RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 NOTCH2Q04721 2471 aa12.79□□□□□ -0.36
PDLIM3-212ENST00000620787 Q8N377 158 aa12.79□□□□□ -0.36
PDLIM3-212ENST00000620787 FASNP49327 2511 aaKnown RBP12.79□□□□□ -0.36
PDLIM3-212ENST00000620787 DEFB105AQ8NG35 78 aa12.77□□□□□ -0.36
PDLIM3-212ENST00000620787 C1orf43Q9BWL3 253 aa12.77□□□□□ -0.36
PDLIM3-212ENST00000620787 A0A0U1RQV1 116 aa12.77□□□□□ -0.37
PDLIM3-212ENST00000620787 IGLV5-48A0A075B6I7 105 aa12.76□□□□□ -0.37
PDLIM3-212ENST00000620787 ESRGQ1W209 222 aa12.76□□□□□ -0.37
PDLIM3-212ENST00000620787 SERTAD4-AS1Q5TG53 156 aa12.76□□□□□ -0.37
PDLIM3-212ENST00000620787 C7orf33Q8WU49 177 aa12.76□□□□□ -0.37
PDLIM3-212ENST00000620787 SYCNQ0VAF6 134 aa12.76□□□□□ -0.37
PDLIM3-212ENST00000620787 LINC00336Q6ZUF6 198 aa12.75□□□□□ -0.37
PDLIM3-212ENST00000620787 NKAPP1Q8N9T2 125 aa12.75□□□□□ -0.37
PDLIM3-212ENST00000620787 RETNQ9HD89 108 aa12.75□□□□□ -0.37
PDLIM3-212ENST00000620787 F8WDY8 70 aa12.74□□□□□ -0.37
PDLIM3-212ENST00000620787 Q6ZTC4 211 aa12.74□□□□□ -0.37
PDLIM3-212ENST00000620787 LINC00474Q9P2X8 69 aa12.74□□□□□ -0.37
PDLIM3-212ENST00000620787 TRRAPQ9Y4A5 3859 aa12.74□□□□□ -0.37
PDLIM3-212ENST00000620787 PRYO14603 147 aa12.74□□□□□ -0.37
PDLIM3-212ENST00000620787 IGKV2D-24A0A075B6R9 120 aa12.73□□□□□ -0.37
PDLIM3-212ENST00000620787 HECTD1Q9ULT8 2610 aa12.72□□□□□ -0.37
PDLIM3-212ENST00000620787 PKD1L1Q8TDX9 2849 aa12.72□□□□□ -0.37
PDLIM3-212ENST00000620787 MRAPQ8TCY5 172 aa12.72□□□□□ -0.37
PDLIM3-212ENST00000620787 INAFM1C9JVW0 142 aa12.71□□□□□ -0.37
PDLIM3-212ENST00000620787 LINC01556Q5JQF7 62 aa12.7□□□□□ -0.38
PDLIM3-212ENST00000620787 A0A1W2PNM2 257 aa12.69□□□□□ -0.38
PDLIM3-212ENST00000620787 ATRQ13535 2644 aa12.69□□□□□ -0.38
PDLIM3-212ENST00000620787 Q6ZRX8 168 aa12.68□□□□□ -0.38
PDLIM3-212ENST00000620787 Q9BRP9 147 aa12.68□□□□□ -0.38
PDLIM3-212ENST00000620787 PRO0628Q9UI54 55 aa12.68□□□□□ -0.38
PDLIM3-212ENST00000620787 TEP1Q99973 2627 aaKnown RBP12.68□□□□□ -0.38
PDLIM3-212ENST00000620787 KRTAP4-16G5E9R7 235 aaPredicted RBP12.67□□□□□ -0.38
PDLIM3-212ENST00000620787 HIGD2AQ9BW72 106 aa12.67□□□□□ -0.38
PDLIM3-212ENST00000620787 DHRS4-AS1Q9P1J3 65 aa12.67□□□□□ -0.38
PDLIM3-212ENST00000620787 NSD1Q96L73 2696 aaPredicted RBP12.67□□□□□ -0.38
PDLIM3-212ENST00000620787 FUSP35637 526 aaKnown RBP eCLIP12.67□□□□□ -0.38
PDLIM3-212ENST00000620787 FAM229BQ4G0N7 80 aa12.67□□□□□ -0.38
PDLIM3-212ENST00000620787 TNP2Q05952 138 aa12.66□□□□□ -0.38
PDLIM3-212ENST00000620787 A0A1B0GW54 56 aa12.66□□□□□ -0.38
PDLIM3-212ENST00000620787 SMIM29Q86T20 159 aa12.66□□□□□ -0.38
PDLIM3-212ENST00000620787 PLA2G2DQ9UNK4 145 aa12.65□□□□□ -0.38
PDLIM3-212ENST00000620787 RPL37AP8A6NKH3 93 aa12.65□□□□□ -0.38
PDLIM3-212ENST00000620787 TLX1NBP0CAT3 122 aa12.65□□□□□ -0.38
PDLIM3-212ENST00000620787 OTOGQ6ZRI0 2925 aa12.64□□□□□ -0.39
PDLIM3-212ENST00000620787 C1orf137Q5JT78 98 aa12.63□□□□□ -0.39
PDLIM3-212ENST00000620787 FAM168BA1KXE4 195 aa12.63□□□□□ -0.39
PDLIM3-212ENST00000620787 FAM30AQ9NZY2 134 aa12.63□□□□□ -0.39
PDLIM3-212ENST00000620787 IGLV1-50A0A075B6I6 118 aa12.62□□□□□ -0.39
PDLIM3-212ENST00000620787 SPRR1AP35321 89 aa12.62□□□□□ -0.39
PDLIM3-212ENST00000620787 ST20-AS1Q8NBB2 130 aa12.62□□□□□ -0.39
PDLIM3-212ENST00000620787 Q8NBF4 154 aa12.62□□□□□ -0.39
PDLIM3-212ENST00000620787 IGLV5-37A0A075B6J1 123 aa12.61□□□□□ -0.39
PDLIM3-212ENST00000620787 LCE6AA0A183 80 aa12.61□□□□□ -0.39
PDLIM3-212ENST00000620787 ETDCA0A1B0GVM5 59 aa12.6□□□□□ -0.39
PDLIM3-212ENST00000620787 KRTAP10-11P60412 298 aa12.59□□□□□ -0.39
PDLIM3-212ENST00000620787 KRTAP7-1Q8IUC3 87 aa12.59□□□□□ -0.39
PDLIM3-212ENST00000620787 SPRR4Q96PI1 79 aa12.59□□□□□ -0.39
PDLIM3-212ENST00000620787 TENM3Q9P273 2699 aa12.58□□□□□ -0.4
PDLIM3-212ENST00000620787 DEFB131BA0A096LNP1 70 aa12.58□□□□□ -0.4
PDLIM3-212ENST00000620787 DNAH10OSP0CZ25 163 aa12.57□□□□□ -0.4
PDLIM3-212ENST00000620787 OXLD1Q5BKU9 147 aa12.57□□□□□ -0.4
PDLIM3-212ENST00000620787 DSCR10P59022 87 aa12.57□□□□□ -0.4
PDLIM3-212ENST00000620787 MPLKIPQ8TAP9 179 aa12.55□□□□□ -0.4
PDLIM3-212ENST00000620787 CASC10Q5T4H9 136 aa12.54□□□□□ -0.4
PDLIM3-212ENST00000620787 K7EQZ3 153 aa12.52□□□□□ -0.41
PDLIM3-212ENST00000620787 C11orf45Q8TAV5 145 aa12.51□□□□□ -0.41
PDLIM3-212ENST00000620787 ZCCHC13Q8WW36 166 aaKnown RBP12.51□□□□□ -0.41
PDLIM3-212ENST00000620787 ANK2Q01484 3957 aa12.5□□□□□ -0.41
PDLIM3-212ENST00000620787 MRPL55Q7Z7F7 128 aaKnown RBP12.5□□□□□ -0.41
PDLIM3-212ENST00000620787 UBE2BP63146 152 aa12.48□□□□□ -0.41
PDLIM3-212ENST00000620787 DNAH1Q9P2D7 4330 aa12.47□□□□□ -0.41
PDLIM3-212ENST00000620787 hDV103S1A0JD37 113 aa12.47□□□□□ -0.41
PDLIM3-212ENST00000620787 BRK1Q8WUW1 75 aa12.47□□□□□ -0.41
PDLIM3-212ENST00000620787 LINC00476Q8WZB0 136 aa12.45□□□□□ -0.42
PDLIM3-212ENST00000620787 LINC00588Q9Y4M8 146 aa12.44□□□□□ -0.42
PDLIM3-212ENST00000620787 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.43□□□□□ -0.42
PDLIM3-212ENST00000620787 HCG22E2RYF7 251 aa12.43□□□□□ -0.42
PDLIM3-212ENST00000620787 REG3GQ6UW15 175 aa12.43□□□□□ -0.42
PDLIM3-212ENST00000620787 A0A0G2JQZ4 141 aa12.42□□□□□ -0.42
PDLIM3-212ENST00000620787 A0A1W2PNN7 141 aa12.42□□□□□ -0.42
PDLIM3-212ENST00000620787 PSCAO43653 123 aa12.41□□□□□ -0.42
PDLIM3-212ENST00000620787 C1orf64Q8NEQ6 169 aa12.41□□□□□ -0.42
PDLIM3-212ENST00000620787 IGFL1Q6UW32 110 aa12.4□□□□□ -0.42
PDLIM3-212ENST00000620787 PKIGQ9Y2B9 76 aa12.4□□□□□ -0.43
PDLIM3-212ENST00000620787 CMYA5Q8N3K9 4069 aa12.38□□□□□ -0.43
PDLIM3-212ENST00000620787 LRCOL1A6NCL2 159 aa12.36□□□□□ -0.43
PDLIM3-212ENST00000620787 DEFB116Q30KQ4 102 aa12.35□□□□□ -0.43
PDLIM3-212ENST00000620787 CYP4F30PQ9H0H9 118 aa12.34□□□□□ -0.43
PDLIM3-212ENST00000620787 IGLV8-61A0A075B6I0 122 aa12.33□□□□□ -0.44
PDLIM3-212ENST00000620787 Q1T7F1 81 aa12.33□□□□□ -0.44
PDLIM3-212ENST00000620787 FLNBO75369 2602 aaKnown RBP12.32□□□□□ -0.44
PDLIM3-212ENST00000620787 DNAH3Q8TD57 4116 aa12.32□□□□□ -0.44
PDLIM3-212ENST00000620787 F8P00451 2351 aa12.32□□□□□ -0.44
PDLIM3-212ENST00000620787 WFDC13Q8IUB5 93 aa12.32□□□□□ -0.44
PDLIM3-212ENST00000620787 A0A087WSZ3 146 aa12.31□□□□□ -0.44
PDLIM3-212ENST00000620787 PRLHP81277 87 aa12.31□□□□□ -0.44
PDLIM3-212ENST00000620787 BAHCC1Q9P281 2608 aa12.3□□□□□ -0.44
PDLIM3-212ENST00000620787 PRR4Q16378 134 aa12.29□□□□□ -0.44
PDLIM3-212ENST00000620787 A0A096LNI7 61 aa12.28□□□□□ -0.44
PDLIM3-212ENST00000620787 RPL37AP61513 92 aaKnown RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms