RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 NPC2P61916 151 aa7.73□□□□□ -1.17
CCDC40-216ENST00000576241 RPS29P62273 56 aaKnown RBP7.73□□□□□ -1.17
CCDC40-216ENST00000576241 KRTAP13-3Q3SY46 172 aa7.73□□□□□ -1.17
CCDC40-216ENST00000576241 CBY1Q9Y3M2 126 aa7.73□□□□□ -1.17
CCDC40-216ENST00000576241 A0A0J9YXY3 114 aa7.71□□□□□ -1.18
CCDC40-216ENST00000576241 E9PLD3 99 aa7.71□□□□□ -1.18
CCDC40-216ENST00000576241 ZNF73O43830 326 aaPredicted RBP7.71□□□□□ -1.18
CCDC40-216ENST00000576241 COLCA2A8K830 154 aa7.7□□□□□ -1.18
CCDC40-216ENST00000576241 SLC25A20O43772 301 aa7.7□□□□□ -1.18
CCDC40-216ENST00000576241 HINT1P49773 126 aaPredicted RBP7.7□□□□□ -1.18
CCDC40-216ENST00000576241 ADAMTSL4-AS1Q5T5F5 129 aa7.7□□□□□ -1.18
CCDC40-216ENST00000576241 C9orf153Q5TBE3 101 aa7.7□□□□□ -1.18
CCDC40-216ENST00000576241 SOSTDC1Q6X4U4 206 aa7.7□□□□□ -1.18
CCDC40-216ENST00000576241 Q8N377 158 aa7.7□□□□□ -1.18
CCDC40-216ENST00000576241 LINC01547P58512 204 aaPredicted RBP7.69□□□□□ -1.18
CCDC40-216ENST00000576241 EIF4EBP3O60516 100 aaPredicted RBP7.68□□□□□ -1.18
CCDC40-216ENST00000576241 ASB16-AS1Q495Z4 193 aa7.68□□□□□ -1.18
CCDC40-216ENST00000576241 SLC7A5P1Q8MH63 180 aa7.68□□□□□ -1.18
CCDC40-216ENST00000576241 C5orf52A6NGY3 159 aa7.67□□□□□ -1.18
CCDC40-216ENST00000576241 SYS1-DBNDD2H3BUS1 97 aa7.67□□□□□ -1.18
CCDC40-216ENST00000576241 SEC61BP60468 96 aaKnown RBP7.67□□□□□ -1.18
CCDC40-216ENST00000576241 OR13C6PQ8NH95 151 aa7.67□□□□□ -1.18
CCDC40-216ENST00000576241 SPANXCQ9NY87 97 aa7.67□□□□□ -1.18
CCDC40-216ENST00000576241 ST20-AS1Q8NBB2 130 aa7.66□□□□□ -1.18
CCDC40-216ENST00000576241 TIMM17BO60830 172 aa7.65□□□□□ -1.18
CCDC40-216ENST00000576241 LINC00308Q8TCZ7 52 aa7.65□□□□□ -1.18
CCDC40-216ENST00000576241 SLC25A34Q6PIV7 304 aa7.64□□□□□ -1.19
CCDC40-216ENST00000576241 LITAFQ99732 161 aa7.64□□□□□ -1.19
CCDC40-216ENST00000576241 DHRS4-AS1Q9P1J3 65 aa7.64□□□□□ -1.19
CCDC40-216ENST00000576241 ZNF815PA8K554 130 aa7.63□□□□□ -1.19
CCDC40-216ENST00000576241 LINC01545Q5VT33 79 aa7.63□□□□□ -1.19
CCDC40-216ENST00000576241 SPANXDQ9BXN6 97 aa7.63□□□□□ -1.19
CCDC40-216ENST00000576241 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.62□□□□□ -1.19
CCDC40-216ENST00000576241 HIST1H2BKO60814 126 aa7.62□□□□□ -1.19
CCDC40-216ENST00000576241 HIST1H2BJP06899 126 aa7.62□□□□□ -1.19
CCDC40-216ENST00000576241 HIST1H2BOP23527 126 aa7.62□□□□□ -1.19
CCDC40-216ENST00000576241 HIST1H2BBP33778 126 aa7.62□□□□□ -1.19
CCDC40-216ENST00000576241 HIST1H2BDP58876 126 aa7.62□□□□□ -1.19
CCDC40-216ENST00000576241 HIST1H2BCP62807 126 aa7.62□□□□□ -1.19
CCDC40-216ENST00000576241 HIST2H2BEQ16778 126 aa7.62□□□□□ -1.19
CCDC40-216ENST00000576241 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.62□□□□□ -1.19
CCDC40-216ENST00000576241 PET117Q6UWS5 81 aa7.62□□□□□ -1.19
CCDC40-216ENST00000576241 HIST1H2BHQ93079 126 aa7.62□□□□□ -1.19
CCDC40-216ENST00000576241 HIST1H2BNQ99877 126 aa7.62□□□□□ -1.19
CCDC40-216ENST00000576241 HIST1H2BMQ99879 126 aa7.62□□□□□ -1.19
CCDC40-216ENST00000576241 LINC00518Q8N0U6 118 aa7.6□□□□□ -1.19
CCDC40-216ENST00000576241 LIMD2Q9BT23 127 aa7.6□□□□□ -1.19
CCDC40-216ENST00000576241 SPRR1BP22528 89 aa7.59□□□□□ -1.19
CCDC40-216ENST00000576241 COX7BP24311 80 aa7.59□□□□□ -1.19
CCDC40-216ENST00000576241 XP32Q5T750 250 aa7.59□□□□□ -1.19
CCDC40-216ENST00000576241 LAMTOR3Q9UHA4 124 aa7.59□□□□□ -1.19
CCDC40-216ENST00000576241 ELOF1P60002 83 aaKnown RBP7.58□□□□□ -1.2
CCDC40-216ENST00000576241 C6orf99Q4VX62 202 aa7.58□□□□□ -1.2
CCDC40-216ENST00000576241 TTTY13Q9BZ97 58 aa7.58□□□□□ -1.2
CCDC40-216ENST00000576241 S100A1P23297 94 aa7.57□□□□□ -1.2
CCDC40-216ENST00000576241 HRCT1Q6UXD1 115 aa7.57□□□□□ -1.2
CCDC40-216ENST00000576241 SCGB1D4Q6XE38 83 aa7.57□□□□□ -1.2
CCDC40-216ENST00000576241 C3orf79P0CE67 100 aa7.56□□□□□ -1.2
CCDC40-216ENST00000576241 KRTDAPP60985 99 aa7.56□□□□□ -1.2
CCDC40-216ENST00000576241 TAL2Q16559 108 aa7.56□□□□□ -1.2
CCDC40-216ENST00000576241 COPS9Q8WXC6 57 aa7.56□□□□□ -1.2
CCDC40-216ENST00000576241 KRTAP4-1Q9BYQ7 146 aa7.56□□□□□ -1.2
CCDC40-216ENST00000576241 C20orf202A1L168 122 aa7.55□□□□□ -1.2
CCDC40-216ENST00000576241 Q1RN00 199 aa7.54□□□□□ -1.2
CCDC40-216ENST00000576241 DEFB105AQ8NG35 78 aa7.54□□□□□ -1.2
CCDC40-216ENST00000576241 TRBV7-6A0A0J9YX20 115 aa7.53□□□□□ -1.2
CCDC40-216ENST00000576241 TEX49A0A1B0GTD5 131 aa7.53□□□□□ -1.2
CCDC40-216ENST00000576241 PRO1933Q9H354 126 aa7.53□□□□□ -1.2
CCDC40-216ENST00000576241 A0A1B0GWB2 263 aa7.51□□□□□ -1.21
CCDC40-216ENST00000576241 A6NDN8 102 aa7.51□□□□□ -1.21
CCDC40-216ENST00000576241 IFITM1P13164 125 aa7.51□□□□□ -1.21
CCDC40-216ENST00000576241 CD164Q04900 197 aa7.51□□□□□ -1.21
CCDC40-216ENST00000576241 COA6Q5JTJ3 125 aaKnown RBP7.51□□□□□ -1.21
CCDC40-216ENST00000576241 H7C2G1 150 aa7.5□□□□□ -1.21
CCDC40-216ENST00000576241 Q6ZVH6 145 aa7.5□□□□□ -1.21
CCDC40-216ENST00000576241 C9orf92A6NGG3 77 aa7.49□□□□□ -1.21
CCDC40-216ENST00000576241 ANKRD39Q53RE8 183 aa7.49□□□□□ -1.21
CCDC40-216ENST00000576241 AKR1D1P51857 326 aa7.48□□□□□ -1.21
CCDC40-216ENST00000576241 ATOH7Q8N100 152 aa7.48□□□□□ -1.21
CCDC40-216ENST00000576241 A4D1N5 150 aa7.47□□□□□ -1.21
CCDC40-216ENST00000576241 MUSTN1Q8IVN3 82 aa7.47□□□□□ -1.21
CCDC40-216ENST00000576241 IGLV5-48A0A075B6I7 105 aa7.46□□□□□ -1.22
CCDC40-216ENST00000576241 TRAV13-2A0A0B4J235 113 aa7.46□□□□□ -1.22
CCDC40-216ENST00000576241 PCOTHQ58A44 107 aa7.46□□□□□ -1.22
CCDC40-216ENST00000576241 NHP2Q9NX24 153 aaKnown RBP7.46□□□□□ -1.22
CCDC40-216ENST00000576241 LCE2CQ5TA81 110 aa7.45□□□□□ -1.22
CCDC40-216ENST00000576241 SMIM29Q86T20 159 aa7.45□□□□□ -1.22
CCDC40-216ENST00000576241 PCP2Q8IVA1 136 aa7.45□□□□□ -1.22
CCDC40-216ENST00000576241 IGLV8-61A0A075B6I0 122 aa7.44□□□□□ -1.22
CCDC40-216ENST00000576241 Q5XG85 94 aa7.44□□□□□ -1.22
CCDC40-216ENST00000576241 SNRPEP62304 92 aaKnown RBP7.43□□□□□ -1.22
CCDC40-216ENST00000576241 SMIM11BQ8TCY0 68 aa7.43□□□□□ -1.22
CCDC40-216ENST00000576241 VAMP3Q15836 100 aa7.41□□□□□ -1.22
CCDC40-216ENST00000576241 C1orf195Q5TG92 126 aa7.41□□□□□ -1.22
CCDC40-216ENST00000576241 A0A0G2JQZ4 141 aa7.4□□□□□ -1.22
CCDC40-216ENST00000576241 F8WEM9 126 aa7.4□□□□□ -1.22
CCDC40-216ENST00000576241 CFC1BP0CG36 223 aa7.4□□□□□ -1.22
CCDC40-216ENST00000576241 TCL1BO95988 128 aa7.39□□□□□ -1.23
CCDC40-216ENST00000576241 LORP23490 312 aaPredicted RBP7.39□□□□□ -1.23
CCDC40-216ENST00000576241 MT1HP80294 61 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms