 DNAH3Q8TD57 4116 aa8.23□□□□□ -1.09
SKA3-201ENST00000298260 LINC00313P59037 77 aa8.23□□□□□ -1.09
SKA3-201ENST00000298260 IGLV9-49A0A0B4J1Y8 123 aa8.22□□□□□ -1.09
SKA3-201ENST00000298260 IGHV6-1A0A0B4J1U7 121 aa8.21□□□□□ -1.09
SKA3-201ENST00000298260 A0A087X002 238 aa8.21□□□□□ -1.1
SKA3-201ENST00000298260 C8orf87E5RJ46 101 aa8.21□□□□□ -1.1
SKA3-201ENST00000298260 NOTCH2NLQ7Z3S9 236 aa8.21□□□□□ -1.1
SKA3-201ENST00000298260 DNAH1Q9P2D7 4330 aa8.2□□□□□ -1.1
SKA3-201ENST00000298260 HUWE1Q7Z6Z7 4374 aaKnown RBP8.18□□□□□ -1.1
SKA3-201ENST00000298260 KRTAP21-3Q3LHN1 58 aa8.18□□□□□ -1.1
SKA3-201ENST00000298260 Q96NJ1 140 aa8.18□□□□□ -1.1
SKA3-201ENST00000298260 PRKDCP78527 4128 aaKnown RBP8.17□□□□□ -1.1
SKA3-201ENST00000298260 KRTAP1-5Q9BYS1 174 aa8.16□□□□□ -1.1
SKA3-201ENST00000298260 C8orf17Q9NRJ1 99 aa8.16□□□□□ -1.1
SKA3-201ENST00000298260 DNAH9Q9NYC9 4486 aa8.14□□□□□ -1.11
SKA3-201ENST00000298260 ANAPC11Q9NYG5 84 aa8.13□□□□□ -1.11
SKA3-201ENST00000298260 C4orf48Q5BLP8 95 aa8.12□□□□□ -1.11
SKA3-201ENST00000298260 Q6ZR54 194 aa8.12□□□□□ -1.11
SKA3-201ENST00000298260 PANO1I0J062 215 aa8.12□□□□□ -1.11
SKA3-201ENST00000298260 Q5W150 140 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms