RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 C6orf223Q8N319 242 aa2.16□□□□□ -2.06
ZNF540-207ENST00000589285 UBE2D4Q9Y2X8 147 aa2.16□□□□□ -2.06
ZNF540-207ENST00000589285 IGKV2D-26A0A0A0MRZ7 120 aa2.16□□□□□ -2.06
ZNF540-207ENST00000589285 CRYGAP11844 174 aa2.16□□□□□ -2.06
ZNF540-207ENST00000589285 PCP2Q8IVA1 136 aa2.16□□□□□ -2.06
ZNF540-207ENST00000589285 CEND1Q8N111 149 aa2.16□□□□□ -2.06
ZNF540-207ENST00000589285 C15orf53Q8NAA6 179 aa2.16□□□□□ -2.06
ZNF540-207ENST00000589285 TMEM141Q96I45 108 aa2.16□□□□□ -2.06
ZNF540-207ENST00000589285 IGKV2-24A0A0C4DH68 120 aa2.15□□□□□ -2.06
ZNF540-207ENST00000589285 TRBV10-1A0A0K0K1A3 114 aa2.15□□□□□ -2.06
ZNF540-207ENST00000589285 PPP1R17O96001 155 aa2.15□□□□□ -2.07
ZNF540-207ENST00000589285 SCGB1C2P0DMR2 95 aa2.15□□□□□ -2.07
ZNF540-207ENST00000589285 SCGB1D4Q6XE38 83 aa2.15□□□□□ -2.07
ZNF540-207ENST00000589285 CHCHD10Q8WYQ3 142 aaPredicted RBP2.15□□□□□ -2.07
ZNF540-207ENST00000589285 NHP2Q9NX24 153 aaKnown RBP2.15□□□□□ -2.07
ZNF540-207ENST00000589285 FRAS1Q86XX4 4008 aa2.15□□□□□ -2.07
ZNF540-207ENST00000589285 hADV29S1A0JD25 119 aa2.15□□□□□ -2.07
ZNF540-207ENST00000589285 IGIPA6NJ69 53 aa2.15□□□□□ -2.07
ZNF540-207ENST00000589285 COX7CP15954 63 aa2.15□□□□□ -2.07
ZNF540-207ENST00000589285 TOMM6Q96B49 74 aa2.15□□□□□ -2.07
ZNF540-207ENST00000589285 CDC42SE2Q9NRR3 84 aa2.15□□□□□ -2.07
ZNF540-207ENST00000589285 APLNQ9ULZ1 77 aa2.15□□□□□ -2.07
ZNF540-207ENST00000589285 HYDINQ4G0P3 5121 aa2.14□□□□□ -2.07
ZNF540-207ENST00000589285 TRBV6-5A0A0K0K1A5 114 aa2.14□□□□□ -2.07
ZNF540-207ENST00000589285 LINC00959A0A1B0GUT2 108 aa2.14□□□□□ -2.07
ZNF540-207ENST00000589285 NUPR2A6NF83 97 aa2.14□□□□□ -2.07
ZNF540-207ENST00000589285 H7C2G1 150 aa2.14□□□□□ -2.07
ZNF540-207ENST00000589285 IGKCP01834 107 aa2.14□□□□□ -2.07
ZNF540-207ENST00000589285 LINC00242Q5T6M2 205 aa2.14□□□□□ -2.07
ZNF540-207ENST00000589285 LELP1Q5T871 98 aa2.14□□□□□ -2.07
ZNF540-207ENST00000589285 ENHOQ6UWT2 76 aa2.14□□□□□ -2.07
ZNF540-207ENST00000589285 FAM104AQ969W3 186 aa2.14□□□□□ -2.07
ZNF540-207ENST00000589285 XAGE1AQ9HD64 81 aa2.14□□□□□ -2.07
ZNF540-207ENST00000589285 DNAH1Q9P2D7 4330 aa2.14□□□□□ -2.07
ZNF540-207ENST00000589285 TRAV8-4A0A0B4J246 113 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 F8VRH5 84 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 TCL1BO95988 128 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 TSPEAR-AS2P59090 65 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 HERVK_113P61574 105 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 SS18Q15532 418 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 TIMM21Q9BVV7 248 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 ALMS1Q8TCU4 4167 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 IGLV4-69A0A075B6H9 119 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 SMIM26A0A096LP01 95 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 ZNF815PA8K554 130 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 H3BT86 120 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 CHTF8P0CG12 524 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 ZNF22P17026 224 aaPredicted RBP2.13□□□□□ -2.07
ZNF540-207ENST00000589285 PSMB2P49721 201 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 PRR3P79522 188 aaKnown RBP2.13□□□□□ -2.07
ZNF540-207ENST00000589285 UNQ6190/PRO20217Q6UXQ8 127 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 LINC01600Q96MT4 127 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 IMUPQ9GZP8 106 aa2.13□□□□□ -2.07
ZNF540-207ENST00000589285 TRBV7-7A0A0K0K1E9 115 aa2.12□□□□□ -2.07
ZNF540-207ENST00000589285 LGALS3P17931 250 aaKnown RBP2.12□□□□□ -2.07
ZNF540-207ENST00000589285 LINC00158P58513 81 aa2.12□□□□□ -2.07
ZNF540-207ENST00000589285 RBM12B-AS1Q9P1G2 102 aa2.12□□□□□ -2.07
ZNF540-207ENST00000589285 LAMTOR3Q9UHA4 124 aa2.12□□□□□ -2.07
ZNF540-207ENST00000589285 LOC107984156A0A0G2JMH3 177 aa2.12□□□□□ -2.07
ZNF540-207ENST00000589285 NBDYA0A0U1RRE5 68 aa2.12□□□□□ -2.07
ZNF540-207ENST00000589285 LINC01546A6NGU7 62 aa2.12□□□□□ -2.07
ZNF540-207ENST00000589285 COX7A2LO14548 114 aa2.12□□□□□ -2.07
ZNF540-207ENST00000589285 UBE2D1P51668 147 aa2.12□□□□□ -2.07
ZNF540-207ENST00000589285 RPL18AQ02543 176 aaKnown RBP2.12□□□□□ -2.07
ZNF540-207ENST00000589285 SPAG11BQ08648 103 aa2.12□□□□□ -2.07
ZNF540-207ENST00000589285 ARL17AQ8IVW1 177 aa2.12□□□□□ -2.07
ZNF540-207ENST00000589285 CAMK2N2Q96S95 79 aa2.12□□□□□ -2.07
ZNF540-207ENST00000589285 Q6ZRU5 148 aa2.11□□□□□ -2.07
ZNF540-207ENST00000589285 TIMM17AQ99595 171 aa2.11□□□□□ -2.07
ZNF540-207ENST00000589285 NDUFA12Q9UI09 145 aa2.11□□□□□ -2.07
ZNF540-207ENST00000589285 SERP1Q9Y6X1 66 aa2.11□□□□□ -2.07
ZNF540-207ENST00000589285 MYMXA0A1B0GTQ4 84 aa2.11□□□□□ -2.07
ZNF540-207ENST00000589285 ATOX1O00244 68 aa2.11□□□□□ -2.07
ZNF540-207ENST00000589285 IGHV3OR16-9A0A0B4J2B5 98 aa2.11□□□□□ -2.07
ZNF540-207ENST00000589285 PRR15Q8IV56 129 aa2.11□□□□□ -2.07
ZNF540-207ENST00000589285 COPS9Q8WXC6 57 aa2.11□□□□□ -2.07
ZNF540-207ENST00000589285 DMBT1Q9UGM3 2413 aaPredicted RBP2.1□□□□□ -2.07
ZNF540-207ENST00000589285 RYR3Q15413 4870 aa2.1□□□□□ -2.07
ZNF540-207ENST00000589285 LINC01556Q5JQF7 62 aa2.1□□□□□ -2.07
ZNF540-207ENST00000589285 C1orf134Q5TEV5 83 aa2.1□□□□□ -2.07
ZNF540-207ENST00000589285 AMELXQ99217 191 aa2.1□□□□□ -2.07
ZNF540-207ENST00000589285 HIST1H4GQ99525 98 aa2.1□□□□□ -2.07
ZNF540-207ENST00000589285 FAM168BA1KXE4 195 aa2.1□□□□□ -2.07
ZNF540-207ENST00000589285 NDUFC2-KCTD14E9PQ53 114 aa2.1□□□□□ -2.07
ZNF540-207ENST00000589285 SMR3BP02814 79 aaPredicted RBP2.1□□□□□ -2.07
ZNF540-207ENST00000589285 PLNP26678 52 aa2.1□□□□□ -2.07
ZNF540-207ENST00000589285 MIAQ16674 131 aa2.1□□□□□ -2.07
ZNF540-207ENST00000589285 COX7B2Q8TF08 81 aa2.1□□□□□ -2.07
ZNF540-207ENST00000589285 KRTAP4-4Q9BYR3 166 aa2.1□□□□□ -2.07
ZNF540-207ENST00000589285 IGKV2-28A0A075B6P5 120 aa2.09□□□□□ -2.07
ZNF540-207ENST00000589285 LINC01549A6NIU2 74 aa2.09□□□□□ -2.07
ZNF540-207ENST00000589285 C8orf87E5RJ46 101 aa2.09□□□□□ -2.07
ZNF540-207ENST00000589285 SLC25A20O43772 301 aa2.09□□□□□ -2.07
ZNF540-207ENST00000589285 IGKV2D-28P01615 120 aa2.09□□□□□ -2.07
ZNF540-207ENST00000589285 KRTAP12-2P59991 146 aa2.09□□□□□ -2.07
ZNF540-207ENST00000589285 MRPS36P82909 103 aaKnown RBP2.09□□□□□ -2.07
ZNF540-207ENST00000589285 MIR7-3HGQ8N6C7 128 aa2.09□□□□□ -2.07
ZNF540-207ENST00000589285 CYSTM1Q9H1C7 97 aa2.09□□□□□ -2.07
ZNF540-207ENST00000589285 PRR34Q9NV39 138 aa2.09□□□□□ -2.07
ZNF540-207ENST00000589285 VPS13DQ5THJ4 4388 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms