RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 HEPN1Q6WQI6 88 aa2.77□□□□□ -1.97
VPS53-219ENST00000576019 ATG5Q9H1Y0 275 aa2.77□□□□□ -1.97
VPS53-219ENST00000576019 NPVFQ9HCQ7 196 aa2.77□□□□□ -1.97
VPS53-219ENST00000576019 KRTAP9-6A8MVA2 160 aa2.76□□□□□ -1.97
VPS53-219ENST00000576019 ADCYAP1P18509 176 aa2.76□□□□□ -1.97
VPS53-219ENST00000576019 VSTM2AQ8TAG5 236 aa2.76□□□□□ -1.97
VPS53-219ENST00000576019 LINC00052Q96N35 136 aa2.76□□□□□ -1.97
VPS53-219ENST00000576019 TMEM14BQ9NUH8 114 aa2.76□□□□□ -1.97
VPS53-219ENST00000576019 BET1LQ9NYM9 111 aa2.76□□□□□ -1.97
VPS53-219ENST00000576019 ORMDL1Q9P0S3 153 aa2.76□□□□□ -1.97
VPS53-219ENST00000576019 AP4S1Q9Y587 144 aa2.76□□□□□ -1.97
VPS53-219ENST00000576019 H3BUA1 57 aa2.75□□□□□ -1.97
VPS53-219ENST00000576019 MRPS14O60783 128 aaKnown RBP2.75□□□□□ -1.97
VPS53-219ENST00000576019 NDUFB6O95139 128 aa2.75□□□□□ -1.97
VPS53-219ENST00000576019 IL5P05113 134 aa2.75□□□□□ -1.97
VPS53-219ENST00000576019 IGKV4-1P06312 121 aa2.75□□□□□ -1.97
VPS53-219ENST00000576019 TRAPPC2P0DI81 140 aa2.75□□□□□ -1.97
VPS53-219ENST00000576019 TRAPPC2BP0DI82 140 aa2.75□□□□□ -1.97
VPS53-219ENST00000576019 KRTAP5-9P26371 169 aa2.75□□□□□ -1.97
VPS53-219ENST00000576019 C10orf55Q5SWW7 151 aa2.75□□□□□ -1.97
VPS53-219ENST00000576019 OR10AG1Q8NH19 301 aa2.75□□□□□ -1.97
VPS53-219ENST00000576019 FLGP20930 4061 aaPredicted RBP2.74□□□□□ -1.97
VPS53-219ENST00000576019 FAM24AA6NFZ4 105 aa2.74□□□□□ -1.97
VPS53-219ENST00000576019 H3BQ15 152 aa2.74□□□□□ -1.97
VPS53-219ENST00000576019 COX7CP15954 63 aa2.74□□□□□ -1.97
VPS53-219ENST00000576019 NPC2P61916 151 aa2.74□□□□□ -1.97
VPS53-219ENST00000576019 DSCR8Q96T75 97 aa2.74□□□□□ -1.97
VPS53-219ENST00000576019 TMEM242Q9NWH2 141 aa2.74□□□□□ -1.97
VPS53-219ENST00000576019 TRBV6-5A0A0K0K1A5 114 aa2.73□□□□□ -1.97
VPS53-219ENST00000576019 RNASE3P12724 160 aaKnown RBP2.73□□□□□ -1.97
VPS53-219ENST00000576019 UNQ5815/PRO19632Q6UWF5 114 aa2.73□□□□□ -1.97
VPS53-219ENST00000576019 CDC42SE1Q9NRR8 79 aa2.73□□□□□ -1.97
VPS53-219ENST00000576019 RBAKDNA6NC62 111 aa2.72□□□□□ -1.97
VPS53-219ENST00000576019 H3BRM9 83 aa2.72□□□□□ -1.97
VPS53-219ENST00000576019 SSSCA1O60232 199 aa2.72□□□□□ -1.97
VPS53-219ENST00000576019 SNCGO76070 127 aa2.72□□□□□ -1.97
VPS53-219ENST00000576019 DEFA5Q01523 94 aa2.72□□□□□ -1.97
VPS53-219ENST00000576019 IQCJQ1A5X6 159 aa2.72□□□□□ -1.97
VPS53-219ENST00000576019 TDRG1Q3Y452 100 aa2.72□□□□□ -1.97
VPS53-219ENST00000576019 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.72□□□□□ -1.97
VPS53-219ENST00000576019 SPTSSAQ969W0 71 aa2.72□□□□□ -1.97
VPS53-219ENST00000576019 KLK9Q9UKQ9 250 aa2.72□□□□□ -1.97
VPS53-219ENST00000576019 A0A1B0GWA3 101 aa2.71□□□□□ -1.98
VPS53-219ENST00000576019 K7EP34 96 aa2.71□□□□□ -1.98
VPS53-219ENST00000576019 M0R2T5 61 aa2.71□□□□□ -1.98
VPS53-219ENST00000576019 IGKCP01834 107 aa2.71□□□□□ -1.98
VPS53-219ENST00000576019 PEA15Q15121 130 aa2.71□□□□□ -1.98
VPS53-219ENST00000576019 Q5BKY6 102 aa2.71□□□□□ -1.98
VPS53-219ENST00000576019 KRTAP5-1Q6L8H4 278 aa2.71□□□□□ -1.98
VPS53-219ENST00000576019 USMG5Q96IX5 58 aa2.71□□□□□ -1.98
VPS53-219ENST00000576019 FAM103A1Q9BTL3 118 aaKnown RBP2.71□□□□□ -1.98
VPS53-219ENST00000576019 J3QRE1 110 aa2.7□□□□□ -1.98
VPS53-219ENST00000576019 IGLV3-1P01715 115 aa2.7□□□□□ -1.98
VPS53-219ENST00000576019 IGHV3-33P01772 117 aa2.7□□□□□ -1.98
VPS53-219ENST00000576019 NMBP08949 121 aa2.7□□□□□ -1.98
VPS53-219ENST00000576019 POLR2JP52435 117 aaKnown RBP2.7□□□□□ -1.98
VPS53-219ENST00000576019 RHOHQ15669 191 aa2.7□□□□□ -1.98
VPS53-219ENST00000576019 C12orf73Q69YU5 71 aa2.7□□□□□ -1.98
VPS53-219ENST00000576019 KRTAP5-10Q6L8G5 202 aa2.7□□□□□ -1.98
VPS53-219ENST00000576019 KRTAP5-7Q6L8G8 165 aa2.7□□□□□ -1.98
VPS53-219ENST00000576019 KRTAP5-4Q6L8H1 288 aa2.7□□□□□ -1.98
VPS53-219ENST00000576019 CSAG1Q6PB30 78 aa2.7□□□□□ -1.98
VPS53-219ENST00000576019 Q8N8P6 123 aa2.7□□□□□ -1.98
VPS53-219ENST00000576019 TSKUQ8WUA8 353 aa2.7□□□□□ -1.98
VPS53-219ENST00000576019 NDUFA12Q9UI09 145 aa2.7□□□□□ -1.98
VPS53-219ENST00000576019 TRBV6-4A0A1B0GX49 114 aa2.69□□□□□ -1.98
VPS53-219ENST00000576019 NDUFA3O95167 84 aa2.69□□□□□ -1.98
VPS53-219ENST00000576019 KRTAP13-3Q3SY46 172 aa2.69□□□□□ -1.98
VPS53-219ENST00000576019 S100A7L2Q5SY68 101 aa2.69□□□□□ -1.98
VPS53-219ENST00000576019 LINC00299Q6ZSB3 139 aa2.69□□□□□ -1.98
VPS53-219ENST00000576019 RPS27LQ71UM5 84 aaKnown RBP2.69□□□□□ -1.98
VPS53-219ENST00000576019 C5orf38Q86SI9 138 aa2.69□□□□□ -1.98
VPS53-219ENST00000576019 S100A13Q99584 98 aa2.69□□□□□ -1.98
VPS53-219ENST00000576019 SLC25A6P12236 298 aa2.68□□□□□ -1.98
VPS53-219ENST00000576019 SNCAP37840 140 aa2.68□□□□□ -1.98
VPS53-219ENST00000576019 WFDC2Q14508 124 aa2.68□□□□□ -1.98
VPS53-219ENST00000576019 INSL4Q14641 139 aa2.68□□□□□ -1.98
VPS53-219ENST00000576019 ALKAL2Q6UX46 152 aa2.68□□□□□ -1.98
VPS53-219ENST00000576019 LEAP2Q969E1 77 aa2.68□□□□□ -1.98
VPS53-219ENST00000576019 AMELYQ99218 206 aa2.68□□□□□ -1.98
VPS53-219ENST00000576019 LIMD2Q9BT23 127 aa2.68□□□□□ -1.98
VPS53-219ENST00000576019 UBE2L5PA0A1B0GUS4 154 aa2.67□□□□□ -1.98
VPS53-219ENST00000576019 IGLC7A0M8Q6 106 aa2.67□□□□□ -1.98
VPS53-219ENST00000576019 TMEM30CPA0ZSE6 113 aa2.67□□□□□ -1.98
VPS53-219ENST00000576019 M0R135 149 aa2.67□□□□□ -1.98
VPS53-219ENST00000576019 HMGN4O00479 90 aa2.67□□□□□ -1.98
VPS53-219ENST00000576019 ATP5EP56381 51 aaPredicted RBP2.67□□□□□ -1.98
VPS53-219ENST00000576019 UBE2L3P68036 154 aaKnown RBP2.67□□□□□ -1.98
VPS53-219ENST00000576019 SPANXN1Q5VSR9 72 aa2.67□□□□□ -1.98
VPS53-219ENST00000576019 SPINK6Q6UWN8 80 aa2.67□□□□□ -1.98
VPS53-219ENST00000576019 GNGT2O14610 69 aa2.66□□□□□ -1.98
VPS53-219ENST00000576019 NUPR1O60356 82 aa2.66□□□□□ -1.98
VPS53-219ENST00000576019 SFT2D2O95562 160 aa2.66□□□□□ -1.98
VPS53-219ENST00000576019 DNAL4O96015 105 aa2.66□□□□□ -1.98
VPS53-219ENST00000576019 LYPD5Q6UWN5 251 aa2.66□□□□□ -1.98
VPS53-219ENST00000576019 UQCR10Q9UDW1 63 aa2.66□□□□□ -1.98
VPS53-219ENST00000576019 TRGV2A0A075B6R0 118 aa2.65□□□□□ -1.99
VPS53-219ENST00000576019 TRAV2A0A0B4J234 112 aa2.65□□□□□ -1.99
VPS53-219ENST00000576019 TRBV7-7A0A0K0K1E9 115 aa2.65□□□□□ -1.99
VPS53-219ENST00000576019 CYB5AP00167 134 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms