RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 HELZ2Q9BYK8 2649 aaKnown RBP8.02□□□□□ -1.13
SHMT1-208ENST00000582352 ATRQ13535 2644 aa8.01□□□□□ -1.13
SHMT1-208ENST00000582352 SYCNQ0VAF6 134 aa8.01□□□□□ -1.13
SHMT1-208ENST00000582352 Q6ZTC4 211 aa8.01□□□□□ -1.13
SHMT1-208ENST00000582352 RETNQ9HD89 108 aa8.01□□□□□ -1.13
SHMT1-208ENST00000582352 J3QKU1 62 aa8.01□□□□□ -1.13
SHMT1-208ENST00000582352 ERC2-IT1O76042 136 aa8.01□□□□□ -1.13
SHMT1-208ENST00000582352 F8WDY8 70 aa8□□□□□ -1.13
SHMT1-208ENST00000582352 KCNQ1DNQ9H478 68 aa8□□□□□ -1.13
SHMT1-208ENST00000582352 NSD1Q96L73 2696 aaPredicted RBP8□□□□□ -1.13
SHMT1-208ENST00000582352 ESRGQ1W209 222 aa7.99□□□□□ -1.13
SHMT1-208ENST00000582352 SMIM26A0A096LP01 95 aa7.99□□□□□ -1.13
SHMT1-208ENST00000582352 TRRAPQ9Y4A5 3859 aa7.98□□□□□ -1.13
SHMT1-208ENST00000582352 SERTAD4-AS1Q5TG53 156 aa7.98□□□□□ -1.13
SHMT1-208ENST00000582352 C7orf33Q8WU49 177 aa7.98□□□□□ -1.13
SHMT1-208ENST00000582352 TEP1Q99973 2627 aaKnown RBP7.98□□□□□ -1.13
SHMT1-208ENST00000582352 FUSP35637 526 aaKnown RBP eCLIP7.98□□□□□ -1.13
SHMT1-208ENST00000582352 LINC01556Q5JQF7 62 aa7.98□□□□□ -1.13
SHMT1-208ENST00000582352 Q8N377 158 aa7.98□□□□□ -1.13
SHMT1-208ENST00000582352 OCR1Q9BZK8 76 aa7.97□□□□□ -1.13
SHMT1-208ENST00000582352 IGLV5-48A0A075B6I7 105 aa7.96□□□□□ -1.13
SHMT1-208ENST00000582352 DHRS4-AS1Q9P1J3 65 aa7.96□□□□□ -1.13
SHMT1-208ENST00000582352 PRYO14603 147 aa7.96□□□□□ -1.14
SHMT1-208ENST00000582352 Q6ZRX8 168 aa7.95□□□□□ -1.14
SHMT1-208ENST00000582352 FP248Q71RG6 208 aaPredicted RBP7.94□□□□□ -1.14
SHMT1-208ENST00000582352 OTOGQ6ZRI0 2925 aa7.94□□□□□ -1.14
SHMT1-208ENST00000582352 PKD1L1Q8TDX9 2849 aa7.94□□□□□ -1.14
SHMT1-208ENST00000582352 A0A0U1RQV1 116 aa7.93□□□□□ -1.14
SHMT1-208ENST00000582352 RPL37AP8A6NKH3 93 aa7.93□□□□□ -1.14
SHMT1-208ENST00000582352 ETDCA0A1B0GVM5 59 aa7.93□□□□□ -1.14
SHMT1-208ENST00000582352 DEFB131BA0A096LNP1 70 aa7.93□□□□□ -1.14
SHMT1-208ENST00000582352 A0A1B0GW54 56 aa7.93□□□□□ -1.14
SHMT1-208ENST00000582352 OXLD1Q5BKU9 147 aa7.92□□□□□ -1.14
SHMT1-208ENST00000582352 HECTD1Q9ULT8 2610 aa7.92□□□□□ -1.14
SHMT1-208ENST00000582352 C1orf137Q5JT78 98 aa7.92□□□□□ -1.14
SHMT1-208ENST00000582352 Q9BRP9 147 aa7.92□□□□□ -1.14
SHMT1-208ENST00000582352 TLX1NBP0CAT3 122 aa7.91□□□□□ -1.14
SHMT1-208ENST00000582352 MRAPQ8TCY5 172 aa7.91□□□□□ -1.14
SHMT1-208ENST00000582352 SMIM29Q86T20 159 aa7.91□□□□□ -1.14
SHMT1-208ENST00000582352 PLA2G2DQ9UNK4 145 aa7.91□□□□□ -1.14
SHMT1-208ENST00000582352 A0A1W2PNM2 257 aa7.9□□□□□ -1.14
SHMT1-208ENST00000582352 LINC00474Q9P2X8 69 aa7.9□□□□□ -1.14
SHMT1-208ENST00000582352 FAM168BA1KXE4 195 aa7.9□□□□□ -1.15
SHMT1-208ENST00000582352 LINC00336Q6ZUF6 198 aa7.9□□□□□ -1.15
SHMT1-208ENST00000582352 HIGD2AQ9BW72 106 aa7.9□□□□□ -1.15
SHMT1-208ENST00000582352 IGLV1-50A0A075B6I6 118 aa7.89□□□□□ -1.15
SHMT1-208ENST00000582352 DNAH10OSP0CZ25 163 aa7.89□□□□□ -1.15
SHMT1-208ENST00000582352 Q8NBF4 154 aa7.89□□□□□ -1.15
SHMT1-208ENST00000582352 C11orf45Q8TAV5 145 aa7.89□□□□□ -1.15
SHMT1-208ENST00000582352 KRTAP4-16G5E9R7 235 aaPredicted RBP7.89□□□□□ -1.15
SHMT1-208ENST00000582352 KRTAP10-11P60412 298 aa7.89□□□□□ -1.15
SHMT1-208ENST00000582352 ST20-AS1Q8NBB2 130 aa7.89□□□□□ -1.15
SHMT1-208ENST00000582352 FAM30AQ9NZY2 134 aa7.89□□□□□ -1.15
SHMT1-208ENST00000582352 TNP2Q05952 138 aa7.88□□□□□ -1.15
SHMT1-208ENST00000582352 PRO0628Q9UI54 55 aa7.88□□□□□ -1.15
SHMT1-208ENST00000582352 IGLV5-37A0A075B6J1 123 aa7.88□□□□□ -1.15
SHMT1-208ENST00000582352 SPRR1AP35321 89 aa7.88□□□□□ -1.15
SHMT1-208ENST00000582352 TENM3Q9P273 2699 aa7.87□□□□□ -1.15
SHMT1-208ENST00000582352 UBE2BP63146 152 aa7.86□□□□□ -1.15
SHMT1-208ENST00000582352 MRPL55Q7Z7F7 128 aaKnown RBP7.85□□□□□ -1.15
SHMT1-208ENST00000582352 SPRR4Q96PI1 79 aa7.85□□□□□ -1.15
SHMT1-208ENST00000582352 FAM229BQ4G0N7 80 aa7.85□□□□□ -1.15
SHMT1-208ENST00000582352 CASC10Q5T4H9 136 aa7.83□□□□□ -1.16
SHMT1-208ENST00000582352 MPLKIPQ8TAP9 179 aa7.83□□□□□ -1.16
SHMT1-208ENST00000582352 K7EQZ3 153 aa7.82□□□□□ -1.16
SHMT1-208ENST00000582352 KRTAP7-1Q8IUC3 87 aa7.82□□□□□ -1.16
SHMT1-208ENST00000582352 LCE6AA0A183 80 aa7.82□□□□□ -1.16
SHMT1-208ENST00000582352 DSCR10P59022 87 aa7.82□□□□□ -1.16
SHMT1-208ENST00000582352 LINC00588Q9Y4M8 146 aa7.81□□□□□ -1.16
SHMT1-208ENST00000582352 ANK2Q01484 3957 aa7.81□□□□□ -1.16
SHMT1-208ENST00000582352 REG3GQ6UW15 175 aa7.81□□□□□ -1.16
SHMT1-208ENST00000582352 LINC00476Q8WZB0 136 aa7.8□□□□□ -1.16
SHMT1-208ENST00000582352 KMT2BQ9UMN6 2715 aaPredicted RBP7.79□□□□□ -1.16
SHMT1-208ENST00000582352 BRK1Q8WUW1 75 aa7.79□□□□□ -1.16
SHMT1-208ENST00000582352 HCG22E2RYF7 251 aa7.78□□□□□ -1.16
SHMT1-208ENST00000582352 PSCAO43653 123 aa7.77□□□□□ -1.17
SHMT1-208ENST00000582352 ZCCHC13Q8WW36 166 aaKnown RBP7.76□□□□□ -1.17
SHMT1-208ENST00000582352 hDV103S1A0JD37 113 aa7.75□□□□□ -1.17
SHMT1-208ENST00000582352 IGFL1Q6UW32 110 aa7.75□□□□□ -1.17
SHMT1-208ENST00000582352 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.75□□□□□ -1.17
SHMT1-208ENST00000582352 FLNBO75369 2602 aaKnown RBP7.75□□□□□ -1.17
SHMT1-208ENST00000582352 A0A0G2JQZ4 141 aa7.74□□□□□ -1.17
SHMT1-208ENST00000582352 A0A1W2PNN7 141 aa7.74□□□□□ -1.17
SHMT1-208ENST00000582352 BAHCC1Q9P281 2608 aa7.74□□□□□ -1.17
SHMT1-208ENST00000582352 PRLHP81277 87 aa7.73□□□□□ -1.17
SHMT1-208ENST00000582352 F8P00451 2351 aa7.73□□□□□ -1.17
SHMT1-208ENST00000582352 DEFB116Q30KQ4 102 aa7.72□□□□□ -1.17
SHMT1-208ENST00000582352 C1orf64Q8NEQ6 169 aa7.72□□□□□ -1.17
SHMT1-208ENST00000582352 A0A087WSZ3 146 aa7.72□□□□□ -1.17
SHMT1-208ENST00000582352 WFDC13Q8IUB5 93 aa7.71□□□□□ -1.17
SHMT1-208ENST00000582352 IGKV2-24A0A0C4DH68 120 aa7.71□□□□□ -1.18
SHMT1-208ENST00000582352 PKIGQ9Y2B9 76 aa7.71□□□□□ -1.18
SHMT1-208ENST00000582352 A0A096LNI7 61 aa7.7□□□□□ -1.18
SHMT1-208ENST00000582352 LRCOL1A6NCL2 159 aa7.7□□□□□ -1.18
SHMT1-208ENST00000582352 NDUFB1O75438 58 aa7.7□□□□□ -1.18
SHMT1-208ENST00000582352 STAB1Q9NY15 2570 aa7.69□□□□□ -1.18
SHMT1-208ENST00000582352 MP68P56378 58 aa7.69□□□□□ -1.18
SHMT1-208ENST00000582352 MAST4O15021 2626 aa7.69□□□□□ -1.18
SHMT1-208ENST00000582352 IGLV8-61A0A075B6I0 122 aa7.69□□□□□ -1.18
SHMT1-208ENST00000582352 C16orf90A8MZG2 172 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms