RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 IMMP2LQ96T52 175 aa0.35□□□□□ -2.35
SMARCB1-209ENST00000635578 PMCHL2Q9BQD1 86 aa0.35□□□□□ -2.35
SMARCB1-209ENST00000635578 NAA38Q9BRA0 125 aaKnown RBP0.35□□□□□ -2.35
SMARCB1-209ENST00000635578 TIMM21Q9BVV7 248 aa0.35□□□□□ -2.35
SMARCB1-209ENST00000635578 SMIM2Q9BVW6 85 aa0.35□□□□□ -2.35
SMARCB1-209ENST00000635578 TTTY13Q9BZ97 58 aa0.35□□□□□ -2.35
SMARCB1-209ENST00000635578 TMEM126AQ9H061 195 aa0.35□□□□□ -2.35
SMARCB1-209ENST00000635578 RSL24D1Q9UHA3 163 aaKnown RBP0.35□□□□□ -2.35
SMARCB1-209ENST00000635578 AHNAKQ09666 5890 aaKnown RBP0.35□□□□□ -2.35
SMARCB1-209ENST00000635578 A0A087WWC5 75 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 IGKV2D-26A0A0A0MRZ7 120 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 TGIF2-C20orf24A0A0A6YYL0 155 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 TRAV1-1A0A0B4J248 108 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 TRBV10-3A0A0K0K1G6 114 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 FAM236DA0A1B0GTK5 79 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 C8orf87E5RJ46 101 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 TMEM250H0YL14 139 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 COX7A2LO14548 114 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 BCE1O60756 84 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 TRGC1P0CF51 173 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 FAM236CP0DP71 79 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 ADCYAP1P18509 176 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 SPRR2EP22531 72 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 FCER1GP30273 86 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 S100A5P33763 92 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 SPRR2BP35325 72 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 SPRR2AP35326 72 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 GNG4P50150 75 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 TAS2R45P59539 299 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 AP3S2P59780 193 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 RAB4BP61018 213 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 RAB14P61106 215 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 RPL37P61927 97 aaKnown RBP0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 HBBP68871 147 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 MRPS10P82664 201 aaKnown RBP0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 SSBP1Q04837 148 aaKnown RBP0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 Q0VG73 95 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 ELOBQ15370 118 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 VAMP3Q15836 100 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 ADIRFQ15847 76 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 GUK1Q16774 197 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 SOSTDC1Q6X4U4 206 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 C2orf91Q6ZV80 131 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 COA5Q86WW8 74 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 BAGE2Q86Y30 109 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 KCNRGQ8N5I3 272 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 SMCR5Q8TEV8 140 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 TSKUQ8WUA8 353 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 BTF3L4Q96K17 158 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 FAM210AQ96ND0 272 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 SIGMAR1Q99720 223 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 SLC25A21Q9BQT8 299 aaPredicted RBP0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 Q9BRP9 147 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 PSMG3Q9BT73 122 aaPredicted RBP0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 CST9LQ9H4G1 147 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 Q9H521 79 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 C8orf4Q9NR00 106 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 CDC42SE2Q9NRR3 84 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 MRPL35Q9NZE8 188 aaKnown RBP0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 CDKN2A-AS1Q9UH64 79 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 EPDR1Q9UM22 224 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 TNFSF18Q9UNG2 199 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 C22orf24Q9Y442 160 aa0.34□□□□□ -2.36
SMARCB1-209ENST00000635578 IGKV3D-7A0A0C4DH55 119 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 ETDCA0A1B0GVM5 59 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 A0A1W2PRE2 83 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 NAP1L6A6NFF2 107 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 FABP5P3A8MUU1 101 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 HIGD1CA8MV81 97 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 H3BUT2 72 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 I3L3M4 83 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 IFNA1P01562 189 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 MT1BP07438 61 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 PET100P0DJ07 73 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 SMIM13P0DJ93 91 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 ZNF25P17030 456 aaPredicted RBP0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 S100A11P31949 105 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 IFI27P40305 119 aaPredicted RBP0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 RPL28P46779 137 aaKnown RBP0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 NDUFA6P56556 154 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 KRTAP19-6Q3LI70 58 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 MEIG1Q5JSS6 88 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 ATP5L2Q7Z4Y8 100 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 MRPL52Q86TS9 123 aaKnown RBP0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 AKAP14Q86UN6 197 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 FAM19A2Q8N3H0 131 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 COX7B2Q8TF08 81 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 SFT2D1Q8WV19 159 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 PLEKHB2Q96CS7 222 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 SMIM12Q96EX1 92 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 TMEM141Q96I45 108 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 SPRR2FQ96RM1 72 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 C12orf57Q99622 126 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 SMIM7Q9BQ49 75 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 CCDC32Q9BV29 185 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 EIF5A2Q9GZV4 153 aaKnown RBP0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 TMEM191AQ9H0A3 160 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 MED28Q9H204 178 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 ST20Q9HBF5 79 aa0.33□□□□□ -2.36
SMARCB1-209ENST00000635578 NIT2Q9NQR4 276 aa0.33□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 181.1 ms