RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 K7EIL1 84 aa9.73□□□□□ -0.85
SHROOM1-208ENST00000617339 SEC61GP60059 68 aa9.72□□□□□ -0.85
SHROOM1-208ENST00000617339 Q6ZVQ6 151 aa9.72□□□□□ -0.85
SHROOM1-208ENST00000617339 Q8IZM0 81 aa9.72□□□□□ -0.85
SHROOM1-208ENST00000617339 Q8NDZ9 215 aa9.72□□□□□ -0.85
SHROOM1-208ENST00000617339 TM2D3Q9BRN9 247 aa9.71□□□□□ -0.85
SHROOM1-208ENST00000617339 KIAA0087Q14695 138 aa9.71□□□□□ -0.85
SHROOM1-208ENST00000617339 Q6ZQT0 140 aa9.7□□□□□ -0.86
SHROOM1-208ENST00000617339 NKAPP1Q8N9T2 125 aa9.7□□□□□ -0.86
SHROOM1-208ENST00000617339 Q6ZQY7 126 aa9.7□□□□□ -0.86
SHROOM1-208ENST00000617339 FP248Q71RG6 208 aaPredicted RBP9.69□□□□□ -0.86
SHROOM1-208ENST00000617339 SMIM26A0A096LP01 95 aa9.69□□□□□ -0.86
SHROOM1-208ENST00000617339 Q8N9L7 120 aa9.68□□□□□ -0.86
SHROOM1-208ENST00000617339 DEFB105AQ8NG35 78 aa9.68□□□□□ -0.86
SHROOM1-208ENST00000617339 TRBV7-6A0A0J9YX20 115 aa9.67□□□□□ -0.86
SHROOM1-208ENST00000617339 LINC00167Q96N53 147 aa9.67□□□□□ -0.86
SHROOM1-208ENST00000617339 LINC00575Q6W349 94 aa9.66□□□□□ -0.86
SHROOM1-208ENST00000617339 TRBV10-3A0A0K0K1G6 114 aa9.65□□□□□ -0.86
SHROOM1-208ENST00000617339 COL7A1Q02388 2944 aa9.64□□□□□ -0.87
SHROOM1-208ENST00000617339 C6orf48Q9UBA6 75 aa9.64□□□□□ -0.87
SHROOM1-208ENST00000617339 Q6ZRU5 148 aa9.63□□□□□ -0.87
SHROOM1-208ENST00000617339 KLKP1Q107X0 134 aa9.63□□□□□ -0.87
SHROOM1-208ENST00000617339 CASC10Q5T4H9 136 aa9.63□□□□□ -0.87
SHROOM1-208ENST00000617339 PRR4Q16378 134 aa9.62□□□□□ -0.87
SHROOM1-208ENST00000617339 SYCNQ0VAF6 134 aa9.62□□□□□ -0.87
SHROOM1-208ENST00000617339 NREPQ16612 68 aa9.61□□□□□ -0.87
SHROOM1-208ENST00000617339 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.61□□□□□ -0.87
SHROOM1-208ENST00000617339 FAM229BQ4G0N7 80 aa9.61□□□□□ -0.87
SHROOM1-208ENST00000617339 TGP01266 2768 aa9.6□□□□□ -0.87
SHROOM1-208ENST00000617339 RPL37AP8A6NKH3 93 aa9.6□□□□□ -0.87
SHROOM1-208ENST00000617339 MUC7Q8TAX7 377 aa9.6□□□□□ -0.87
SHROOM1-208ENST00000617339 UBE2BP63146 152 aa9.58□□□□□ -0.88
SHROOM1-208ENST00000617339 LINC00588Q9Y4M8 146 aa9.58□□□□□ -0.88
SHROOM1-208ENST00000617339 BPY2O14599 106 aa9.57□□□□□ -0.88
SHROOM1-208ENST00000617339 TMEM254Q8TBM7 123 aa9.57□□□□□ -0.88
SHROOM1-208ENST00000617339 PRR34Q9NV39 138 aa9.57□□□□□ -0.88
SHROOM1-208ENST00000617339 LY6G6CO95867 125 aa9.57□□□□□ -0.88
SHROOM1-208ENST00000617339 LOC110117498A0A087WWA1 95 aa9.57□□□□□ -0.88
SHROOM1-208ENST00000617339 EPM2AB3EWF7 344 aa9.57□□□□□ -0.88
SHROOM1-208ENST00000617339 EGFEM1PQ0D2K5 195 aa9.56□□□□□ -0.88
SHROOM1-208ENST00000617339 SRRM2Q9UQ35 2752 aaKnown RBP9.55□□□□□ -0.88
SHROOM1-208ENST00000617339 FUSP35637 526 aaKnown RBP eCLIP9.55□□□□□ -0.88
SHROOM1-208ENST00000617339 PSPHP1O15172 72 aa9.54□□□□□ -0.88
SHROOM1-208ENST00000617339 C3orf84H3BNL1 204 aa9.54□□□□□ -0.88
SHROOM1-208ENST00000617339 TRBV7-4A0A0J9YYF1 115 aa9.54□□□□□ -0.88
SHROOM1-208ENST00000617339 CXCL6P80162 114 aa9.53□□□□□ -0.88
SHROOM1-208ENST00000617339 C15orf56Q8N910 161 aa9.53□□□□□ -0.88
SHROOM1-208ENST00000617339 Q6ZRP5 223 aa9.52□□□□□ -0.89
SHROOM1-208ENST00000617339 DIRC1Q969H9 104 aa9.52□□□□□ -0.89
SHROOM1-208ENST00000617339 HIGD2AQ9BW72 106 aa9.52□□□□□ -0.89
SHROOM1-208ENST00000617339 FAM168BA1KXE4 195 aa9.52□□□□□ -0.89
SHROOM1-208ENST00000617339 COX17Q14061 63 aa9.52□□□□□ -0.89
SHROOM1-208ENST00000617339 A0A096LNI7 61 aa9.51□□□□□ -0.89
SHROOM1-208ENST00000617339 ETDCA0A1B0GVM5 59 aa9.51□□□□□ -0.89
SHROOM1-208ENST00000617339 LYSTQ99698 3801 aa9.51□□□□□ -0.89
SHROOM1-208ENST00000617339 SPTSSBQ8NFR3 76 aa9.5□□□□□ -0.89
SHROOM1-208ENST00000617339 BCE1O60756 84 aa9.5□□□□□ -0.89
SHROOM1-208ENST00000617339 F8WDY8 70 aa9.5□□□□□ -0.89
SHROOM1-208ENST00000617339 NDUFC1O43677 76 aa9.5□□□□□ -0.89
SHROOM1-208ENST00000617339 COX7BP24311 80 aa9.49□□□□□ -0.89
SHROOM1-208ENST00000617339 PRYO14603 147 aa9.49□□□□□ -0.89
SHROOM1-208ENST00000617339 FAM30AQ9NZY2 134 aa9.48□□□□□ -0.89
SHROOM1-208ENST00000617339 PDE6GP18545 87 aa9.48□□□□□ -0.89
SHROOM1-208ENST00000617339 LINC01556Q5JQF7 62 aa9.48□□□□□ -0.89
SHROOM1-208ENST00000617339 ZNF73O43830 326 aaPredicted RBP9.48□□□□□ -0.89
SHROOM1-208ENST00000617339 IGLV6-57P01721 117 aa9.46□□□□□ -0.89
SHROOM1-208ENST00000617339 SERTAD4-AS1Q5TG53 156 aa9.45□□□□□ -0.9
SHROOM1-208ENST00000617339 PMAIP1Q13794 54 aa9.44□□□□□ -0.9
SHROOM1-208ENST00000617339 KRTAP26-1Q6PEX3 210 aa9.43□□□□□ -0.9
SHROOM1-208ENST00000617339 IGKV4-1P06312 121 aa9.43□□□□□ -0.9
SHROOM1-208ENST00000617339 ATP5EP56381 51 aaPredicted RBP9.43□□□□□ -0.9
SHROOM1-208ENST00000617339 CMYA5Q8N3K9 4069 aa9.42□□□□□ -0.9
SHROOM1-208ENST00000617339 B9D2Q9BPU9 175 aa9.41□□□□□ -0.9
SHROOM1-208ENST00000617339 VPREB1P12018 145 aa9.41□□□□□ -0.9
SHROOM1-208ENST00000617339 DNAH10OSP0CZ25 163 aa9.41□□□□□ -0.9
SHROOM1-208ENST00000617339 H3BNG1 76 aa9.4□□□□□ -0.9
SHROOM1-208ENST00000617339 CHTF8P0CG12 524 aa9.4□□□□□ -0.9
SHROOM1-208ENST00000617339 SMIM29Q86T20 159 aa9.4□□□□□ -0.9
SHROOM1-208ENST00000617339 NUPR2A6NF83 97 aa9.39□□□□□ -0.91
SHROOM1-208ENST00000617339 KRTAP1-5Q9BYS1 174 aa9.39□□□□□ -0.91
SHROOM1-208ENST00000617339 OCR1Q9BZK8 76 aa9.39□□□□□ -0.91
SHROOM1-208ENST00000617339 MRPL55Q7Z7F7 128 aaKnown RBP9.38□□□□□ -0.91
SHROOM1-208ENST00000617339 C7orf33Q8WU49 177 aa9.38□□□□□ -0.91
SHROOM1-208ENST00000617339 HUWE1Q7Z6Z7 4374 aaKnown RBP9.38□□□□□ -0.91
SHROOM1-208ENST00000617339 DNAH10Q8IVF4 4471 aa9.37□□□□□ -0.91
SHROOM1-208ENST00000617339 M0R378 163 aa9.37□□□□□ -0.91
SHROOM1-208ENST00000617339 ELOF1P60002 83 aaKnown RBP9.37□□□□□ -0.91
SHROOM1-208ENST00000617339 A0A0G2JQZ4 141 aa9.36□□□□□ -0.91
SHROOM1-208ENST00000617339 A0A1W2PNN7 141 aa9.36□□□□□ -0.91
SHROOM1-208ENST00000617339 UBE2AP49459 152 aa9.36□□□□□ -0.91
SHROOM1-208ENST00000617339 ST20-AS1Q8NBB2 130 aa9.33□□□□□ -0.92
SHROOM1-208ENST00000617339 GVQW2A0A096LPI5 108 aaPredicted RBP9.33□□□□□ -0.92
SHROOM1-208ENST00000617339 PRLHP81277 87 aa9.33□□□□□ -0.92
SHROOM1-208ENST00000617339 H3BQ85 93 aa9.32□□□□□ -0.92
SHROOM1-208ENST00000617339 ERC2-IT1O76042 136 aa9.31□□□□□ -0.92
SHROOM1-208ENST00000617339 C1orf64Q8NEQ6 169 aa9.31□□□□□ -0.92
SHROOM1-208ENST00000617339 MEGF8Q7Z7M0 2845 aa9.31□□□□□ -0.92
SHROOM1-208ENST00000617339 CHKB-CPT1BH3BT56 60 aa9.3□□□□□ -0.92
SHROOM1-208ENST00000617339 LINC00528Q8N1L1 170 aa9.3□□□□□ -0.92
SHROOM1-208ENST00000617339 DEFB116Q30KQ4 102 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms