RNA–Protein interactions for RNA: ENST00000260563.4

RTCA-201, Transcript of RNA 3'-terminal phosphate cyclase, humanhuman

TSL 1 (best) BASIC

Gene RTCA, Length 1,534 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTCA-201ENST00000260563 TMEM256-PLSCR3K7ERE1 68 aa12.4□□□□□ -0.42
RTCA-201ENST00000260563 OXTP01178 125 aa12.4□□□□□ -0.42
RTCA-201ENST00000260563 SPRR4Q96PI1 79 aa12.4□□□□□ -0.42
RTCA-201ENST00000260563 TEX49A0A1B0GTD5 131 aa12.39□□□□□ -0.43
RTCA-201ENST00000260563 KRTAP1-4P0C5Y4 121 aa12.39□□□□□ -0.43
RTCA-201ENST00000260563 Q8N377 158 aa12.39□□□□□ -0.43
RTCA-201ENST00000260563 F8W1H4 67 aa12.38□□□□□ -0.43
RTCA-201ENST00000260563 GAGE2AQ6NT46 116 aa12.38□□□□□ -0.43
RTCA-201ENST00000260563 PPDPFLQ8WWR9 84 aa12.38□□□□□ -0.43
RTCA-201ENST00000260563 KRTAP29-1A8MX34 341 aaPredicted RBP12.37□□□□□ -0.43
RTCA-201ENST00000260563 SMCPP49901 116 aaPredicted RBP12.37□□□□□ -0.43
RTCA-201ENST00000260563 ANKRD29Q8N6D5 301 aa12.37□□□□□ -0.43
RTCA-201ENST00000260563 LINC01600Q96MT4 127 aa12.37□□□□□ -0.43
RTCA-201ENST00000260563 SPRR1BP22528 89 aa12.36□□□□□ -0.43
RTCA-201ENST00000260563 LINC00483Q53H64 154 aa12.34□□□□□ -0.43
RTCA-201ENST00000260563 J3QL48 77 aa12.31□□□□□ -0.44
RTCA-201ENST00000260563 SMIM29Q86T20 159 aa12.31□□□□□ -0.44
RTCA-201ENST00000260563 C3orf22Q8N5N4 141 aa12.31□□□□□ -0.44
RTCA-201ENST00000260563 ANAPC11Q9NYG5 84 aa12.31□□□□□ -0.44
RTCA-201ENST00000260563 LAMTOR3Q9UHA4 124 aa12.3□□□□□ -0.44
RTCA-201ENST00000260563 TNXBP22105 4242 aa12.29□□□□□ -0.44
RTCA-201ENST00000260563 NDUFV3P56181 108 aaKnown RBP12.29□□□□□ -0.44
RTCA-201ENST00000260563 FAM229BQ4G0N7 80 aa12.29□□□□□ -0.44
RTCA-201ENST00000260563 PRR26Q8N8Z3 221 aa12.29□□□□□ -0.44
RTCA-201ENST00000260563 A0A087X002 238 aa12.27□□□□□ -0.44
RTCA-201ENST00000260563 CRYGAP11844 174 aa12.27□□□□□ -0.44
RTCA-201ENST00000260563 MT1HL1P0DM35 61 aa12.25□□□□□ -0.45
RTCA-201ENST00000260563 A0A1B0GV72 72 aa12.24□□□□□ -0.45
RTCA-201ENST00000260563 F8WEM9 126 aa12.24□□□□□ -0.45
RTCA-201ENST00000260563 JMJD7-PLA2G4BH0Y9G9 81 aa12.22□□□□□ -0.45
RTCA-201ENST00000260563 KRTAP10-8P60410 259 aa12.22□□□□□ -0.45
RTCA-201ENST00000260563 ETDBQ3ZM63 59 aa12.22□□□□□ -0.45
RTCA-201ENST00000260563 TEN1Q86WV5 123 aa12.22□□□□□ -0.45
RTCA-201ENST00000260563 OBSCN-AS1Q96MR7 158 aa12.21□□□□□ -0.46
RTCA-201ENST00000260563 IGLV9-49A0A0B4J1Y8 123 aa12.2□□□□□ -0.46
RTCA-201ENST00000260563 RBM3P98179 157 aaKnown RBP12.2□□□□□ -0.46
RTCA-201ENST00000260563 KRTAP13-2Q52LG2 175 aa12.2□□□□□ -0.46
RTCA-201ENST00000260563 DMBT1Q9UGM3 2413 aaPredicted RBP12.19□□□□□ -0.46
RTCA-201ENST00000260563 TYMSOSQ8TAI1 123 aa12.19□□□□□ -0.46
RTCA-201ENST00000260563 C9orf153Q5TBE3 101 aa12.17□□□□□ -0.46
RTCA-201ENST00000260563 IGLV8-61A0A075B6I0 122 aa12.16□□□□□ -0.46
RTCA-201ENST00000260563 MOBPQ13875 183 aa12.15□□□□□ -0.46
RTCA-201ENST00000260563 Q8NBF4 154 aa12.15□□□□□ -0.46
RTCA-201ENST00000260563 DSCR8Q96T75 97 aa12.15□□□□□ -0.46
RTCA-201ENST00000260563 C14orf132Q9NPU4 83 aa12.15□□□□□ -0.46
RTCA-201ENST00000260563 TRBV7-4A0A0J9YYF1 115 aa12.12□□□□□ -0.47
RTCA-201ENST00000260563 Q6JHZ5 121 aa12.11□□□□□ -0.47
RTCA-201ENST00000260563 IGFL1Q6UW32 110 aa12.11□□□□□ -0.47
RTCA-201ENST00000260563 LOC110117498A0A087WWA1 95 aa12.1□□□□□ -0.47
RTCA-201ENST00000260563 SSBP3-AS1Q7Z2R9 100 aa12.09□□□□□ -0.47
RTCA-201ENST00000260563 A0A0G2JQZ4 141 aa12.07□□□□□ -0.48
RTCA-201ENST00000260563 PDE6GP18545 87 aa12.07□□□□□ -0.48
RTCA-201ENST00000260563 Q6ZQT0 140 aa12.07□□□□□ -0.48
RTCA-201ENST00000260563 LINC00304Q8N9R0 145 aa12.06□□□□□ -0.48
RTCA-201ENST00000260563 CCKP06307 115 aa12.03□□□□□ -0.48
RTCA-201ENST00000260563 VPS25Q9BRG1 176 aa12.02□□□□□ -0.48
RTCA-201ENST00000260563 A0A1W2PNM2 257 aa12.01□□□□□ -0.49
RTCA-201ENST00000260563 C21orf62-AS1Q17RA5 79 aa12.01□□□□□ -0.49
RTCA-201ENST00000260563 HERC1Q15751 4861 aa12.01□□□□□ -0.49
RTCA-201ENST00000260563 C4orf48Q5BLP8 95 aa11.99□□□□□ -0.49
RTCA-201ENST00000260563 SPAG11AQ6PDA7 123 aa11.98□□□□□ -0.49
RTCA-201ENST00000260563 Q6Q795 121 aa11.97□□□□□ -0.49
RTCA-201ENST00000260563 HRCT1Q6UXD1 115 aa11.96□□□□□ -0.49
RTCA-201ENST00000260563 CD164Q04900 197 aa11.95□□□□□ -0.5
RTCA-201ENST00000260563 J3QR89 54 aa11.93□□□□□ -0.5
RTCA-201ENST00000260563 TRBV7-7A0A0K0K1E9 115 aa11.92□□□□□ -0.5
RTCA-201ENST00000260563 SPINK1P00995 79 aa11.92□□□□□ -0.5
RTCA-201ENST00000260563 A0A1B0GW54 56 aa11.91□□□□□ -0.5
RTCA-201ENST00000260563 A0A087WSZ3 146 aa11.89□□□□□ -0.51
RTCA-201ENST00000260563 FAM240AA0A1B0GVK7 77 aa11.87□□□□□ -0.51
RTCA-201ENST00000260563 ACYP1P07311 99 aa11.87□□□□□ -0.51
RTCA-201ENST00000260563 RPS29P62273 56 aaKnown RBP11.87□□□□□ -0.51
RTCA-201ENST00000260563 K7ERU9 68 aa11.86□□□□□ -0.51
RTCA-201ENST00000260563 LINC00846Q9NV44 126 aa11.83□□□□□ -0.52
RTCA-201ENST00000260563 LIMD2Q9BT23 127 aa11.82□□□□□ -0.52
RTCA-201ENST00000260563 SS18L2Q9UHA2 77 aa11.81□□□□□ -0.52
RTCA-201ENST00000260563 Q5XG85 94 aa11.79□□□□□ -0.52
RTCA-201ENST00000260563 RETNLBQ9BQ08 111 aa11.79□□□□□ -0.52
RTCA-201ENST00000260563 UBL5Q9BZL1 73 aa11.77□□□□□ -0.52
RTCA-201ENST00000260563 NREPQ16612 68 aa11.76□□□□□ -0.53
RTCA-201ENST00000260563 Q6ZVQ6 151 aa11.76□□□□□ -0.53
RTCA-201ENST00000260563 HMCN2Q8NDA2 5059 aa11.75□□□□□ -0.53
RTCA-201ENST00000260563 PRR4Q16378 134 aa11.74□□□□□ -0.53
RTCA-201ENST00000260563 ASB16-AS1Q495Z4 193 aa11.74□□□□□ -0.53
RTCA-201ENST00000260563 LINC00472Q9H8W2 130 aa11.7□□□□□ -0.54
RTCA-201ENST00000260563 Q96NJ1 140 aa11.7□□□□□ -0.54
RTCA-201ENST00000260563 CDIP1Q9H305 208 aa11.68□□□□□ -0.54
RTCA-201ENST00000260563 FP248Q71RG6 208 aaPredicted RBP11.67□□□□□ -0.54
RTCA-201ENST00000260563 DEFB116Q30KQ4 102 aa11.66□□□□□ -0.54
RTCA-201ENST00000260563 C1orf195Q5TG92 126 aa11.66□□□□□ -0.54
RTCA-201ENST00000260563 LINC00643Q86TS7 51 aa11.64□□□□□ -0.55
RTCA-201ENST00000260563 BPY2O14599 106 aa11.63□□□□□ -0.55
RTCA-201ENST00000260563 SIGMAR1Q99720 223 aa11.63□□□□□ -0.55
RTCA-201ENST00000260563 IGLV7-46A0A075B6I9 117 aa11.62□□□□□ -0.55
RTCA-201ENST00000260563 IGKV4-1P06312 121 aa11.61□□□□□ -0.55
RTCA-201ENST00000260563 J3KT08 172 aa11.6□□□□□ -0.55
RTCA-201ENST00000260563 LPAP08519 4548 aa11.59□□□□□ -0.55
RTCA-201ENST00000260563 CXCL6P80162 114 aa11.58□□□□□ -0.56
RTCA-201ENST00000260563 ATP5EP2Q5VTU8 51 aa11.58□□□□□ -0.56
RTCA-201ENST00000260563 IGKV3D-7A0A0C4DH55 119 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms