RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 IGLV5-37A0A075B6J1 123 aa6.73□□□□□ -1.33
SS18-217ENST00000580958 TRAV23DV6A0A075B6W5 121 aa6.73□□□□□ -1.33
SS18-217ENST00000580958 C16orf90A8MZG2 172 aa6.73□□□□□ -1.33
SS18-217ENST00000580958 F8W1H4 67 aa6.73□□□□□ -1.33
SS18-217ENST00000580958 H0YGX0 51 aa6.73□□□□□ -1.33
SS18-217ENST00000580958 C6orf99Q4VX62 202 aa6.73□□□□□ -1.33
SS18-217ENST00000580958 FAM19A5Q7Z5A7 132 aaPredicted RBP6.73□□□□□ -1.33
SS18-217ENST00000580958 C7orf33Q8WU49 177 aa6.73□□□□□ -1.33
SS18-217ENST00000580958 KRTAP7-1Q8IUC3 87 aa6.72□□□□□ -1.33
SS18-217ENST00000580958 FAT2Q9NYQ8 4349 aa6.72□□□□□ -1.33
SS18-217ENST00000580958 A0A087WYN8 130 aa6.71□□□□□ -1.34
SS18-217ENST00000580958 SLC25A20O43772 301 aa6.71□□□□□ -1.34
SS18-217ENST00000580958 TRACP01848 142 aa6.71□□□□□ -1.34
SS18-217ENST00000580958 CHTF8P0CG12 524 aa6.71□□□□□ -1.34
SS18-217ENST00000580958 FUSP35637 526 aaKnown RBP eCLIP6.71□□□□□ -1.34
SS18-217ENST00000580958 PKIGQ9Y2B9 76 aa6.71□□□□□ -1.34
SS18-217ENST00000580958 C22orf24Q9Y442 160 aa6.71□□□□□ -1.34
SS18-217ENST00000580958 DIRC1Q969H9 104 aa6.7□□□□□ -1.34
SS18-217ENST00000580958 A0A1W2PNN7 141 aa6.69□□□□□ -1.34
SS18-217ENST00000580958 RTL8CO15255 209 aa6.69□□□□□ -1.34
SS18-217ENST00000580958 ZNF73O43830 326 aaPredicted RBP6.69□□□□□ -1.34
SS18-217ENST00000580958 SDIM1Q6ZPB5 146 aa6.69□□□□□ -1.34
SS18-217ENST00000580958 LINC00167Q96N53 147 aa6.69□□□□□ -1.34
SS18-217ENST00000580958 CBY1Q9Y3M2 126 aa6.69□□□□□ -1.34
SS18-217ENST00000580958 PKD1P98161 4303 aa6.69□□□□□ -1.34
SS18-217ENST00000580958 RPL37AP8A6NKH3 93 aa6.68□□□□□ -1.34
SS18-217ENST00000580958 ETDBQ3ZM63 59 aa6.68□□□□□ -1.34
SS18-217ENST00000580958 MRPL55Q7Z7F7 128 aaKnown RBP6.68□□□□□ -1.34
SS18-217ENST00000580958 ANKRD29Q8N6D5 301 aa6.68□□□□□ -1.34
SS18-217ENST00000580958 H3BT86 120 aa6.67□□□□□ -1.34
SS18-217ENST00000580958 M0QXV9 152 aa6.67□□□□□ -1.34
SS18-217ENST00000580958 PRYO14603 147 aa6.67□□□□□ -1.34
SS18-217ENST00000580958 COX7BP24311 80 aa6.67□□□□□ -1.34
SS18-217ENST00000580958 KCNQ1DNQ9H478 68 aa6.67□□□□□ -1.34
SS18-217ENST00000580958 IGLV1-50A0A075B6I6 118 aa6.66□□□□□ -1.34
SS18-217ENST00000580958 IGLV5-52A0A0A0MRZ9 124 aa6.66□□□□□ -1.34
SS18-217ENST00000580958 TRBV7-6A0A0J9YX20 115 aa6.66□□□□□ -1.34
SS18-217ENST00000580958 A0A1B0GX51 115 aa6.66□□□□□ -1.34
SS18-217ENST00000580958 PANO1I0J062 215 aa6.66□□□□□ -1.34
SS18-217ENST00000580958 DNAL4O96015 105 aa6.66□□□□□ -1.34
SS18-217ENST00000580958 LINC00575Q6W349 94 aa6.66□□□□□ -1.34
SS18-217ENST00000580958 LINC01600Q96MT4 127 aa6.66□□□□□ -1.34
SS18-217ENST00000580958 KRTAP4-9Q9BYQ8 210 aa6.66□□□□□ -1.34
SS18-217ENST00000580958 LCE6AA0A183 80 aa6.65□□□□□ -1.34
SS18-217ENST00000580958 BAALC-AS2P0C853 105 aa6.65□□□□□ -1.34
SS18-217ENST00000580958 ELOF1P60002 83 aaKnown RBP6.65□□□□□ -1.34
SS18-217ENST00000580958 LINC00474Q9P2X8 69 aa6.65□□□□□ -1.34
SS18-217ENST00000580958 PHF5AQ7RTV0 110 aaKnown RBP6.64□□□□□ -1.35
SS18-217ENST00000580958 TEN1Q86WV5 123 aa6.64□□□□□ -1.35
SS18-217ENST00000580958 RYR2Q92736 4967 aa6.64□□□□□ -1.35
SS18-217ENST00000580958 hADV29S1A0JD25 119 aa6.63□□□□□ -1.35
SS18-217ENST00000580958 SNCGO76070 127 aa6.63□□□□□ -1.35
SS18-217ENST00000580958 OCIAD2Q56VL3 154 aa6.63□□□□□ -1.35
SS18-217ENST00000580958 SPACA4Q8TDM5 124 aa6.63□□□□□ -1.35
SS18-217ENST00000580958 ETDCA0A1B0GVM5 59 aa6.62□□□□□ -1.35
SS18-217ENST00000580958 SPRR1AP35321 89 aa6.62□□□□□ -1.35
SS18-217ENST00000580958 KRTAP10-2P60368 255 aa6.62□□□□□ -1.35
SS18-217ENST00000580958 PPDPFLQ8WWR9 84 aa6.62□□□□□ -1.35
SS18-217ENST00000580958 DPH3Q96FX2 82 aa6.62□□□□□ -1.35
SS18-217ENST00000580958 ORMDL1Q9P0S3 153 aa6.62□□□□□ -1.35
SS18-217ENST00000580958 KRTAP4-16G5E9R7 235 aaPredicted RBP6.61□□□□□ -1.35
SS18-217ENST00000580958 KRTAP19-4Q3LI73 84 aa6.61□□□□□ -1.35
SS18-217ENST00000580958 REG3GQ6UW15 175 aa6.61□□□□□ -1.35
SS18-217ENST00000580958 B5MCH6 92 aa6.6□□□□□ -1.35
SS18-217ENST00000580958 UBE2BP63146 152 aa6.6□□□□□ -1.35
SS18-217ENST00000580958 KRTAP11-1Q8IUC1 163 aa6.6□□□□□ -1.35
SS18-217ENST00000580958 TEX49A0A1B0GTD5 131 aa6.59□□□□□ -1.35
SS18-217ENST00000580958 K7ERU9 68 aa6.59□□□□□ -1.35
SS18-217ENST00000580958 Q6ZQY7 126 aa6.59□□□□□ -1.35
SS18-217ENST00000580958 EPM2AB3EWF7 344 aa6.58□□□□□ -1.36
SS18-217ENST00000580958 INAFM2P0DMQ5 153 aa6.58□□□□□ -1.36
SS18-217ENST00000580958 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.58□□□□□ -1.36
SS18-217ENST00000580958 Q6ZRX8 168 aa6.58□□□□□ -1.36
SS18-217ENST00000580958 DYNC1H1Q14204 4646 aaKnown RBP6.57□□□□□ -1.36
SS18-217ENST00000580958 Q9BRP9 147 aa6.57□□□□□ -1.36
SS18-217ENST00000580958 LCE4AQ5TA78 99 aa6.56□□□□□ -1.36
SS18-217ENST00000580958 FAM19A1Q7Z5A9 133 aa6.56□□□□□ -1.36
SS18-217ENST00000580958 PLAC8Q9NZF1 115 aa6.56□□□□□ -1.36
SS18-217ENST00000580958 DHRS4-AS1Q9P1J3 65 aa6.56□□□□□ -1.36
SS18-217ENST00000580958 H3BS24 57 aa6.55□□□□□ -1.36
SS18-217ENST00000580958 J3QR89 54 aa6.55□□□□□ -1.36
SS18-217ENST00000580958 TMEM256-PLSCR3K7ERE1 68 aa6.55□□□□□ -1.36
SS18-217ENST00000580958 A0A1B0GV72 72 aa6.54□□□□□ -1.36
SS18-217ENST00000580958 KRTAP10-1P60331 282 aa6.54□□□□□ -1.36
SS18-217ENST00000580958 PRLHP81277 87 aa6.54□□□□□ -1.36
SS18-217ENST00000580958 SMCR5Q8TEV8 140 aa6.54□□□□□ -1.36
SS18-217ENST00000580958 LRP1BQ9NZR2 4599 aa6.54□□□□□ -1.36
SS18-217ENST00000580958 KMT2CQ8NEZ4 4911 aaKnown RBP6.53□□□□□ -1.36
SS18-217ENST00000580958 H3BQ85 93 aa6.53□□□□□ -1.36
SS18-217ENST00000580958 ERC2-IT1O76042 136 aa6.53□□□□□ -1.36
SS18-217ENST00000580958 LINC00336Q6ZUF6 198 aa6.53□□□□□ -1.36
SS18-217ENST00000580958 FAM30AQ9NZY2 134 aa6.53□□□□□ -1.36
SS18-217ENST00000580958 OBSCN-AS1Q96MR7 158 aa6.52□□□□□ -1.37
SS18-217ENST00000580958 BCE1O60756 84 aa6.51□□□□□ -1.37
SS18-217ENST00000580958 UBE2AP49459 152 aa6.51□□□□□ -1.37
SS18-217ENST00000580958 LINC01547P58512 204 aaPredicted RBP6.51□□□□□ -1.37
SS18-217ENST00000580958 ST20-AS1Q8NBB2 130 aa6.51□□□□□ -1.37
SS18-217ENST00000580958 DEFB105AQ8NG35 78 aa6.51□□□□□ -1.37
SS18-217ENST00000580958 KRTAP4-2Q9BYR5 136 aa6.51□□□□□ -1.37
SS18-217ENST00000580958 C14orf132Q9NPU4 83 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 246 ms