RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 DNAH1Q9P2D7 4330 aa8.3□□□□□ -1.08
LINC00540-203ENST00000631321 IGLV5-37A0A075B6J1 123 aa8.3□□□□□ -1.08
LINC00540-203ENST00000631321 TRAV10A0A0B4J240 114 aa8.29□□□□□ -1.08
LINC00540-203ENST00000631321 MRAPQ8TCY5 172 aa8.29□□□□□ -1.08
LINC00540-203ENST00000631321 LINC00588Q9Y4M8 146 aa8.29□□□□□ -1.08
LINC00540-203ENST00000631321 LOC107984640A0A0U1RRK4 108 aa8.28□□□□□ -1.08
LINC00540-203ENST00000631321 DPH3Q96FX2 82 aa8.28□□□□□ -1.08
LINC00540-203ENST00000631321 F8P00451 2351 aa8.28□□□□□ -1.08
LINC00540-203ENST00000631321 KRTAP4-16G5E9R7 235 aaPredicted RBP8.27□□□□□ -1.09
LINC00540-203ENST00000631321 Q8N377 158 aa8.27□□□□□ -1.09
LINC00540-203ENST00000631321 PRYO14603 147 aa8.27□□□□□ -1.09
LINC00540-203ENST00000631321 DHRS4-AS1Q9P1J3 65 aa8.27□□□□□ -1.09
LINC00540-203ENST00000631321 IGLV5-48A0A075B6I7 105 aa8.26□□□□□ -1.09
LINC00540-203ENST00000631321 SPRR1AP35321 89 aa8.26□□□□□ -1.09
LINC00540-203ENST00000631321 C20orf197Q8N268 126 aa8.26□□□□□ -1.09
LINC00540-203ENST00000631321 IGLV1-50A0A075B6I6 118 aa8.25□□□□□ -1.09
LINC00540-203ENST00000631321 Q6ZRX8 168 aa8.25□□□□□ -1.09
LINC00540-203ENST00000631321 CASC10Q5T4H9 136 aa8.25□□□□□ -1.09
LINC00540-203ENST00000631321 SCXQ7RTU7 201 aa8.24□□□□□ -1.09
LINC00540-203ENST00000631321 RMI2Q96E14 147 aa8.24□□□□□ -1.09
LINC00540-203ENST00000631321 FBN1P35555 2871 aaKnown RBP8.24□□□□□ -1.09
LINC00540-203ENST00000631321 KRTAP7-1Q8IUC3 87 aa8.23□□□□□ -1.09
LINC00540-203ENST00000631321 TM2D3Q9BRN9 247 aa8.23□□□□□ -1.09
LINC00540-203ENST00000631321 STAB1Q9NY15 2570 aa8.23□□□□□ -1.09
LINC00540-203ENST00000631321 KLKP1Q107X0 134 aa8.23□□□□□ -1.09
LINC00540-203ENST00000631321 Q9BRP9 147 aa8.23□□□□□ -1.09
LINC00540-203ENST00000631321 A0A1B0GW54 56 aa8.22□□□□□ -1.09
LINC00540-203ENST00000631321 FAM168BA1KXE4 195 aa8.22□□□□□ -1.09
LINC00540-203ENST00000631321 NREPQ16612 68 aa8.22□□□□□ -1.09
LINC00540-203ENST00000631321 TNP2Q05952 138 aa8.21□□□□□ -1.09
LINC00540-203ENST00000631321 FAM19A5Q7Z5A7 132 aaPredicted RBP8.21□□□□□ -1.09
LINC00540-203ENST00000631321 DEFB105AQ8NG35 78 aa8.21□□□□□ -1.09
LINC00540-203ENST00000631321 HUWE1Q7Z6Z7 4374 aaKnown RBP8.21□□□□□ -1.1
LINC00540-203ENST00000631321 RPL37AP8A6NKH3 93 aa8.21□□□□□ -1.1
LINC00540-203ENST00000631321 MAST4O15021 2626 aa8.21□□□□□ -1.1
LINC00540-203ENST00000631321 ETDCA0A1B0GVM5 59 aa8.2□□□□□ -1.1
LINC00540-203ENST00000631321 H7BZZ5 65 aa8.2□□□□□ -1.1
LINC00540-203ENST00000631321 IGKV4-1P06312 121 aa8.2□□□□□ -1.1
LINC00540-203ENST00000631321 FLNBO75369 2602 aaKnown RBP8.19□□□□□ -1.1
LINC00540-203ENST00000631321 OXTP01178 125 aa8.19□□□□□ -1.1
LINC00540-203ENST00000631321 MRPL55Q7Z7F7 128 aaKnown RBP8.19□□□□□ -1.1
LINC00540-203ENST00000631321 FAM236DA0A1B0GTK5 79 aa8.17□□□□□ -1.1
LINC00540-203ENST00000631321 A0A1W2PNM2 257 aa8.17□□□□□ -1.1
LINC00540-203ENST00000631321 C3orf84H3BNL1 204 aa8.17□□□□□ -1.1
LINC00540-203ENST00000631321 BPY2O14599 106 aa8.17□□□□□ -1.1
LINC00540-203ENST00000631321 FAM236CP0DP71 79 aa8.17□□□□□ -1.1
LINC00540-203ENST00000631321 ERC2-IT1O76042 136 aa8.17□□□□□ -1.1
LINC00540-203ENST00000631321 FUSP35637 526 aaKnown RBP eCLIP8.17□□□□□ -1.1
LINC00540-203ENST00000631321 NOTCH1P46531 2555 aa8.16□□□□□ -1.1
LINC00540-203ENST00000631321 K7EIL1 84 aa8.16□□□□□ -1.1
LINC00540-203ENST00000631321 Q8N9L7 120 aa8.16□□□□□ -1.1
LINC00540-203ENST00000631321 ST20-AS1Q8NBB2 130 aa8.16□□□□□ -1.1
LINC00540-203ENST00000631321 PRB2P02812 416 aaPredicted RBP8.15□□□□□ -1.1
LINC00540-203ENST00000631321 C1orf137Q5JT78 98 aa8.15□□□□□ -1.1
LINC00540-203ENST00000631321 Q8NBF4 154 aa8.14□□□□□ -1.11
LINC00540-203ENST00000631321 EPM2AB3EWF7 344 aa8.14□□□□□ -1.11
LINC00540-203ENST00000631321 NDUFC1O43677 76 aa8.14□□□□□ -1.11
LINC00540-203ENST00000631321 SPRR4Q96PI1 79 aa8.14□□□□□ -1.11
LINC00540-203ENST00000631321 SNURFQ9Y675 71 aa8.14□□□□□ -1.11
LINC00540-203ENST00000631321 REG3GQ6UW15 175 aa8.13□□□□□ -1.11
LINC00540-203ENST00000631321 OCR1Q9BZK8 76 aa8.13□□□□□ -1.11
LINC00540-203ENST00000631321 SERP1Q9Y6X1 66 aa8.11□□□□□ -1.11
LINC00540-203ENST00000631321 BAHCC1Q9P281 2608 aa8.11□□□□□ -1.11
LINC00540-203ENST00000631321 UBE2BP63146 152 aa8.11□□□□□ -1.11
LINC00540-203ENST00000631321 SMIM29Q86T20 159 aa8.11□□□□□ -1.11
LINC00540-203ENST00000631321 F8WEM9 126 aa8.1□□□□□ -1.11
LINC00540-203ENST00000631321 CNBPP62633 177 aaKnown RBP8.1□□□□□ -1.11
LINC00540-203ENST00000631321 TMEM254Q8TBM7 123 aa8.1□□□□□ -1.11
LINC00540-203ENST00000631321 NBEAL1Q6ZS30 2694 aa8.1□□□□□ -1.11
LINC00540-203ENST00000631321 C16orf90A8MZG2 172 aa8.09□□□□□ -1.11
LINC00540-203ENST00000631321 KRTAP1-5Q9BYS1 174 aa8.09□□□□□ -1.11
LINC00540-203ENST00000631321 A0A096LNI7 61 aa8.07□□□□□ -1.12
LINC00540-203ENST00000631321 Q5XG85 94 aa8.07□□□□□ -1.12
LINC00540-203ENST00000631321 A0A0U1RQV1 116 aa8.07□□□□□ -1.12
LINC00540-203ENST00000631321 ATP5EP56381 51 aaPredicted RBP8.07□□□□□ -1.12
LINC00540-203ENST00000631321 A0A1W2PNN7 141 aa8.05□□□□□ -1.12
LINC00540-203ENST00000631321 LINC00476Q8WZB0 136 aa8.05□□□□□ -1.12
LINC00540-203ENST00000631321 DNAH10Q8IVF4 4471 aa8.05□□□□□ -1.12
LINC00540-203ENST00000631321 IGLV8-61A0A075B6I0 122 aa8.05□□□□□ -1.12
LINC00540-203ENST00000631321 DSCR10P59022 87 aa8.05□□□□□ -1.12
LINC00540-203ENST00000631321 COL6A5A8TX70 2615 aa8.05□□□□□ -1.12
LINC00540-203ENST00000631321 DYNC2H1Q8NCM8 4307 aaKnown RBP8.05□□□□□ -1.12
LINC00540-203ENST00000631321 LCE6AA0A183 80 aa8.03□□□□□ -1.12
LINC00540-203ENST00000631321 C5orf47Q569G3 176 aa8.03□□□□□ -1.12
LINC00540-203ENST00000631321 IGFL1Q6UW32 110 aa8.02□□□□□ -1.13
LINC00540-203ENST00000631321 IGKV2-24A0A0C4DH68 120 aa8.02□□□□□ -1.13
LINC00540-203ENST00000631321 C14orf177Q52M58 125 aa8.02□□□□□ -1.13
LINC00540-203ENST00000631321 APLNQ9ULZ1 77 aa8.02□□□□□ -1.13
LINC00540-203ENST00000631321 PSCAO43653 123 aa8.01□□□□□ -1.13
LINC00540-203ENST00000631321 PRLHP81277 87 aa8.01□□□□□ -1.13
LINC00540-203ENST00000631321 C4orf26Q17RF5 130 aa8.01□□□□□ -1.13
LINC00540-203ENST00000631321 DNAH9Q9NYC9 4486 aa8.01□□□□□ -1.13
LINC00540-203ENST00000631321 K7EQZ3 153 aa7.99□□□□□ -1.13
LINC00540-203ENST00000631321 H0Y9J4 135 aa7.99□□□□□ -1.13
LINC00540-203ENST00000631321 LYSTQ99698 3801 aa7.98□□□□□ -1.13
LINC00540-203ENST00000631321 UBE2DNLQ8IWF7 75 aa7.98□□□□□ -1.13
LINC00540-203ENST00000631321 FAM30AQ9NZY2 134 aa7.98□□□□□ -1.13
LINC00540-203ENST00000631321 STAB2Q8WWQ8 2551 aa7.98□□□□□ -1.13
LINC00540-203ENST00000631321 SPRR1BP22528 89 aa7.98□□□□□ -1.13
LINC00540-203ENST00000631321 HIGD2AQ9BW72 106 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms