RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 FAM240AA0A1B0GVK7 77 aa13.86□□□□□ -0.19
SMARCB1-201ENST00000263121 CCKP06307 115 aa13.85□□□□□ -0.19
SMARCB1-201ENST00000263121 ZNF706Q9Y5V0 76 aaPredicted RBP13.85□□□□□ -0.19
SMARCB1-201ENST00000263121 SRRM2Q9UQ35 2752 aaKnown RBP13.85□□□□□ -0.19
SMARCB1-201ENST00000263121 PDE6GP18545 87 aa13.84□□□□□ -0.19
SMARCB1-201ENST00000263121 LINC00483Q53H64 154 aa13.83□□□□□ -0.2
SMARCB1-201ENST00000263121 ACYP1P07311 99 aa13.81□□□□□ -0.2
SMARCB1-201ENST00000263121 F8WEM9 126 aa13.8□□□□□ -0.2
SMARCB1-201ENST00000263121 IGLV8-61A0A075B6I0 122 aa13.79□□□□□ -0.2
SMARCB1-201ENST00000263121 VPS13BQ7Z7G8 4022 aa13.78□□□□□ -0.2
SMARCB1-201ENST00000263121 CDIP1Q9H305 208 aa13.78□□□□□ -0.2
SMARCB1-201ENST00000263121 RPL37AP61513 92 aaKnown RBP13.77□□□□□ -0.21
SMARCB1-201ENST00000263121 C21orf62-AS1Q17RA5 79 aa13.76□□□□□ -0.21
SMARCB1-201ENST00000263121 SMR3BP02814 79 aaPredicted RBP13.75□□□□□ -0.21
SMARCB1-201ENST00000263121 VPS25Q9BRG1 176 aa13.74□□□□□ -0.21
SMARCB1-201ENST00000263121 IGFL1Q6UW32 110 aa13.71□□□□□ -0.21
SMARCB1-201ENST00000263121 LINC00846Q9NV44 126 aa13.7□□□□□ -0.22
SMARCB1-201ENST00000263121 ANAPC11Q9NYG5 84 aa13.7□□□□□ -0.22
SMARCB1-201ENST00000263121 A0A1W2PNM2 257 aa13.69□□□□□ -0.22
SMARCB1-201ENST00000263121 Q6JHZ5 121 aa13.68□□□□□ -0.22
SMARCB1-201ENST00000263121 CDK2AP2O75956 126 aa13.67□□□□□ -0.22
SMARCB1-201ENST00000263121 KRTAP10-4P60372 401 aaPredicted RBP13.67□□□□□ -0.22
SMARCB1-201ENST00000263121 Q8NBF4 154 aa13.67□□□□□ -0.22
SMARCB1-201ENST00000263121 IGLV9-49A0A0B4J1Y8 123 aa13.66□□□□□ -0.22
SMARCB1-201ENST00000263121 A0A0G2JQZ4 141 aa13.66□□□□□ -0.22
SMARCB1-201ENST00000263121 SPINK6Q6UWN8 80 aa13.63□□□□□ -0.23
SMARCB1-201ENST00000263121 C9orf153Q5TBE3 101 aa13.63□□□□□ -0.23
SMARCB1-201ENST00000263121 A0A1B0GW54 56 aa13.62□□□□□ -0.23
SMARCB1-201ENST00000263121 FAT1Q14517 4588 aa13.62□□□□□ -0.23
SMARCB1-201ENST00000263121 KRTAP1-4P0C5Y4 121 aa13.6□□□□□ -0.23
SMARCB1-201ENST00000263121 MOBPQ13875 183 aa13.59□□□□□ -0.23
SMARCB1-201ENST00000263121 CRYGAP11844 174 aa13.59□□□□□ -0.23
SMARCB1-201ENST00000263121 FAM229BQ4G0N7 80 aa13.59□□□□□ -0.23
SMARCB1-201ENST00000263121 LINC00643Q86TS7 51 aa13.57□□□□□ -0.24
SMARCB1-201ENST00000263121 HSPG2P98160 4391 aa13.57□□□□□ -0.24
SMARCB1-201ENST00000263121 Q6Q795 121 aa13.56□□□□□ -0.24
SMARCB1-201ENST00000263121 UBL5Q9BZL1 73 aa13.56□□□□□ -0.24
SMARCB1-201ENST00000263121 A0A087X002 238 aa13.54□□□□□ -0.24
SMARCB1-201ENST00000263121 MT-ATP8P03928 68 aa13.54□□□□□ -0.24
SMARCB1-201ENST00000263121 Q6ZVQ6 151 aa13.53□□□□□ -0.24
SMARCB1-201ENST00000263121 SIGMAR1Q99720 223 aa13.53□□□□□ -0.24
SMARCB1-201ENST00000263121 RYR1P21817 5038 aa13.53□□□□□ -0.24
SMARCB1-201ENST00000263121 EPPK1P58107 5090 aaKnown RBP13.53□□□□□ -0.24
SMARCB1-201ENST00000263121 FAM229AH3BQW9 127 aa13.52□□□□□ -0.25
SMARCB1-201ENST00000263121 PLA2G1BP04054 148 aaKnown RBP13.52□□□□□ -0.25
SMARCB1-201ENST00000263121 KRTAP13-2Q52LG2 175 aa13.51□□□□□ -0.25
SMARCB1-201ENST00000263121 TRBV7-7A0A0K0K1E9 115 aa13.49□□□□□ -0.25
SMARCB1-201ENST00000263121 SSBP3-AS1Q7Z2R9 100 aa13.49□□□□□ -0.25
SMARCB1-201ENST00000263121 A0A087WSZ3 146 aa13.47□□□□□ -0.25
SMARCB1-201ENST00000263121 NREPQ16612 68 aa13.46□□□□□ -0.26
SMARCB1-201ENST00000263121 Q5VSD8 79 aa13.46□□□□□ -0.26
SMARCB1-201ENST00000263121 PKHD1L1Q86WI1 4243 aa13.46□□□□□ -0.26
SMARCB1-201ENST00000263121 ATP5EP2Q5VTU8 51 aa13.44□□□□□ -0.26
SMARCB1-201ENST00000263121 IGKV3D-7A0A0C4DH55 119 aa13.41□□□□□ -0.26
SMARCB1-201ENST00000263121 HRCT1Q6UXD1 115 aa13.4□□□□□ -0.26
SMARCB1-201ENST00000263121 KRTAP17-1Q9BYP8 105 aa13.4□□□□□ -0.26
SMARCB1-201ENST00000263121 CD164Q04900 197 aa13.4□□□□□ -0.26
SMARCB1-201ENST00000263121 KIAA1109Q2LD37 5005 aa13.39□□□□□ -0.27
SMARCB1-201ENST00000263121 CXCL6P80162 114 aa13.37□□□□□ -0.27
SMARCB1-201ENST00000263121 PRR26Q8N8Z3 221 aa13.35□□□□□ -0.27
SMARCB1-201ENST00000263121 IMUPQ9GZP8 106 aa13.35□□□□□ -0.27
SMARCB1-201ENST00000263121 Q8N1X5 172 aa13.34□□□□□ -0.27
SMARCB1-201ENST00000263121 TYMSOSQ8TAI1 123 aa13.34□□□□□ -0.27
SMARCB1-201ENST00000263121 BPY2O14599 106 aa13.32□□□□□ -0.28
SMARCB1-201ENST00000263121 SS18L2Q9UHA2 77 aa13.31□□□□□ -0.28
SMARCB1-201ENST00000263121 LINC00472Q9H8W2 130 aa13.3□□□□□ -0.28
SMARCB1-201ENST00000263121 Q96NJ1 140 aa13.25□□□□□ -0.29
SMARCB1-201ENST00000263121 DEFB116Q30KQ4 102 aa13.24□□□□□ -0.29
SMARCB1-201ENST00000263121 DSCR10P59022 87 aa13.24□□□□□ -0.29
SMARCB1-201ENST00000263121 HIST1H4AP62805 103 aaKnown RBP13.24□□□□□ -0.29
SMARCB1-201ENST00000263121 SCGB1A1P11684 91 aa13.21□□□□□ -0.29
SMARCB1-201ENST00000263121 Q5XG85 94 aa13.21□□□□□ -0.29
SMARCB1-201ENST00000263121 A0A087WVE0 104 aa13.21□□□□□ -0.3
SMARCB1-201ENST00000263121 ASB16-AS1Q495Z4 193 aa13.2□□□□□ -0.3
SMARCB1-201ENST00000263121 C4orf48Q5BLP8 95 aa13.2□□□□□ -0.3
SMARCB1-201ENST00000263121 Q8N9L7 120 aa13.2□□□□□ -0.3
SMARCB1-201ENST00000263121 LINC00304Q8N9R0 145 aa13.2□□□□□ -0.3
SMARCB1-201ENST00000263121 IGKV4-1P06312 121 aa13.19□□□□□ -0.3
SMARCB1-201ENST00000263121 SPINK1P00995 79 aa13.18□□□□□ -0.3
SMARCB1-201ENST00000263121 J3KT08 172 aa13.17□□□□□ -0.3
SMARCB1-201ENST00000263121 SPAG11AQ6PDA7 123 aa13.16□□□□□ -0.3
SMARCB1-201ENST00000263121 LIMD2Q9BT23 127 aa13.15□□□□□ -0.3
SMARCB1-201ENST00000263121 K7EQZ3 153 aa13.15□□□□□ -0.31
SMARCB1-201ENST00000263121 RPS29P62273 56 aaKnown RBP13.13□□□□□ -0.31
SMARCB1-201ENST00000263121 FAM236AA0A1B0GUQ0 79 aa13.12□□□□□ -0.31
SMARCB1-201ENST00000263121 FAM236BA0A1B0GV22 79 aa13.12□□□□□ -0.31
SMARCB1-201ENST00000263121 A8MWP4 228 aa13.12□□□□□ -0.31
SMARCB1-201ENST00000263121 KRTAP10-8P60410 259 aa13.11□□□□□ -0.31
SMARCB1-201ENST00000263121 BIRC6Q9NR09 4857 aa13.1□□□□□ -0.31
SMARCB1-201ENST00000263121 LRP1Q07954 4544 aaKnown RBP13.08□□□□□ -0.32
SMARCB1-201ENST00000263121 FAT3Q8TDW7 4589 aa13.08□□□□□ -0.32
SMARCB1-201ENST00000263121 C1orf195Q5TG92 126 aa13.07□□□□□ -0.32
SMARCB1-201ENST00000263121 PRR15Q8IV56 129 aa13.07□□□□□ -0.32
SMARCB1-201ENST00000263121 TNXBP22105 4242 aa13.05□□□□□ -0.32
SMARCB1-201ENST00000263121 KRTAP4-5Q9BYR2 181 aa13.05□□□□□ -0.32
SMARCB1-201ENST00000263121 NDUFB1O75438 58 aa13.03□□□□□ -0.32
SMARCB1-201ENST00000263121 A0A1B0GVX0 72 aa12.99□□□□□ -0.33
SMARCB1-201ENST00000263121 HCG22E2RYF7 251 aa12.97□□□□□ -0.33
SMARCB1-201ENST00000263121 MT1HL1P0DM35 61 aa12.96□□□□□ -0.34
SMARCB1-201ENST00000263121 FLG2Q5D862 2391 aaPredicted RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms