RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ARPC4P59998 168 aa-1.37□□□□□ -2.63
SCN1A-208ENST00000625916 DR1Q01658 176 aa-1.37□□□□□ -2.63
SCN1A-208ENST00000625916 SMIM21Q3B7S5 101 aa-1.37□□□□□ -2.63
SCN1A-208ENST00000625916 C9orf153Q5TBE3 101 aa-1.37□□□□□ -2.63
SCN1A-208ENST00000625916 SFTA2Q6UW10 78 aa-1.37□□□□□ -2.63
SCN1A-208ENST00000625916 CDKN2A-AS1Q9UH64 79 aa-1.37□□□□□ -2.63
SCN1A-208ENST00000625916 GRIN2AQ12879 1464 aa-1.37□□□□□ -2.63
SCN1A-208ENST00000625916 ANKRD36A6QL64 1941 aa-1.38□□□□□ -2.63
SCN1A-208ENST00000625916 FAM223BA6NKX1 122 aa-1.38□□□□□ -2.63
SCN1A-208ENST00000625916 CATR1Q13166 79 aa-1.38□□□□□ -2.63
SCN1A-208ENST00000625916 Q56UQ5 140 aa-1.38□□□□□ -2.63
SCN1A-208ENST00000625916 DEFB121Q5J5C9 76 aa-1.38□□□□□ -2.63
SCN1A-208ENST00000625916 MEIG1Q5JSS6 88 aa-1.38□□□□□ -2.63
SCN1A-208ENST00000625916 C5orf38Q86SI9 138 aa-1.38□□□□□ -2.63
SCN1A-208ENST00000625916 C8orf59Q8N0T1 100 aaPredicted RBP-1.38□□□□□ -2.63
SCN1A-208ENST00000625916 ARL11Q969Q4 196 aa-1.38□□□□□ -2.63
SCN1A-208ENST00000625916 PFDN5Q99471 154 aa-1.38□□□□□ -2.63
SCN1A-208ENST00000625916 SNRNP25Q9BV90 132 aaKnown RBP-1.38□□□□□ -2.63
SCN1A-208ENST00000625916 ERVK-7P63135 1459 aa-1.38□□□□□ -2.63
SCN1A-208ENST00000625916 SCN7AQ01118 1682 aa-1.39□□□□□ -2.63
SCN1A-208ENST00000625916 QRICH2Q9H0J4 1663 aa-1.39□□□□□ -2.63
SCN1A-208ENST00000625916 PRDM15P57071 1507 aaPredicted RBP-1.39□□□□□ -2.63
SCN1A-208ENST00000625916 LINC01546A6NGU7 62 aa-1.39□□□□□ -2.63
SCN1A-208ENST00000625916 A8MTW9 85 aa-1.39□□□□□ -2.63
SCN1A-208ENST00000625916 CCL22O00626 93 aa-1.39□□□□□ -2.63
SCN1A-208ENST00000625916 HIGD1BQ9P298 99 aa-1.39□□□□□ -2.63
SCN1A-208ENST00000625916 EHBP1L1Q8N3D4 1523 aa-1.4□□□□□ -2.63
SCN1A-208ENST00000625916 NUP188Q5SRE5 1749 aa-1.4□□□□□ -2.63
SCN1A-208ENST00000625916 TRAPPC2P0DI81 140 aa-1.4□□□□□ -2.63
SCN1A-208ENST00000625916 TRAPPC2BP0DI82 140 aa-1.4□□□□□ -2.63
SCN1A-208ENST00000625916 SNCAP37840 140 aa-1.4□□□□□ -2.63
SCN1A-208ENST00000625916 C6orf201Q7Z4U5 140 aa-1.4□□□□□ -2.63
SCN1A-208ENST00000625916 MANBALQ9NQG1 85 aa-1.4□□□□□ -2.63
SCN1A-208ENST00000625916 ROBO1Q9Y6N7 1651 aa-1.4□□□□□ -2.63
SCN1A-208ENST00000625916 TJP1Q07157 1748 aa-1.4□□□□□ -2.63
SCN1A-208ENST00000625916 CEP170BQ9Y4F5 1589 aaPredicted RBP-1.41□□□□□ -2.63
SCN1A-208ENST00000625916 APOC2P02655 101 aa-1.41□□□□□ -2.64
SCN1A-208ENST00000625916 SAA2P0DJI9 122 aaPredicted RBP-1.41□□□□□ -2.64
SCN1A-208ENST00000625916 GNG11P61952 73 aa-1.41□□□□□ -2.64
SCN1A-208ENST00000625916 CEP152O94986 1710 aa-1.41□□□□□ -2.64
SCN1A-208ENST00000625916 SHROOM2Q13796 1616 aa-1.41□□□□□ -2.64
SCN1A-208ENST00000625916 CROCC2H7BZ55 1655 aa-1.42□□□□□ -2.64
SCN1A-208ENST00000625916 ZC3H13Q5T200 1668 aaKnown RBP-1.42□□□□□ -2.64
SCN1A-208ENST00000625916 FAM25AB3EWG3 89 aa-1.42□□□□□ -2.64
SCN1A-208ENST00000625916 FAM25CB3EWG5 89 aa-1.42□□□□□ -2.64
SCN1A-208ENST00000625916 FAM25GB3EWG6 89 aa-1.42□□□□□ -2.64
SCN1A-208ENST00000625916 F8WEM9 126 aa-1.42□□□□□ -2.64
SCN1A-208ENST00000625916 Q0VG73 95 aa-1.42□□□□□ -2.64
SCN1A-208ENST00000625916 NRXN3Q9Y4C0 1643 aa-1.42□□□□□ -2.64
SCN1A-208ENST00000625916 MAP3K1Q13233 1512 aa-1.42□□□□□ -2.64
SCN1A-208ENST00000625916 BCORQ6W2J9 1755 aa-1.43□□□□□ -2.64
SCN1A-208ENST00000625916 OOSP1A8MZH6 123 aa-1.43□□□□□ -2.64
SCN1A-208ENST00000625916 TNP1P09430 55 aa-1.43□□□□□ -2.64
SCN1A-208ENST00000625916 COX6CP09669 75 aa-1.43□□□□□ -2.64
SCN1A-208ENST00000625916 FOCADQ5VW36 1801 aa-1.43□□□□□ -2.64
SCN1A-208ENST00000625916 F6UZH7 168 aa-1.44□□□□□ -2.64
SCN1A-208ENST00000625916 GNG7O60262 68 aa-1.44□□□□□ -2.64
SCN1A-208ENST00000625916 C12orf57Q99622 126 aa-1.44□□□□□ -2.64
SCN1A-208ENST00000625916 EDC4Q6P2E9 1401 aaKnown RBP-1.44□□□□□ -2.64
SCN1A-208ENST00000625916 LRRC37AA6NMS7 1700 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 KIAA1551Q9HCM1 1747 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 MAST1Q9Y2H9 1570 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 CLIP1P30622 1438 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 A0A0G2JND7 137 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 SPTY2D1-AS1A0A0U1RR47 76 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 UBE2L5PA0A1B0GUS4 154 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 SELENOWP63302 87 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 UBE2L3P68036 154 aaKnown RBP-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 HSD52Q0P140 79 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 DEFB107AQ8IZN7 70 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 LEAP2Q969E1 77 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 LINC00470Q9BZP3 86 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 PRO1854Q9UHT4 67 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 NCOA2Q15596 1464 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 ZNF831Q5JPB2 1677 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 KIAA0586Q9BVV6 1533 aa-1.45□□□□□ -2.64
SCN1A-208ENST00000625916 C7orf77A4D0Y5 90 aa-1.46□□□□□ -2.64
SCN1A-208ENST00000625916 ARMS2P0C7Q2 107 aa-1.46□□□□□ -2.64
SCN1A-208ENST00000625916 GNGT1P63211 74 aa-1.46□□□□□ -2.64
SCN1A-208ENST00000625916 ZNF436-AS1Q8NC38 126 aaPredicted RBP-1.46□□□□□ -2.64
SCN1A-208ENST00000625916 ABCC10Q5T3U5 1492 aa-1.46□□□□□ -2.64
SCN1A-208ENST00000625916 RGPD8O14715 1765 aaPredicted RBP-1.47□□□□□ -2.64
SCN1A-208ENST00000625916 RGPD5Q99666 1765 aa-1.47□□□□□ -2.64
SCN1A-208ENST00000625916 EEA1Q15075 1411 aa-1.47□□□□□ -2.64
SCN1A-208ENST00000625916 H3BQF6 201 aa-1.47□□□□□ -2.64
SCN1A-208ENST00000625916 M0QZ58 72 aa-1.47□□□□□ -2.64
SCN1A-208ENST00000625916 UBE2D4Q9Y2X8 147 aa-1.47□□□□□ -2.64
SCN1A-208ENST00000625916 PIK3C2BO00750 1634 aa-1.48□□□□□ -2.65
SCN1A-208ENST00000625916 RNF17Q9BXT8 1623 aaKnown RBP-1.48□□□□□ -2.65
SCN1A-208ENST00000625916 SCAPERQ9BY12 1400 aa-1.48□□□□□ -2.65
SCN1A-208ENST00000625916 MRC2Q9UBG0 1479 aa-1.48□□□□□ -2.65
SCN1A-208ENST00000625916 RGPD2P0DJD1 1756 aa-1.48□□□□□ -2.65
SCN1A-208ENST00000625916 TRBV7-7A0A0K0K1E9 115 aa-1.48□□□□□ -2.65
SCN1A-208ENST00000625916 H0Y9P7 68 aa-1.48□□□□□ -2.65
SCN1A-208ENST00000625916 PAIP2BQ9ULR5 123 aaKnown RBP-1.48□□□□□ -2.65
SCN1A-208ENST00000625916 DIP2CQ9Y2E4 1556 aa-1.48□□□□□ -2.65
SCN1A-208ENST00000625916 TOP2BQ02880 1626 aa-1.48□□□□□ -2.65
SCN1A-208ENST00000625916 PREX2Q70Z35 1606 aa-1.48□□□□□ -2.65
SCN1A-208ENST00000625916 A2ML1A8K2U0 1454 aa-1.49□□□□□ -2.65
SCN1A-208ENST00000625916 FAM24AA6NFZ4 105 aa-1.49□□□□□ -2.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms