RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 TRAV23DV6A0A075B6W5 121 aa13.9□□□□□ -0.18
SHMT1-206ENST00000579558 SPANXCQ9NY87 97 aa13.89□□□□□ -0.19
SHMT1-206ENST00000579558 Q6ZRX8 168 aa13.88□□□□□ -0.19
SHMT1-206ENST00000579558 ATOH7Q8N100 152 aa13.88□□□□□ -0.19
SHMT1-206ENST00000579558 PPDPFQ9H3Y8 114 aa13.88□□□□□ -0.19
SHMT1-206ENST00000579558 ANKRD39Q53RE8 183 aa13.87□□□□□ -0.19
SHMT1-206ENST00000579558 Q9BRP9 147 aa13.86□□□□□ -0.19
SHMT1-206ENST00000579558 ERC2-IT1O76042 136 aa13.85□□□□□ -0.19
SHMT1-206ENST00000579558 AKR1D1P51857 326 aa13.85□□□□□ -0.19
SHMT1-206ENST00000579558 ZNF73O43830 326 aaPredicted RBP13.84□□□□□ -0.19
SHMT1-206ENST00000579558 SCGB1D4Q6XE38 83 aa13.84□□□□□ -0.19
SHMT1-206ENST00000579558 CBY1Q9Y3M2 126 aa13.84□□□□□ -0.19
SHMT1-206ENST00000579558 JOSD1Q15040 202 aaPredicted RBP13.83□□□□□ -0.2
SHMT1-206ENST00000579558 GAGE2AQ6NT46 116 aa13.83□□□□□ -0.2
SHMT1-206ENST00000579558 OR13C6PQ8NH95 151 aa13.83□□□□□ -0.2
SHMT1-206ENST00000579558 LINC00483Q53H64 154 aa13.82□□□□□ -0.2
SHMT1-206ENST00000579558 HIST3H2BBQ8N257 126 aa13.82□□□□□ -0.2
SHMT1-206ENST00000579558 S100A2P29034 98 aa13.81□□□□□ -0.2
SHMT1-206ENST00000579558 CTAG1AP78358 180 aa13.81□□□□□ -0.2
SHMT1-206ENST00000579558 SPANXDQ9BXN6 97 aa13.81□□□□□ -0.2
SHMT1-206ENST00000579558 RETNLBQ9BQ08 111 aa13.8□□□□□ -0.2
SHMT1-206ENST00000579558 HINT1P49773 126 aaPredicted RBP13.79□□□□□ -0.2
SHMT1-206ENST00000579558 SPAG11AQ6PDA7 123 aa13.79□□□□□ -0.2
SHMT1-206ENST00000579558 HIST1H2BLQ99880 126 aa13.79□□□□□ -0.2
SHMT1-206ENST00000579558 PCP2Q8IVA1 136 aa13.77□□□□□ -0.21
SHMT1-206ENST00000579558 LINC00518Q8N0U6 118 aa13.77□□□□□ -0.21
SHMT1-206ENST00000579558 Q8NBF4 154 aa13.77□□□□□ -0.21
SHMT1-206ENST00000579558 S100A6P06703 90 aa13.76□□□□□ -0.21
SHMT1-206ENST00000579558 C4orf48Q5BLP8 95 aa13.76□□□□□ -0.21
SHMT1-206ENST00000579558 SNRPEP62304 92 aaKnown RBP13.75□□□□□ -0.21
SHMT1-206ENST00000579558 COPS9Q8WXC6 57 aa13.75□□□□□ -0.21
SHMT1-206ENST00000579558 IGLV9-49A0A0B4J1Y8 123 aa13.73□□□□□ -0.21
SHMT1-206ENST00000579558 IFITM1P13164 125 aa13.73□□□□□ -0.21
SHMT1-206ENST00000579558 MOBPQ13875 183 aa13.72□□□□□ -0.21
SHMT1-206ENST00000579558 Q6ZVH6 145 aa13.72□□□□□ -0.21
SHMT1-206ENST00000579558 ST20-AS1Q8NBB2 130 aa13.7□□□□□ -0.22
SHMT1-206ENST00000579558 HSBP1L1C9JCN9 74 aa13.68□□□□□ -0.22
SHMT1-206ENST00000579558 MUSTN1Q8IVN3 82 aa13.68□□□□□ -0.22
SHMT1-206ENST00000579558 C5orf52A6NGY3 159 aa13.67□□□□□ -0.22
SHMT1-206ENST00000579558 C6orf99Q4VX62 202 aa13.67□□□□□ -0.22
SHMT1-206ENST00000579558 SSBP3-AS1Q7Z2R9 100 aa13.67□□□□□ -0.22
SHMT1-206ENST00000579558 DHRS4-AS1Q9P1J3 65 aa13.67□□□□□ -0.22
SHMT1-206ENST00000579558 IGLV7-46A0A075B6I9 117 aa13.66□□□□□ -0.22
SHMT1-206ENST00000579558 COX7BP24311 80 aa13.66□□□□□ -0.22
SHMT1-206ENST00000579558 SPINK1P00995 79 aa13.65□□□□□ -0.22
SHMT1-206ENST00000579558 ELOF1P60002 83 aaKnown RBP13.65□□□□□ -0.22
SHMT1-206ENST00000579558 A6NDN8 102 aa13.64□□□□□ -0.23
SHMT1-206ENST00000579558 C9orf153Q5TBE3 101 aa13.63□□□□□ -0.23
SHMT1-206ENST00000579558 TPRXLQ17RH7 258 aa13.6□□□□□ -0.23
SHMT1-206ENST00000579558 TRBV7-6A0A0J9YX20 115 aa13.58□□□□□ -0.24
SHMT1-206ENST00000579558 SCGB1D1O95968 90 aa13.58□□□□□ -0.24
SHMT1-206ENST00000579558 SPRR1BP22528 89 aa13.58□□□□□ -0.24
SHMT1-206ENST00000579558 FP248Q71RG6 208 aaPredicted RBP13.58□□□□□ -0.24
SHMT1-206ENST00000579558 TRAV13-2A0A0B4J235 113 aa13.57□□□□□ -0.24
SHMT1-206ENST00000579558 CDIP1Q9H305 208 aa13.57□□□□□ -0.24
SHMT1-206ENST00000579558 A0A1B0GWB2 263 aa13.56□□□□□ -0.24
SHMT1-206ENST00000579558 SLC25A34Q6PIV7 304 aa13.56□□□□□ -0.24
SHMT1-206ENST00000579558 MUC2Q02817 5179 aa13.55□□□□□ -0.24
SHMT1-206ENST00000579558 RPS29P62273 56 aaKnown RBP13.55□□□□□ -0.24
SHMT1-206ENST00000579558 TAL2Q16559 108 aa13.53□□□□□ -0.24
SHMT1-206ENST00000579558 LAMTOR3Q9UHA4 124 aa13.52□□□□□ -0.25
SHMT1-206ENST00000579558 Q8N377 158 aa13.51□□□□□ -0.25
SHMT1-206ENST00000579558 DEFB105AQ8NG35 78 aa13.51□□□□□ -0.25
SHMT1-206ENST00000579558 SMIM11BQ8TCY0 68 aa13.51□□□□□ -0.25
SHMT1-206ENST00000579558 A4D1N5 150 aa13.48□□□□□ -0.25
SHMT1-206ENST00000579558 SLC25A20O43772 301 aa13.48□□□□□ -0.25
SHMT1-206ENST00000579558 TEX49A0A1B0GTD5 131 aa13.47□□□□□ -0.25
SHMT1-206ENST00000579558 COX8AP10176 69 aa13.46□□□□□ -0.25
SHMT1-206ENST00000579558 Q1RN00 199 aa13.46□□□□□ -0.25
SHMT1-206ENST00000579558 HIST1H4GQ99525 98 aa13.44□□□□□ -0.26
SHMT1-206ENST00000579558 NHP2Q9NX24 153 aaKnown RBP13.44□□□□□ -0.26
SHMT1-206ENST00000579558 KRTAP13-3Q3SY46 172 aa13.43□□□□□ -0.26
SHMT1-206ENST00000579558 IGLV5-48A0A075B6I7 105 aa13.41□□□□□ -0.26
SHMT1-206ENST00000579558 LINC01547P58512 204 aaPredicted RBP13.41□□□□□ -0.26
SHMT1-206ENST00000579558 VAMP3Q15836 100 aa13.41□□□□□ -0.26
SHMT1-206ENST00000579558 HRCT1Q6UXD1 115 aa13.41□□□□□ -0.26
SHMT1-206ENST00000579558 DLEU1O43261 78 aa13.4□□□□□ -0.26
SHMT1-206ENST00000579558 SMIM29Q86T20 159 aa13.39□□□□□ -0.27
SHMT1-206ENST00000579558 C12orf57Q99622 126 aa13.39□□□□□ -0.27
SHMT1-206ENST00000579558 PRO1933Q9H354 126 aa13.38□□□□□ -0.27
SHMT1-206ENST00000579558 PAM16Q9Y3D7 125 aa13.38□□□□□ -0.27
SHMT1-206ENST00000579558 C14orf144Q96I85 54 aa13.37□□□□□ -0.27
SHMT1-206ENST00000579558 LIMD2Q9BT23 127 aa13.37□□□□□ -0.27
SHMT1-206ENST00000579558 SPATA45Q537H7 98 aa13.36□□□□□ -0.27
SHMT1-206ENST00000579558 LINC00575Q6W349 94 aa13.34□□□□□ -0.27
SHMT1-206ENST00000579558 VAMP8Q9BV40 100 aa13.34□□□□□ -0.27
SHMT1-206ENST00000579558 MUC17Q685J3 4493 aa13.34□□□□□ -0.27
SHMT1-206ENST00000579558 A0A0U1RQV1 116 aa13.32□□□□□ -0.28
SHMT1-206ENST00000579558 CD164Q04900 197 aa13.32□□□□□ -0.28
SHMT1-206ENST00000579558 H7C2G1 150 aa13.31□□□□□ -0.28
SHMT1-206ENST00000579558 hADV29S1A0JD25 119 aa13.3□□□□□ -0.28
SHMT1-206ENST00000579558 HIGD1BQ9P298 99 aa13.3□□□□□ -0.28
SHMT1-206ENST00000579558 Q6ZQY7 126 aa13.28□□□□□ -0.28
SHMT1-206ENST00000579558 BVES-AS1Q5T3Y7 98 aa13.27□□□□□ -0.29
SHMT1-206ENST00000579558 A0A0G2JQZ4 141 aa13.26□□□□□ -0.29
SHMT1-206ENST00000579558 F8WEM9 126 aa13.25□□□□□ -0.29
SHMT1-206ENST00000579558 CFC1BP0CG36 223 aa13.25□□□□□ -0.29
SHMT1-206ENST00000579558 CFC1P0CG37 223 aa13.25□□□□□ -0.29
SHMT1-206ENST00000579558 C2orf91Q6ZV80 131 aa13.25□□□□□ -0.29
SHMT1-206ENST00000579558 RAB37Q96AX2 223 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms