RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	C1orf43	Q9BWL3	253 aa		10.25	□□□□□ -0.77
DDX39A-209	ENST00000589318	PLEC	Q15149	4684 aa	Known RBP	10.25	□□□□□ -0.77
DDX39A-209	ENST00000589318		Q8N814	137 aa		10.25	□□□□□ -0.77
DDX39A-209	ENST00000589318	LOC110117498	A0A087WWA1	95 aa		10.23	□□□□□ -0.77
DDX39A-209	ENST00000589318	PDE6G	P18545	87 aa		10.23	□□□□□ -0.77
DDX39A-209	ENST00000589318	SLPI	P03973	132 aa		10.22	□□□□□ -0.77
DDX39A-209	ENST00000589318	CXCL6	P80162	114 aa		10.22	□□□□□ -0.77
DDX39A-209	ENST00000589318	FBN3	Q75N90	2809 aa		10.21	□□□□□ -0.77
DDX39A-209	ENST00000589318	STARD9	Q9P2P6	4700 aa		10.21	□□□□□ -0.77
DDX39A-209	ENST00000589318	SPAG11B	Q08648	103 aa		10.21	□□□□□ -0.78
DDX39A-209	ENST00000589318	C6orf223	Q8N319	242 aa		10.21	□□□□□ -0.78
DDX39A-209	ENST00000589318	TENM2	Q9NT68	2774 aa		10.2	□□□□□ -0.78
DDX39A-209	ENST00000589318	NUPR2	A6NF83	97 aa		10.19	□□□□□ -0.78
DDX39A-209	ENST00000589318	IGKV2D-24	A0A075B6R9	120 aa		10.19	□□□□□ -0.78
DDX39A-209	ENST00000589318	FP248	Q71RG6	208 aa	Predicted RBP	10.19	□□□□□ -0.78
DDX39A-209	ENST00000589318	C15orf56	Q8N910	161 aa		10.19	□□□□□ -0.78
DDX39A-209	ENST00000589318	ERC2-IT1	O76042	136 aa		10.18	□□□□□ -0.78
DDX39A-209	ENST00000589318	C10orf25	Q5T742	122 aa		10.18	□□□□□ -0.78
DDX39A-209	ENST00000589318	RBM3	P98179	157 aa	Known RBP	10.17	□□□□□ -0.78
DDX39A-209	ENST00000589318	UNQ6190/PRO20217	Q6UXQ8	127 aa		10.17	□□□□□ -0.78
DDX39A-209	ENST00000589318		Q6ZQT0	140 aa		10.17	□□□□□ -0.78
DDX39A-209	ENST00000589318	ZNF561-AS1	K7EIQ3	104 aa		10.17	□□□□□ -0.78
DDX39A-209	ENST00000589318	LINC01547	P58512	204 aa	Predicted RBP	10.17	□□□□□ -0.78
DDX39A-209	ENST00000589318	TRBV7-6	A0A0J9YX20	115 aa		10.16	□□□□□ -0.78
DDX39A-209	ENST00000589318		F8WEM9	126 aa		10.16	□□□□□ -0.78
DDX39A-209	ENST00000589318	C9orf116	Q5BN46	136 aa	Predicted RBP	10.16	□□□□□ -0.78
DDX39A-209	ENST00000589318	KRTAP1-5	Q9BYS1	174 aa		10.16	□□□□□ -0.78
DDX39A-209	ENST00000589318	HIGD2B	Q4VC39	106 aa		10.15	□□□□□ -0.79
DDX39A-209	ENST00000589318	COX17	Q14061	63 aa		10.14	□□□□□ -0.79
DDX39A-209	ENST00000589318		V9GYY9	64 aa		10.14	□□□□□ -0.79
DDX39A-209	ENST00000589318	VPS13D	Q5THJ4	4388 aa		10.14	□□□□□ -0.79
DDX39A-209	ENST00000589318	GVQW2	A0A096LPI5	108 aa	Predicted RBP	10.13	□□□□□ -0.79
DDX39A-209	ENST00000589318	CASC10	Q5T4H9	136 aa		10.13	□□□□□ -0.79
DDX39A-209	ENST00000589318	UBE2DNL	Q8IWF7	75 aa		10.13	□□□□□ -0.79
DDX39A-209	ENST00000589318	DNAH10	Q8IVF4	4471 aa		10.12	□□□□□ -0.79
DDX39A-209	ENST00000589318	C1orf195	Q5TG92	126 aa		10.12	□□□□□ -0.79
DDX39A-209	ENST00000589318	C6orf48	Q9UBA6	75 aa		10.12	□□□□□ -0.79
DDX39A-209	ENST00000589318		Q6ZVQ6	151 aa		10.11	□□□□□ -0.79
DDX39A-209	ENST00000589318	RMI2	Q96E14	147 aa		10.11	□□□□□ -0.79
DDX39A-209	ENST00000589318	TRBV7-4	A0A0J9YYF1	115 aa		10.11	□□□□□ -0.79
DDX39A-209	ENST00000589318	LAMTOR3	Q9UHA4	124 aa		10.11	□□□□□ -0.79
DDX39A-209	ENST00000589318	PKIG	Q9Y2B9	76 aa		10.11	□□□□□ -0.79
DDX39A-209	ENST00000589318	LINC00575	Q6W349	94 aa		10.09	□□□□□ -0.79
DDX39A-209	ENST00000589318	MUC7	Q8TAX7	377 aa		10.09	□□□□□ -0.79
DDX39A-209	ENST00000589318	SNURF	Q9Y675	71 aa		10.09	□□□□□ -0.79
DDX39A-209	ENST00000589318	HAMP	P81172	84 aa		10.09	□□□□□ -0.79
DDX39A-209	ENST00000589318	CAMK2N2	Q96S95	79 aa		10.09	□□□□□ -0.79
DDX39A-209	ENST00000589318		Q6ZRU5	148 aa		10.08	□□□□□ -0.8
DDX39A-209	ENST00000589318	TG	P01266	2768 aa		10.07	□□□□□ -0.8
DDX39A-209	ENST00000589318	BRK1	Q8WUW1	75 aa		10.07	□□□□□ -0.8
DDX39A-209	ENST00000589318	SEC61G	P60059	68 aa		10.06	□□□□□ -0.8
DDX39A-209	ENST00000589318		Q8NDZ9	215 aa		10.05	□□□□□ -0.8
DDX39A-209	ENST00000589318	NREP	Q16612	68 aa		10.04	□□□□□ -0.8
DDX39A-209	ENST00000589318	TMEM254	Q8TBM7	123 aa		10.04	□□□□□ -0.8
DDX39A-209	ENST00000589318	SYCN	Q0VAF6	134 aa		10.03	□□□□□ -0.8
DDX39A-209	ENST00000589318	C6orf99	Q4VX62	202 aa		10.03	□□□□□ -0.8
DDX39A-209	ENST00000589318	NBDY	A0A0U1RRE5	68 aa		10.02	□□□□□ -0.81
DDX39A-209	ENST00000589318	LINC00474	Q9P2X8	69 aa		10.02	□□□□□ -0.81
DDX39A-209	ENST00000589318	PRR3	P79522	188 aa	Known RBP	10.01	□□□□□ -0.81
DDX39A-209	ENST00000589318	XAGE1A	Q9HD64	81 aa		9.99	□□□□□ -0.81
DDX39A-209	ENST00000589318	BPY2	O14599	106 aa		9.99	□□□□□ -0.81
DDX39A-209	ENST00000589318	PRY	O14603	147 aa		9.98	□□□□□ -0.81
DDX39A-209	ENST00000589318		Q6ZRP5	223 aa		9.98	□□□□□ -0.81
DDX39A-209	ENST00000589318	KMT2A	Q03164	3969 aa		9.98	□□□□□ -0.81
DDX39A-209	ENST00000589318	FUS	P35637	526 aa	Known RBP eCLIP	9.97	□□□□□ -0.81
DDX39A-209	ENST00000589318	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	9.97	□□□□□ -0.81
DDX39A-209	ENST00000589318		Q6ZRN7	208 aa	Predicted RBP	9.97	□□□□□ -0.81
DDX39A-209	ENST00000589318		A0A0U1RQV1	116 aa		9.96	□□□□□ -0.81
DDX39A-209	ENST00000589318	PRR15	Q8IV56	129 aa		9.96	□□□□□ -0.81
DDX39A-209	ENST00000589318	TLX1NB	P0CAT3	122 aa		9.95	□□□□□ -0.82
DDX39A-209	ENST00000589318	PSCA	O43653	123 aa		9.95	□□□□□ -0.82
DDX39A-209	ENST00000589318	WWC2-AS2	Q96NR7	200 aa		9.95	□□□□□ -0.82
DDX39A-209	ENST00000589318	IGLV6-57	P01721	117 aa		9.94	□□□□□ -0.82
DDX39A-209	ENST00000589318		M0R2N4	97 aa		9.93	□□□□□ -0.82
DDX39A-209	ENST00000589318	VPREB1	P12018	145 aa		9.93	□□□□□ -0.82
DDX39A-209	ENST00000589318	DNAH2	Q9P225	4427 aa		9.93	□□□□□ -0.82
DDX39A-209	ENST00000589318	LRCOL1	A6NCL2	159 aa		9.92	□□□□□ -0.82
DDX39A-209	ENST00000589318		Q6ZQY7	126 aa		9.92	□□□□□ -0.82
DDX39A-209	ENST00000589318		Q6ZR54	194 aa		9.92	□□□□□ -0.82
DDX39A-209	ENST00000589318	OCR1	Q9BZK8	76 aa		9.92	□□□□□ -0.82
DDX39A-209	ENST00000589318	DNAH6	Q9C0G6	4158 aa		9.91	□□□□□ -0.82
DDX39A-209	ENST00000589318	COX7B	P24311	80 aa		9.91	□□□□□ -0.82
DDX39A-209	ENST00000589318	CNBP	P62633	177 aa	Known RBP	9.9	□□□□□ -0.82
DDX39A-209	ENST00000589318	MPLKIP	Q8TAP9	179 aa		9.9	□□□□□ -0.82
DDX39A-209	ENST00000589318		Q1T7F1	81 aa		9.89	□□□□□ -0.83
DDX39A-209	ENST00000589318	FAM229B	Q4G0N7	80 aa		9.89	□□□□□ -0.83
DDX39A-209	ENST00000589318	DIRC1	Q969H9	104 aa		9.89	□□□□□ -0.83
DDX39A-209	ENST00000589318	ALMS1	Q8TCU4	4167 aa		9.88	□□□□□ -0.83
DDX39A-209	ENST00000589318	C14orf177	Q52M58	125 aa		9.88	□□□□□ -0.83
DDX39A-209	ENST00000589318	PMAIP1	Q13794	54 aa		9.87	□□□□□ -0.83
DDX39A-209	ENST00000589318	SERTAD4-AS1	Q5TG53	156 aa		9.86	□□□□□ -0.83
DDX39A-209	ENST00000589318	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	9.86	□□□□□ -0.83
DDX39A-209	ENST00000589318		A0A1B0GW54	56 aa		9.86	□□□□□ -0.83
DDX39A-209	ENST00000589318	IGKV4-1	P06312	121 aa		9.86	□□□□□ -0.83
DDX39A-209	ENST00000589318	LINC00476	Q8WZB0	136 aa		9.85	□□□□□ -0.83
DDX39A-209	ENST00000589318	PLA2G2D	Q9UNK4	145 aa		9.85	□□□□□ -0.83
DDX39A-209	ENST00000589318	hDV103S1	A0JD37	113 aa		9.84	□□□□□ -0.83
DDX39A-209	ENST00000589318		M0R378	163 aa		9.84	□□□□□ -0.83
DDX39A-209	ENST00000589318	LY6G6C	O95867	125 aa		9.84	□□□□□ -0.83
DDX39A-209	ENST00000589318	KRTAP7-1	Q8IUC3	87 aa		9.84	□□□□□ -0.83

Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms