RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 TRGC2P03986 189 aa6.74□□□□□ -1.33
UPF3B-204ENST00000619445 HINT1P49773 126 aaPredicted RBP6.74□□□□□ -1.33
UPF3B-204ENST00000619445 SEC61BP60468 96 aaKnown RBP6.74□□□□□ -1.33
UPF3B-204ENST00000619445 SERF1AO75920 110 aa6.73□□□□□ -1.33
UPF3B-204ENST00000619445 IGLV6-57P01721 117 aa6.73□□□□□ -1.33
UPF3B-204ENST00000619445 TSPEAR-AS2P59090 65 aa6.73□□□□□ -1.33
UPF3B-204ENST00000619445 MOBPQ13875 183 aa6.73□□□□□ -1.33
UPF3B-204ENST00000619445 ASB16-AS1Q495Z4 193 aa6.73□□□□□ -1.33
UPF3B-204ENST00000619445 KRTAP9-2Q9BYQ4 174 aa6.73□□□□□ -1.33
UPF3B-204ENST00000619445 TRAV23DV6A0A075B6W5 121 aa6.72□□□□□ -1.33
UPF3B-204ENST00000619445 IGLV9-49A0A0B4J1Y8 123 aa6.72□□□□□ -1.33
UPF3B-204ENST00000619445 Q9BRP9 147 aa6.71□□□□□ -1.33
UPF3B-204ENST00000619445 ZNF73O43830 326 aaPredicted RBP6.7□□□□□ -1.34
UPF3B-204ENST00000619445 ERC2-IT1O76042 136 aa6.7□□□□□ -1.34
UPF3B-204ENST00000619445 FABP4P15090 132 aa6.7□□□□□ -1.34
UPF3B-204ENST00000619445 SLC25A34Q6PIV7 304 aa6.7□□□□□ -1.34
UPF3B-204ENST00000619445 Q8N377 158 aa6.7□□□□□ -1.34
UPF3B-204ENST00000619445 E9PLD3 99 aa6.69□□□□□ -1.34
UPF3B-204ENST00000619445 LINC00310P59036 64 aa6.69□□□□□ -1.34
UPF3B-204ENST00000619445 C9orf153Q5TBE3 101 aa6.69□□□□□ -1.34
UPF3B-204ENST00000619445 A0A0J9YXY3 114 aa6.68□□□□□ -1.34
UPF3B-204ENST00000619445 LINC01547P58512 204 aaPredicted RBP6.68□□□□□ -1.34
UPF3B-204ENST00000619445 SPANXCQ9NY87 97 aa6.68□□□□□ -1.34
UPF3B-204ENST00000619445 H3BS24 57 aa6.67□□□□□ -1.34
UPF3B-204ENST00000619445 TIMM17BO60830 172 aa6.67□□□□□ -1.34
UPF3B-204ENST00000619445 PMCHL2Q9BQD1 86 aa6.67□□□□□ -1.34
UPF3B-204ENST00000619445 DHRS4-AS1Q9P1J3 65 aa6.67□□□□□ -1.34
UPF3B-204ENST00000619445 LIMD2Q9BT23 127 aa6.66□□□□□ -1.34
UPF3B-204ENST00000619445 SPRR1BP22528 89 aa6.64□□□□□ -1.35
UPF3B-204ENST00000619445 ADAMTSL4-AS1Q5T5F5 129 aa6.64□□□□□ -1.35
UPF3B-204ENST00000619445 XP32Q5T750 250 aa6.64□□□□□ -1.35
UPF3B-204ENST00000619445 SOSTDC1Q6X4U4 206 aa6.64□□□□□ -1.35
UPF3B-204ENST00000619445 LINC00518Q8N0U6 118 aa6.64□□□□□ -1.35
UPF3B-204ENST00000619445 SPANXDQ9BXN6 97 aa6.64□□□□□ -1.35
UPF3B-204ENST00000619445 COLCA2A8K830 154 aa6.63□□□□□ -1.35
UPF3B-204ENST00000619445 SYS1-DBNDD2H3BUS1 97 aa6.63□□□□□ -1.35
UPF3B-204ENST00000619445 NPC2P61916 151 aa6.63□□□□□ -1.35
UPF3B-204ENST00000619445 OR13C6PQ8NH95 151 aa6.63□□□□□ -1.35
UPF3B-204ENST00000619445 LINC00308Q8TCZ7 52 aa6.63□□□□□ -1.35
UPF3B-204ENST00000619445 COPS9Q8WXC6 57 aa6.63□□□□□ -1.35
UPF3B-204ENST00000619445 LAMTOR3Q9UHA4 124 aa6.63□□□□□ -1.35
UPF3B-204ENST00000619445 PET117Q6UWS5 81 aa6.61□□□□□ -1.35
UPF3B-204ENST00000619445 ST20-AS1Q8NBB2 130 aa6.61□□□□□ -1.35
UPF3B-204ENST00000619445 LINC01545Q5VT33 79 aa6.6□□□□□ -1.35
UPF3B-204ENST00000619445 LITAFQ99732 161 aa6.6□□□□□ -1.35
UPF3B-204ENST00000619445 ZNF815PA8K554 130 aa6.59□□□□□ -1.35
UPF3B-204ENST00000619445 CD164Q04900 197 aa6.59□□□□□ -1.35
UPF3B-204ENST00000619445 TRBV7-6A0A0J9YX20 115 aa6.58□□□□□ -1.36
UPF3B-204ENST00000619445 COX7BP24311 80 aa6.58□□□□□ -1.36
UPF3B-204ENST00000619445 ELOF1P60002 83 aaKnown RBP6.58□□□□□ -1.36
UPF3B-204ENST00000619445 KRTAP9-6A0A140TA67 174 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 TEX49A0A1B0GTD5 131 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BKO60814 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BJP06899 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BOP23527 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BBP33778 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 AKR1D1P51857 326 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BDP58876 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BCP62807 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 TAL2Q16559 108 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST2H2BEQ16778 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BHQ93079 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BNQ99877 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 HIST1H2BMQ99879 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 PRO1933Q9H354 126 aa6.57□□□□□ -1.36
UPF3B-204ENST00000619445 IFITM1P13164 125 aa6.56□□□□□ -1.36
UPF3B-204ENST00000619445 C6orf99Q4VX62 202 aa6.56□□□□□ -1.36
UPF3B-204ENST00000619445 Q6ZVH6 145 aa6.56□□□□□ -1.36
UPF3B-204ENST00000619445 A0A1B0GWB2 263 aa6.55□□□□□ -1.36
UPF3B-204ENST00000619445 Q5XG85 94 aa6.55□□□□□ -1.36
UPF3B-204ENST00000619445 SCGB1D4Q6XE38 83 aa6.55□□□□□ -1.36
UPF3B-204ENST00000619445 KRTAP4-1Q9BYQ7 146 aa6.55□□□□□ -1.36
UPF3B-204ENST00000619445 LOC100996750A0A140TA64 210 aa6.54□□□□□ -1.36
UPF3B-204ENST00000619445 C20orf202A1L168 122 aa6.54□□□□□ -1.36
UPF3B-204ENST00000619445 A4D1N5 150 aa6.54□□□□□ -1.36
UPF3B-204ENST00000619445 H7C2G1 150 aa6.54□□□□□ -1.36
UPF3B-204ENST00000619445 SLC7A5P1Q8MH63 180 aa6.54□□□□□ -1.36
UPF3B-204ENST00000619445 KRTAP4-6Q9BYQ5 205 aa6.54□□□□□ -1.36
UPF3B-204ENST00000619445 HRCT1Q6UXD1 115 aa6.53□□□□□ -1.36
UPF3B-204ENST00000619445 NHP2Q9NX24 153 aaKnown RBP6.53□□□□□ -1.36
UPF3B-204ENST00000619445 C3orf79P0CE67 100 aa6.52□□□□□ -1.37
UPF3B-204ENST00000619445 Q1RN00 199 aa6.51□□□□□ -1.37
UPF3B-204ENST00000619445 DEFB105AQ8NG35 78 aa6.51□□□□□ -1.37
UPF3B-204ENST00000619445 IGLV5-48A0A075B6I7 105 aa6.5□□□□□ -1.37
UPF3B-204ENST00000619445 A6NDN8 102 aa6.5□□□□□ -1.37
UPF3B-204ENST00000619445 KRTDAPP60985 99 aa6.5□□□□□ -1.37
UPF3B-204ENST00000619445 COA6Q5JTJ3 125 aaKnown RBP6.5□□□□□ -1.37
UPF3B-204ENST00000619445 TRAV13-2A0A0B4J235 113 aa6.49□□□□□ -1.37
UPF3B-204ENST00000619445 TTTY13Q9BZ97 58 aa6.49□□□□□ -1.37
UPF3B-204ENST00000619445 IGLV8-61A0A075B6I0 122 aa6.48□□□□□ -1.37
UPF3B-204ENST00000619445 C9orf92A6NGG3 77 aa6.48□□□□□ -1.37
UPF3B-204ENST00000619445 CFC1BP0CG36 223 aa6.48□□□□□ -1.37
UPF3B-204ENST00000619445 PCOTHQ58A44 107 aa6.48□□□□□ -1.37
UPF3B-204ENST00000619445 TCL1BO95988 128 aa6.47□□□□□ -1.37
UPF3B-204ENST00000619445 SNRPEP62304 92 aaKnown RBP6.47□□□□□ -1.37
UPF3B-204ENST00000619445 VAMP3Q15836 100 aa6.46□□□□□ -1.37
UPF3B-204ENST00000619445 SMIM29Q86T20 159 aa6.46□□□□□ -1.37
UPF3B-204ENST00000619445 F8WEM9 126 aa6.45□□□□□ -1.38
UPF3B-204ENST00000619445 C1orf195Q5TG92 126 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms