RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 Q6ZRX8 168 aa4.28□□□□□ -1.72
CUX1-219ENST00000606749 SPANXB1Q9NS25 103 aaPredicted RBP4.28□□□□□ -1.72
CUX1-219ENST00000606749 EIF4EBP3O60516 100 aaPredicted RBP4.27□□□□□ -1.73
CUX1-219ENST00000606749 RPS29P62273 56 aaKnown RBP4.27□□□□□ -1.73
CUX1-219ENST00000606749 ASB16-AS1Q495Z4 193 aa4.27□□□□□ -1.73
CUX1-219ENST00000606749 ADAMTSL4-AS1Q5T5F5 129 aa4.27□□□□□ -1.73
CUX1-219ENST00000606749 SOSTDC1Q6X4U4 206 aa4.27□□□□□ -1.73
CUX1-219ENST00000606749 Q8N377 158 aa4.27□□□□□ -1.73
CUX1-219ENST00000606749 MIEN1Q9BRT3 115 aa4.27□□□□□ -1.73
CUX1-219ENST00000606749 A0A0J9YXY3 114 aa4.26□□□□□ -1.73
CUX1-219ENST00000606749 COLCA2A8K830 154 aa4.26□□□□□ -1.73
CUX1-219ENST00000606749 JOSD1Q15040 202 aaPredicted RBP4.26□□□□□ -1.73
CUX1-219ENST00000606749 FAT4Q6V0I7 4981 aa4.25□□□□□ -1.73
CUX1-219ENST00000606749 TRAV23DV6A0A075B6W5 121 aa4.25□□□□□ -1.73
CUX1-219ENST00000606749 E9PLD3 99 aa4.25□□□□□ -1.73
CUX1-219ENST00000606749 SLC25A20O43772 301 aa4.25□□□□□ -1.73
CUX1-219ENST00000606749 ZNF73O43830 326 aaPredicted RBP4.25□□□□□ -1.73
CUX1-219ENST00000606749 NPC2P61916 151 aa4.25□□□□□ -1.73
CUX1-219ENST00000606749 KRTAP4-1Q9BYQ7 146 aa4.25□□□□□ -1.73
CUX1-219ENST00000606749 MUC17Q685J3 4493 aa4.24□□□□□ -1.73
CUX1-219ENST00000606749 SEC61BP60468 96 aaKnown RBP4.24□□□□□ -1.73
CUX1-219ENST00000606749 SLC7A5P1Q8MH63 180 aa4.24□□□□□ -1.73
CUX1-219ENST00000606749 ST20-AS1Q8NBB2 130 aa4.24□□□□□ -1.73
CUX1-219ENST00000606749 C5orf52A6NGY3 159 aa4.23□□□□□ -1.73
CUX1-219ENST00000606749 HINT1P49773 126 aaPredicted RBP4.23□□□□□ -1.73
CUX1-219ENST00000606749 C9orf153Q5TBE3 101 aa4.23□□□□□ -1.73
CUX1-219ENST00000606749 SYS1-DBNDD2H3BUS1 97 aa4.22□□□□□ -1.73
CUX1-219ENST00000606749 XP32Q5T750 250 aa4.22□□□□□ -1.73
CUX1-219ENST00000606749 LINC00308Q8TCZ7 52 aa4.22□□□□□ -1.73
CUX1-219ENST00000606749 LITAFQ99732 161 aa4.22□□□□□ -1.73
CUX1-219ENST00000606749 CBY1Q9Y3M2 126 aa4.22□□□□□ -1.73
CUX1-219ENST00000606749 TIMM17BO60830 172 aa4.21□□□□□ -1.74
CUX1-219ENST00000606749 SPRR1BP22528 89 aa4.21□□□□□ -1.74
CUX1-219ENST00000606749 OR13C6PQ8NH95 151 aa4.21□□□□□ -1.74
CUX1-219ENST00000606749 SPANXCQ9NY87 97 aa4.21□□□□□ -1.74
CUX1-219ENST00000606749 LINC01547P58512 204 aaPredicted RBP4.2□□□□□ -1.74
CUX1-219ENST00000606749 LINC01545Q5VT33 79 aa4.2□□□□□ -1.74
CUX1-219ENST00000606749 DHRS4-AS1Q9P1J3 65 aa4.2□□□□□ -1.74
CUX1-219ENST00000606749 TMEM238LA0A1B0GVL6 79 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 ZNF815PA8K554 130 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 HIST1H2BKO60814 126 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 HIST1H2BJP06899 126 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 HIST1H2BOP23527 126 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 HIST1H2BBP33778 126 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 HIST1H2BDP58876 126 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 HIST1H2BCP62807 126 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 HIST2H2BEQ16778 126 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.19□□□□□ -1.74
CUX1-219ENST00000606749 SLC25A34Q6PIV7 304 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 PET117Q6UWS5 81 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 HRCT1Q6UXD1 115 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 HIST1H2BHQ93079 126 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 HIST1H2BNQ99877 126 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 HIST1H2BMQ99879 126 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 SPANXDQ9BXN6 97 aa4.19□□□□□ -1.74
CUX1-219ENST00000606749 KRTAP9-6A0A140TA67 174 aa4.18□□□□□ -1.74
CUX1-219ENST00000606749 LINC00518Q8N0U6 118 aa4.18□□□□□ -1.74
CUX1-219ENST00000606749 TTTY13Q9BZ97 58 aa4.18□□□□□ -1.74
CUX1-219ENST00000606749 LAMTOR3Q9UHA4 124 aa4.18□□□□□ -1.74
CUX1-219ENST00000606749 C3orf79P0CE67 100 aa4.17□□□□□ -1.74
CUX1-219ENST00000606749 COX7BP24311 80 aa4.17□□□□□ -1.74
CUX1-219ENST00000606749 ELOF1P60002 83 aaKnown RBP4.17□□□□□ -1.74
CUX1-219ENST00000606749 TAL2Q16559 108 aa4.17□□□□□ -1.74
CUX1-219ENST00000606749 C6orf99Q4VX62 202 aa4.17□□□□□ -1.74
CUX1-219ENST00000606749 DEFB105AQ8NG35 78 aa4.17□□□□□ -1.74
CUX1-219ENST00000606749 LIMD2Q9BT23 127 aa4.17□□□□□ -1.74
CUX1-219ENST00000606749 TRBV7-6A0A0J9YX20 115 aa4.15□□□□□ -1.75
CUX1-219ENST00000606749 TEX49A0A1B0GTD5 131 aa4.15□□□□□ -1.75
CUX1-219ENST00000606749 CD164Q04900 197 aa4.15□□□□□ -1.75
CUX1-219ENST00000606749 Q1RN00 199 aa4.15□□□□□ -1.75
CUX1-219ENST00000606749 C9orf92A6NGG3 77 aa4.14□□□□□ -1.75
CUX1-219ENST00000606749 AKR1D1P51857 326 aa4.14□□□□□ -1.75
CUX1-219ENST00000606749 KRTDAPP60985 99 aa4.14□□□□□ -1.75
CUX1-219ENST00000606749 PCOTHQ58A44 107 aa4.14□□□□□ -1.75
CUX1-219ENST00000606749 COA6Q5JTJ3 125 aaKnown RBP4.14□□□□□ -1.75
CUX1-219ENST00000606749 SCGB1D4Q6XE38 83 aa4.14□□□□□ -1.75
CUX1-219ENST00000606749 SMIM29Q86T20 159 aa4.14□□□□□ -1.75
CUX1-219ENST00000606749 KRTAP4-8Q9BYQ9 185 aa4.14□□□□□ -1.75
CUX1-219ENST00000606749 PRO1933Q9H354 126 aa4.14□□□□□ -1.75
CUX1-219ENST00000606749 A0A1B0GWB2 263 aa4.13□□□□□ -1.75
CUX1-219ENST00000606749 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.13□□□□□ -1.75
CUX1-219ENST00000606749 H7C2G1 150 aa4.13□□□□□ -1.75
CUX1-219ENST00000606749 IFITM1P13164 125 aa4.13□□□□□ -1.75
CUX1-219ENST00000606749 KRTAP19-2Q3LHN2 52 aa4.13□□□□□ -1.75
CUX1-219ENST00000606749 ANKRD39Q53RE8 183 aa4.13□□□□□ -1.75
CUX1-219ENST00000606749 Q5XG85 94 aa4.13□□□□□ -1.75
CUX1-219ENST00000606749 COPS9Q8WXC6 57 aa4.13□□□□□ -1.75
CUX1-219ENST00000606749 IGLV8-61A0A075B6I0 122 aa4.12□□□□□ -1.75
CUX1-219ENST00000606749 IGLV5-48A0A075B6I7 105 aa4.12□□□□□ -1.75
CUX1-219ENST00000606749 A0A0G2JQZ4 141 aa4.12□□□□□ -1.75
CUX1-219ENST00000606749 A6NDN8 102 aa4.12□□□□□ -1.75
CUX1-219ENST00000606749 Q6ZVH6 145 aa4.12□□□□□ -1.75
CUX1-219ENST00000606749 MUSTN1Q8IVN3 82 aa4.12□□□□□ -1.75
CUX1-219ENST00000606749 A4D1N5 150 aa4.11□□□□□ -1.75
CUX1-219ENST00000606749 C1orf195Q5TG92 126 aa4.11□□□□□ -1.75
CUX1-219ENST00000606749 PCP2Q8IVA1 136 aa4.11□□□□□ -1.75
CUX1-219ENST00000606749 ATOH7Q8N100 152 aa4.11□□□□□ -1.75
CUX1-219ENST00000606749 C20orf202A1L168 122 aa4.1□□□□□ -1.75
CUX1-219ENST00000606749 MT1HP80294 61 aa4.1□□□□□ -1.75
CUX1-219ENST00000606749 SMIM11BQ8TCY0 68 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms