RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 DYNC1H1Q14204 4646 aaKnown RBP10.08□□□□□ -0.8
USP4-201ENST00000265560 LOC110117498A0A087WWA1 95 aa10.08□□□□□ -0.8
USP4-201ENST00000265560 IGKV3D-7A0A0C4DH55 119 aa10.08□□□□□ -0.8
USP4-201ENST00000265560 H3BQ85 93 aa10.08□□□□□ -0.8
USP4-201ENST00000265560 H0Y9J4 135 aa10.05□□□□□ -0.8
USP4-201ENST00000265560 Q6ZSA8 131 aa10.03□□□□□ -0.8
USP4-201ENST00000265560 C21orf62-AS1Q17RA5 79 aa10.03□□□□□ -0.8
USP4-201ENST00000265560 A0A1W2PNM2 257 aa10.02□□□□□ -0.81
USP4-201ENST00000265560 F8WEM9 126 aa10.02□□□□□ -0.81
USP4-201ENST00000265560 FAT1Q14517 4588 aa10.02□□□□□ -0.81
USP4-201ENST00000265560 IGLV9-49A0A0B4J1Y8 123 aa10.02□□□□□ -0.81
USP4-201ENST00000265560 LINC00643Q86TS7 51 aa10.01□□□□□ -0.81
USP4-201ENST00000265560 PCP4P48539 62 aa10□□□□□ -0.81
USP4-201ENST00000265560 ZNF861PO60384 105 aa10□□□□□ -0.81
USP4-201ENST00000265560 SMR3BP02814 79 aaPredicted RBP10□□□□□ -0.81
USP4-201ENST00000265560 IGFL1Q6UW32 110 aa9.99□□□□□ -0.81
USP4-201ENST00000265560 IGLV7-43P04211 117 aa9.99□□□□□ -0.81
USP4-201ENST00000265560 PDE6GP18545 87 aa9.99□□□□□ -0.81
USP4-201ENST00000265560 Q6ZVQ6 151 aa9.98□□□□□ -0.81
USP4-201ENST00000265560 UBL5Q9BZL1 73 aa9.98□□□□□ -0.81
USP4-201ENST00000265560 SPRR4Q96PI1 79 aa9.97□□□□□ -0.81
USP4-201ENST00000265560 A0A087WVE0 104 aa9.96□□□□□ -0.81
USP4-201ENST00000265560 LINC00336Q6ZUF6 198 aa9.96□□□□□ -0.81
USP4-201ENST00000265560 A0A1B0GVY2 172 aa9.96□□□□□ -0.82
USP4-201ENST00000265560 C9orf153Q5TBE3 101 aa9.94□□□□□ -0.82
USP4-201ENST00000265560 HIST1H4AP62805 103 aaKnown RBP9.94□□□□□ -0.82
USP4-201ENST00000265560 HRCT1Q6UXD1 115 aa9.93□□□□□ -0.82
USP4-201ENST00000265560 APOBP04114 4563 aaKnown RBP9.93□□□□□ -0.82
USP4-201ENST00000265560 Q8NBF4 154 aa9.93□□□□□ -0.82
USP4-201ENST00000265560 SPRR1BP22528 89 aa9.92□□□□□ -0.82
USP4-201ENST00000265560 DEFB116Q30KQ4 102 aa9.92□□□□□ -0.82
USP4-201ENST00000265560 Q8N9L7 120 aa9.91□□□□□ -0.82
USP4-201ENST00000265560 Q6JHZ5 121 aa9.9□□□□□ -0.82
USP4-201ENST00000265560 NREPQ16612 68 aa9.9□□□□□ -0.82
USP4-201ENST00000265560 A0A087WSZ3 146 aa9.89□□□□□ -0.83
USP4-201ENST00000265560 TRBV7-7A0A0K0K1E9 115 aa9.89□□□□□ -0.83
USP4-201ENST00000265560 MOBPQ13875 183 aa9.89□□□□□ -0.83
USP4-201ENST00000265560 FAM236AA0A1B0GUQ0 79 aa9.87□□□□□ -0.83
USP4-201ENST00000265560 FAM236BA0A1B0GV22 79 aa9.87□□□□□ -0.83
USP4-201ENST00000265560 IGLV8-61A0A075B6I0 122 aa9.85□□□□□ -0.83
USP4-201ENST00000265560 CRYGAP11844 174 aa9.85□□□□□ -0.83
USP4-201ENST00000265560 LINC00483Q53H64 154 aa9.85□□□□□ -0.83
USP4-201ENST00000265560 ZNF706Q9Y5V0 76 aaPredicted RBP9.85□□□□□ -0.83
USP4-201ENST00000265560 A0A087X002 238 aa9.82□□□□□ -0.84
USP4-201ENST00000265560 BPY2O14599 106 aa9.81□□□□□ -0.84
USP4-201ENST00000265560 Q6Q795 121 aa9.81□□□□□ -0.84
USP4-201ENST00000265560 SCGB1A1P11684 91 aa9.8□□□□□ -0.84
USP4-201ENST00000265560 IMUPQ9GZP8 106 aa9.79□□□□□ -0.84
USP4-201ENST00000265560 RPL37AP61513 92 aaKnown RBP9.78□□□□□ -0.84
USP4-201ENST00000265560 ANAPC13Q9BS18 74 aa9.76□□□□□ -0.85
USP4-201ENST00000265560 EPPK1P58107 5090 aaKnown RBP9.76□□□□□ -0.85
USP4-201ENST00000265560 ATP5EP2Q5VTU8 51 aa9.76□□□□□ -0.85
USP4-201ENST00000265560 CXCL6P80162 114 aa9.74□□□□□ -0.85
USP4-201ENST00000265560 KRTAP13-2Q52LG2 175 aa9.73□□□□□ -0.85
USP4-201ENST00000265560 KIAA1109Q2LD37 5005 aa9.73□□□□□ -0.85
USP4-201ENST00000265560 FLG2Q5D862 2391 aaPredicted RBP9.73□□□□□ -0.85
USP4-201ENST00000265560 KRTAP1-4P0C5Y4 121 aa9.72□□□□□ -0.85
USP4-201ENST00000265560 HSPG2P98160 4391 aa9.72□□□□□ -0.85
USP4-201ENST00000265560 PLA2G1BP04054 148 aaKnown RBP9.72□□□□□ -0.85
USP4-201ENST00000265560 DSCR10P59022 87 aa9.71□□□□□ -0.85
USP4-201ENST00000265560 K7EQZ3 153 aa9.71□□□□□ -0.85
USP4-201ENST00000265560 IGKV4-1P06312 121 aa9.7□□□□□ -0.86
USP4-201ENST00000265560 A0A1B0GW54 56 aa9.69□□□□□ -0.86
USP4-201ENST00000265560 PRR26Q8N8Z3 221 aa9.65□□□□□ -0.86
USP4-201ENST00000265560 SPINK6Q6UWN8 80 aa9.65□□□□□ -0.86
USP4-201ENST00000265560 LINC00472Q9H8W2 130 aa9.65□□□□□ -0.87
USP4-201ENST00000265560 LRP1Q07954 4544 aaKnown RBP9.64□□□□□ -0.87
USP4-201ENST00000265560 CCDC179H3BU77 68 aa9.64□□□□□ -0.87
USP4-201ENST00000265560 KRTAP10-4P60372 401 aaPredicted RBP9.64□□□□□ -0.87
USP4-201ENST00000265560 KRTAP17-1Q9BYP8 105 aa9.62□□□□□ -0.87
USP4-201ENST00000265560 Q96NJ1 140 aa9.61□□□□□ -0.87
USP4-201ENST00000265560 RYR1P21817 5038 aa9.6□□□□□ -0.87
USP4-201ENST00000265560 SSBP3-AS1Q7Z2R9 100 aa9.6□□□□□ -0.87
USP4-201ENST00000265560 WFDC13Q8IUB5 93 aa9.6□□□□□ -0.87
USP4-201ENST00000265560 ATOX1O00244 68 aa9.59□□□□□ -0.87
USP4-201ENST00000265560 TYMSOSQ8TAI1 123 aa9.59□□□□□ -0.87
USP4-201ENST00000265560 FAM229BQ4G0N7 80 aa9.57□□□□□ -0.88
USP4-201ENST00000265560 PKHD1L1Q86WI1 4243 aa9.55□□□□□ -0.88
USP4-201ENST00000265560 DMBT1Q9UGM3 2413 aaPredicted RBP9.54□□□□□ -0.88
USP4-201ENST00000265560 SS18L2Q9UHA2 77 aa9.54□□□□□ -0.88
USP4-201ENST00000265560 MYCBP2O75592 4640 aa9.54□□□□□ -0.88
USP4-201ENST00000265560 Q5VSD8 79 aa9.53□□□□□ -0.88
USP4-201ENST00000265560 FAM229AH3BQW9 127 aa9.53□□□□□ -0.88
USP4-201ENST00000265560 IGHV6-1A0A0B4J1U7 121 aa9.52□□□□□ -0.89
USP4-201ENST00000265560 A8MWP4 228 aa9.52□□□□□ -0.89
USP4-201ENST00000265560 PRR15Q8IV56 129 aa9.52□□□□□ -0.89
USP4-201ENST00000265560 NOTCH2NLQ7Z3S9 236 aa9.51□□□□□ -0.89
USP4-201ENST00000265560 HCG22E2RYF7 251 aa9.5□□□□□ -0.89
USP4-201ENST00000265560 SERP2Q8N6R1 65 aa9.5□□□□□ -0.89
USP4-201ENST00000265560 C4orf48Q5BLP8 95 aa9.49□□□□□ -0.89
USP4-201ENST00000265560 COX7CP15954 63 aa9.49□□□□□ -0.89
USP4-201ENST00000265560 CYSTM1Q9H1C7 97 aa9.48□□□□□ -0.89
USP4-201ENST00000265560 NDUFB1O75438 58 aa9.47□□□□□ -0.89
USP4-201ENST00000265560 CD164Q04900 197 aa9.47□□□□□ -0.89
USP4-201ENST00000265560 CDK2AP2O75956 126 aa9.46□□□□□ -0.89
USP4-201ENST00000265560 CASC2Q6XLA1 102 aa9.45□□□□□ -0.9
USP4-201ENST00000265560 C20orf197Q8N268 126 aa9.45□□□□□ -0.9
USP4-201ENST00000265560 LINC00304Q8N9R0 145 aa9.45□□□□□ -0.9
USP4-201ENST00000265560 J3KT08 172 aa9.44□□□□□ -0.9
USP4-201ENST00000265560 UQCRQO14949 82 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 170 ms