RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 NKAPP1Q8N9T2 125 aa6.91□□□□□ -1.3
VPS39-214ENST00000614932 PRR15LQ9BU68 103 aa6.91□□□□□ -1.3
VPS39-214ENST00000614932 TRRAPQ9Y4A5 3859 aa6.9□□□□□ -1.3
VPS39-214ENST00000614932 INAFM1C9JVW0 142 aa6.9□□□□□ -1.3
VPS39-214ENST00000614932 CELA1Q9UNI1 258 aa6.9□□□□□ -1.3
VPS39-214ENST00000614932 Q6ZQY7 126 aa6.9□□□□□ -1.31
VPS39-214ENST00000614932 A6NED7 52 aa6.89□□□□□ -1.31
VPS39-214ENST00000614932 LINC00612Q8N6U2 182 aa6.89□□□□□ -1.31
VPS39-214ENST00000614932 A8MTW9 85 aa6.89□□□□□ -1.31
VPS39-214ENST00000614932 Q75L30 129 aa6.89□□□□□ -1.31
VPS39-214ENST00000614932 SMIM29Q86T20 159 aa6.89□□□□□ -1.31
VPS39-214ENST00000614932 ATRQ13535 2644 aa6.89□□□□□ -1.31
VPS39-214ENST00000614932 IGHV3OR16-9A0A0B4J2B5 98 aa6.88□□□□□ -1.31
VPS39-214ENST00000614932 PRB2P02812 416 aaPredicted RBP6.88□□□□□ -1.31
VPS39-214ENST00000614932 GIG44P09565 113 aaPredicted RBP6.88□□□□□ -1.31
VPS39-214ENST00000614932 COX7BP24311 80 aa6.88□□□□□ -1.31
VPS39-214ENST00000614932 HIVEP1P15822 2718 aa6.88□□□□□ -1.31
VPS39-214ENST00000614932 LOC100131303A0A0U1RQF7 123 aa6.87□□□□□ -1.31
VPS39-214ENST00000614932 CDC42SE1Q9NRR8 79 aa6.87□□□□□ -1.31
VPS39-214ENST00000614932 FLNBO75369 2602 aaKnown RBP6.86□□□□□ -1.31
VPS39-214ENST00000614932 TRGV2A0A075B6R0 118 aa6.86□□□□□ -1.31
VPS39-214ENST00000614932 IGKV3OR2-268A0A0C4DH90 116 aa6.86□□□□□ -1.31
VPS39-214ENST00000614932 NDUFB1O75438 58 aa6.86□□□□□ -1.31
VPS39-214ENST00000614932 IGLV1-51P01701 117 aa6.86□□□□□ -1.31
VPS39-214ENST00000614932 NSD1Q96L73 2696 aaPredicted RBP6.85□□□□□ -1.31
VPS39-214ENST00000614932 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.85□□□□□ -1.31
VPS39-214ENST00000614932 C10orf25Q5T742 122 aa6.85□□□□□ -1.31
VPS39-214ENST00000614932 B9D2Q9BPU9 175 aa6.85□□□□□ -1.31
VPS39-214ENST00000614932 ELOF1P60002 83 aaKnown RBP6.84□□□□□ -1.31
VPS39-214ENST00000614932 C19orf73Q9NVV2 129 aa6.84□□□□□ -1.31
VPS39-214ENST00000614932 ETDCA0A1B0GVM5 59 aa6.84□□□□□ -1.31
VPS39-214ENST00000614932 DEFB130BP0DP73 79 aa6.84□□□□□ -1.31
VPS39-214ENST00000614932 DEFB130AP0DP74 79 aa6.84□□□□□ -1.31
VPS39-214ENST00000614932 MOBPQ13875 183 aa6.84□□□□□ -1.31
VPS39-214ENST00000614932 DEFB4AO15263 64 aa6.83□□□□□ -1.32
VPS39-214ENST00000614932 LOC101927531A0A1B0GV80 90 aa6.82□□□□□ -1.32
VPS39-214ENST00000614932 MDFIQ99750 246 aa6.82□□□□□ -1.32
VPS39-214ENST00000614932 VPREB1P12018 145 aa6.82□□□□□ -1.32
VPS39-214ENST00000614932 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.82□□□□□ -1.32
VPS39-214ENST00000614932 LINC00208Q96KT6 92 aa6.82□□□□□ -1.32
VPS39-214ENST00000614932 A0A096LPF7 62 aa6.81□□□□□ -1.32
VPS39-214ENST00000614932 TRGV4A0A0C4DH28 118 aa6.81□□□□□ -1.32
VPS39-214ENST00000614932 C9orf116Q5BN46 136 aaPredicted RBP6.81□□□□□ -1.32
VPS39-214ENST00000614932 Q8IZM0 81 aa6.81□□□□□ -1.32
VPS39-214ENST00000614932 COX17Q14061 63 aa6.8□□□□□ -1.32
VPS39-214ENST00000614932 HIGD2BQ4VC39 106 aa6.8□□□□□ -1.32
VPS39-214ENST00000614932 LINC01554Q52M75 96 aa6.8□□□□□ -1.32
VPS39-214ENST00000614932 TEP1Q99973 2627 aaKnown RBP6.8□□□□□ -1.32
VPS39-214ENST00000614932 CSNK1G2-AS1Q8NCQ2 148 aa6.8□□□□□ -1.32
VPS39-214ENST00000614932 Q9BRP9 147 aa6.8□□□□□ -1.32
VPS39-214ENST00000614932 KLK12Q9UKR0 248 aa6.79□□□□□ -1.32
VPS39-214ENST00000614932 ST20-AS1Q8NBB2 130 aa6.79□□□□□ -1.32
VPS39-214ENST00000614932 Q8NDZ9 215 aa6.78□□□□□ -1.32
VPS39-214ENST00000614932 C16orf74Q96GX8 76 aa6.78□□□□□ -1.32
VPS39-214ENST00000614932 F8P00451 2351 aa6.78□□□□□ -1.32
VPS39-214ENST00000614932 LINC00313P59037 77 aa6.77□□□□□ -1.33
VPS39-214ENST00000614932 DEFB135Q30KP9 77 aa6.77□□□□□ -1.33
VPS39-214ENST00000614932 IGLV6-57P01721 117 aa6.76□□□□□ -1.33
VPS39-214ENST00000614932 IGHV4-30-4P0DP06 118 aa6.76□□□□□ -1.33
VPS39-214ENST00000614932 LINC00959A0A1B0GUT2 108 aa6.76□□□□□ -1.33
VPS39-214ENST00000614932 C3orf84H3BNL1 204 aa6.76□□□□□ -1.33
VPS39-214ENST00000614932 SPANXA2-OT1Q8N9U9 137 aa6.76□□□□□ -1.33
VPS39-214ENST00000614932 CLPSL2Q6UWE3 100 aa6.75□□□□□ -1.33
VPS39-214ENST00000614932 CMC4P56277 68 aaPredicted RBP6.74□□□□□ -1.33
VPS39-214ENST00000614932 SERTAD4-AS1Q5TG53 156 aa6.74□□□□□ -1.33
VPS39-214ENST00000614932 PRAC1Q96KF2 57 aa6.74□□□□□ -1.33
VPS39-214ENST00000614932 GYPEP15421 78 aa6.72□□□□□ -1.33
VPS39-214ENST00000614932 HTN3P15516 51 aa6.72□□□□□ -1.33
VPS39-214ENST00000614932 MP68P56378 58 aa6.72□□□□□ -1.33
VPS39-214ENST00000614932 X6R8D5 127 aa6.72□□□□□ -1.33
VPS39-214ENST00000614932 IGHV4-28A0A0C4DH34 117 aa6.72□□□□□ -1.33
VPS39-214ENST00000614932 KCNQ1DNQ9H478 68 aa6.71□□□□□ -1.34
VPS39-214ENST00000614932 STAB1Q9NY15 2570 aa6.71□□□□□ -1.34
VPS39-214ENST00000614932 KIAA0087Q14695 138 aa6.7□□□□□ -1.34
VPS39-214ENST00000614932 CASC2Q6XLA1 102 aa6.7□□□□□ -1.34
VPS39-214ENST00000614932 FBN1P35555 2871 aaKnown RBP6.7□□□□□ -1.34
VPS39-214ENST00000614932 PKD1L1Q8TDX9 2849 aa6.7□□□□□ -1.34
VPS39-214ENST00000614932 A0A1B0GW54 56 aa6.68□□□□□ -1.34
VPS39-214ENST00000614932 LINC01558Q9Y6Z2 57 aa6.68□□□□□ -1.34
VPS39-214ENST00000614932 IGLV10-54A0A075B6I4 117 aa6.67□□□□□ -1.34
VPS39-214ENST00000614932 COA5Q86WW8 74 aa6.67□□□□□ -1.34
VPS39-214ENST00000614932 MAST4O15021 2626 aa6.67□□□□□ -1.34
VPS39-214ENST00000614932 PLA2G1BP04054 148 aaKnown RBP6.67□□□□□ -1.34
VPS39-214ENST00000614932 DSCR10P59022 87 aa6.66□□□□□ -1.34
VPS39-214ENST00000614932 SPAG11BQ08648 103 aa6.66□□□□□ -1.34
VPS39-214ENST00000614932 ANK2Q01484 3957 aa6.66□□□□□ -1.34
VPS39-214ENST00000614932 K7EQZ3 153 aa6.66□□□□□ -1.34
VPS39-214ENST00000614932 PLAC8Q9NZF1 115 aa6.66□□□□□ -1.34
VPS39-214ENST00000614932 SPINK7P58062 85 aa6.65□□□□□ -1.34
VPS39-214ENST00000614932 ADM2Q7Z4H4 148 aa6.64□□□□□ -1.35
VPS39-214ENST00000614932 PRO0255Q9UI72 69 aa6.64□□□□□ -1.35
VPS39-214ENST00000614932 NOTCH1P46531 2555 aa6.64□□□□□ -1.35
VPS39-214ENST00000614932 H3BPC8 53 aa6.64□□□□□ -1.35
VPS39-214ENST00000614932 KPRPQ5T749 579 aaPredicted RBP6.63□□□□□ -1.35
VPS39-214ENST00000614932 ASB16-AS1Q495Z4 193 aa6.62□□□□□ -1.35
VPS39-214ENST00000614932 IGLV5-48A0A075B6I7 105 aa6.62□□□□□ -1.35
VPS39-214ENST00000614932 ANGP03950 147 aaKnown RBP6.62□□□□□ -1.35
VPS39-214ENST00000614932 Q8NAQ8 132 aa6.62□□□□□ -1.35
VPS39-214ENST00000614932 SPAG11AQ6PDA7 123 aa6.61□□□□□ -1.35
VPS39-214ENST00000614932 LINC00528Q8N1L1 170 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms