RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 LOC110117498A0A087WWA1 95 aa13.92□□□□□ -0.18
CLN6-224ENST00000638076 GHRHP01286 108 aa13.91□□□□□ -0.18
CLN6-224ENST00000638076 APLNQ9ULZ1 77 aa13.91□□□□□ -0.18
CLN6-224ENST00000638076 DSCR8Q96T75 97 aa13.91□□□□□ -0.18
CLN6-224ENST00000638076 UBE2DNLQ8IWF7 75 aa13.9□□□□□ -0.18
CLN6-224ENST00000638076 RPL37AP8A6NKH3 93 aa13.88□□□□□ -0.19
CLN6-224ENST00000638076 IGLV5-37A0A075B6J1 123 aa13.87□□□□□ -0.19
CLN6-224ENST00000638076 LOC107984640A0A0U1RRK4 108 aa13.87□□□□□ -0.19
CLN6-224ENST00000638076 KRTAP7-1Q8IUC3 87 aa13.87□□□□□ -0.19
CLN6-224ENST00000638076 DNAH10Q8IVF4 4471 aa13.87□□□□□ -0.19
CLN6-224ENST00000638076 M0R2N4 97 aa13.86□□□□□ -0.19
CLN6-224ENST00000638076 IGLV1-50A0A075B6I6 118 aa13.85□□□□□ -0.19
CLN6-224ENST00000638076 PSCAO43653 123 aa13.84□□□□□ -0.19
CLN6-224ENST00000638076 PDE6GP18545 87 aa13.84□□□□□ -0.19
CLN6-224ENST00000638076 FAM19A5Q7Z5A7 132 aaPredicted RBP13.84□□□□□ -0.19
CLN6-224ENST00000638076 UBL5Q9BZL1 73 aa13.84□□□□□ -0.19
CLN6-224ENST00000638076 SMIM20Q8N5G0 67 aa13.83□□□□□ -0.2
CLN6-224ENST00000638076 DYNC2H1Q8NCM8 4307 aaKnown RBP13.83□□□□□ -0.2
CLN6-224ENST00000638076 TRBV7-4A0A0J9YYF1 115 aa13.81□□□□□ -0.2
CLN6-224ENST00000638076 PRYO14603 147 aa13.81□□□□□ -0.2
CLN6-224ENST00000638076 MRPL55Q7Z7F7 128 aaKnown RBP13.8□□□□□ -0.2
CLN6-224ENST00000638076 KRTAP4-16G5E9R7 235 aaPredicted RBP13.79□□□□□ -0.2
CLN6-224ENST00000638076 A0A087WVE0 104 aa13.79□□□□□ -0.2
CLN6-224ENST00000638076 Q6ZRX8 168 aa13.79□□□□□ -0.2
CLN6-224ENST00000638076 CSMD3Q7Z407 3707 aa13.78□□□□□ -0.2
CLN6-224ENST00000638076 SPRR1AP35321 89 aa13.78□□□□□ -0.2
CLN6-224ENST00000638076 HIST1H4AP62805 103 aaKnown RBP13.78□□□□□ -0.2
CLN6-224ENST00000638076 ATP5EP2Q5VTU8 51 aa13.78□□□□□ -0.2
CLN6-224ENST00000638076 ETDCA0A1B0GVM5 59 aa13.77□□□□□ -0.21
CLN6-224ENST00000638076 CNBPP62633 177 aaKnown RBP13.77□□□□□ -0.21
CLN6-224ENST00000638076 DEFB105AQ8NG35 78 aa13.76□□□□□ -0.21
CLN6-224ENST00000638076 DHRS4-AS1Q9P1J3 65 aa13.76□□□□□ -0.21
CLN6-224ENST00000638076 Q9BRP9 147 aa13.76□□□□□ -0.21
CLN6-224ENST00000638076 DNAH7Q8WXX0 4024 aa13.76□□□□□ -0.21
CLN6-224ENST00000638076 PLECQ15149 4684 aaKnown RBP13.75□□□□□ -0.21
CLN6-224ENST00000638076 A0A096LNI7 61 aa13.74□□□□□ -0.21
CLN6-224ENST00000638076 Q8N377 158 aa13.73□□□□□ -0.21
CLN6-224ENST00000638076 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.73□□□□□ -0.21
CLN6-224ENST00000638076 IGKV2-24A0A0C4DH68 120 aa13.73□□□□□ -0.21
CLN6-224ENST00000638076 NUPR2A6NF83 97 aa13.73□□□□□ -0.21
CLN6-224ENST00000638076 C16orf90A8MZG2 172 aa13.73□□□□□ -0.21
CLN6-224ENST00000638076 Q6ZVQ6 151 aa13.72□□□□□ -0.21
CLN6-224ENST00000638076 LINC01547P58512 204 aaPredicted RBP13.71□□□□□ -0.21
CLN6-224ENST00000638076 ATOX1O00244 68 aa13.7□□□□□ -0.22
CLN6-224ENST00000638076 C14orf177Q52M58 125 aa13.69□□□□□ -0.22
CLN6-224ENST00000638076 FAM19A1Q7Z5A9 133 aa13.69□□□□□ -0.22
CLN6-224ENST00000638076 TENM2Q9NT68 2774 aa13.68□□□□□ -0.22
CLN6-224ENST00000638076 REG3GQ6UW15 175 aa13.68□□□□□ -0.22
CLN6-224ENST00000638076 HAMPP81172 84 aa13.68□□□□□ -0.22
CLN6-224ENST00000638076 NBDYA0A0U1RRE5 68 aa13.67□□□□□ -0.22
CLN6-224ENST00000638076 A0A1W2PNN7 141 aa13.67□□□□□ -0.22
CLN6-224ENST00000638076 ST20-AS1Q8NBB2 130 aa13.67□□□□□ -0.22
CLN6-224ENST00000638076 UBE2BP63146 152 aa13.65□□□□□ -0.22
CLN6-224ENST00000638076 C3orf22Q8N5N4 141 aa13.65□□□□□ -0.22
CLN6-224ENST00000638076 ERC2-IT1O76042 136 aa13.64□□□□□ -0.23
CLN6-224ENST00000638076 IGLV5-48A0A075B6I7 105 aa13.63□□□□□ -0.23
CLN6-224ENST00000638076 LRCOL1A6NCL2 159 aa13.63□□□□□ -0.23
CLN6-224ENST00000638076 UQCRQO14949 82 aa13.63□□□□□ -0.23
CLN6-224ENST00000638076 C9orf153Q5TBE3 101 aa13.62□□□□□ -0.23
CLN6-224ENST00000638076 COX7CP15954 63 aa13.61□□□□□ -0.23
CLN6-224ENST00000638076 STARD9Q9P2P6 4700 aa13.61□□□□□ -0.23
CLN6-224ENST00000638076 PRKDCP78527 4128 aaKnown RBP13.61□□□□□ -0.23
CLN6-224ENST00000638076 CHTF8P0CG12 524 aa13.61□□□□□ -0.23
CLN6-224ENST00000638076 CXCL6P80162 114 aa13.59□□□□□ -0.23
CLN6-224ENST00000638076 Q6ZRN7 208 aaPredicted RBP13.58□□□□□ -0.23
CLN6-224ENST00000638076 C9orf163Q8N9P6 203 aa13.58□□□□□ -0.24
CLN6-224ENST00000638076 TNP2Q05952 138 aa13.56□□□□□ -0.24
CLN6-224ENST00000638076 SCXQ7RTU7 201 aa13.56□□□□□ -0.24
CLN6-224ENST00000638076 C3orf84H3BNL1 204 aa13.55□□□□□ -0.24
CLN6-224ENST00000638076 PRLHP81277 87 aa13.55□□□□□ -0.24
CLN6-224ENST00000638076 SERP2Q8N6R1 65 aa13.55□□□□□ -0.24
CLN6-224ENST00000638076 PHF5AQ7RTV0 110 aaKnown RBP13.54□□□□□ -0.24
CLN6-224ENST00000638076 C1orf137Q5JT78 98 aa13.52□□□□□ -0.24
CLN6-224ENST00000638076 VPS13DQ5THJ4 4388 aa13.52□□□□□ -0.24
CLN6-224ENST00000638076 DNHD1Q96M86 4753 aa13.52□□□□□ -0.25
CLN6-224ENST00000638076 NREPQ16612 68 aa13.51□□□□□ -0.25
CLN6-224ENST00000638076 KRTAP11-1Q8IUC1 163 aa13.5□□□□□ -0.25
CLN6-224ENST00000638076 A0A1W2PNM2 257 aa13.5□□□□□ -0.25
CLN6-224ENST00000638076 FUSP35637 526 aaKnown RBP eCLIP13.5□□□□□ -0.251e-9■■■■■ 32
CLN6-224ENST00000638076 SMIM29Q86T20 159 aa13.48□□□□□ -0.25
CLN6-224ENST00000638076 PKIGQ9Y2B9 76 aa13.48□□□□□ -0.25
CLN6-224ENST00000638076 CRYGAP11844 174 aa13.48□□□□□ -0.25
CLN6-224ENST00000638076 HIGD2AQ9BW72 106 aa13.48□□□□□ -0.25
CLN6-224ENST00000638076 MEGF8Q7Z7M0 2845 aa13.48□□□□□ -0.25
CLN6-224ENST00000638076 LINC00474Q9P2X8 69 aa13.46□□□□□ -0.26
CLN6-224ENST00000638076 PANO1I0J062 215 aa13.45□□□□□ -0.26
CLN6-224ENST00000638076 Q8NBF4 154 aa13.45□□□□□ -0.26
CLN6-224ENST00000638076 A0A1B0GW54 56 aa13.44□□□□□ -0.26
CLN6-224ENST00000638076 J3KT08 172 aa13.44□□□□□ -0.26
CLN6-224ENST00000638076 F8WEM9 126 aa13.42□□□□□ -0.26
CLN6-224ENST00000638076 EPM2AB3EWF7 344 aa13.41□□□□□ -0.26
CLN6-224ENST00000638076 DPH3Q96FX2 82 aa13.41□□□□□ -0.26
CLN6-224ENST00000638076 BPY2O14599 106 aa13.41□□□□□ -0.26
CLN6-224ENST00000638076 Q8N9L7 120 aa13.41□□□□□ -0.26
CLN6-224ENST00000638076 LINC00476Q8WZB0 136 aa13.41□□□□□ -0.26
CLN6-224ENST00000638076 SPRR4Q96PI1 79 aa13.41□□□□□ -0.26
CLN6-224ENST00000638076 A0A087WTM6 91 aa13.4□□□□□ -0.26
CLN6-224ENST00000638076 CYSTM1Q9H1C7 97 aa13.39□□□□□ -0.27
CLN6-224ENST00000638076 H0Y9J4 135 aa13.39□□□□□ -0.27
CLN6-224ENST00000638076 BCE1O60756 84 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 139.2 ms