RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 DPM2O94777 84 aa4.37□□□□□ -1.71
NUP88-205ENST00000572809 TSPAN13O95857 204 aa4.37□□□□□ -1.71
NUP88-205ENST00000572809 IGKCP01834 107 aa4.37□□□□□ -1.71
NUP88-205ENST00000572809 PLEKHB2Q96CS7 222 aa4.37□□□□□ -1.71
NUP88-205ENST00000572809 PMCHL2Q9BQD1 86 aa4.37□□□□□ -1.71
NUP88-205ENST00000572809 IGKV2D-26A0A0A0MRZ7 120 aa4.36□□□□□ -1.71
NUP88-205ENST00000572809 J3QQQ9 107 aa4.36□□□□□ -1.71
NUP88-205ENST00000572809 HERVK_113P61574 105 aa4.36□□□□□ -1.71
NUP88-205ENST00000572809 PRR4Q16378 134 aa4.36□□□□□ -1.71
NUP88-205ENST00000572809 FAM229BQ4G0N7 80 aa4.36□□□□□ -1.71
NUP88-205ENST00000572809 LOC107984156A0A0G2JMH3 177 aa4.35□□□□□ -1.71
NUP88-205ENST00000572809 NCR3O14931 201 aa4.35□□□□□ -1.71
NUP88-205ENST00000572809 LGALS3P17931 250 aaKnown RBP4.35□□□□□ -1.71
NUP88-205ENST00000572809 NMUP48645 174 aa4.35□□□□□ -1.71
NUP88-205ENST00000572809 TSPEAR-AS2P59090 65 aa4.35□□□□□ -1.71
NUP88-205ENST00000572809 KRTAP13-2Q52LG2 175 aa4.35□□□□□ -1.71
NUP88-205ENST00000572809 ARL17AQ8IVW1 177 aa4.35□□□□□ -1.71
NUP88-205ENST00000572809 HIGD2AQ9BW72 106 aa4.35□□□□□ -1.71
NUP88-205ENST00000572809 HIST1H2BKO60814 126 aa4.34□□□□□ -1.71
NUP88-205ENST00000572809 HIST1H2BJP06899 126 aa4.34□□□□□ -1.71
NUP88-205ENST00000572809 HIST1H2BOP23527 126 aa4.34□□□□□ -1.71
NUP88-205ENST00000572809 HIST1H2BBP33778 126 aa4.34□□□□□ -1.71
NUP88-205ENST00000572809 HIST1H2BDP58876 126 aa4.34□□□□□ -1.71
NUP88-205ENST00000572809 HIST1H2BCP62807 126 aa4.34□□□□□ -1.71
NUP88-205ENST00000572809 S100A12P80511 92 aa4.34□□□□□ -1.71
NUP88-205ENST00000572809 HIST2H2BEQ16778 126 aa4.34□□□□□ -1.71
NUP88-205ENST00000572809 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.34□□□□□ -1.71
NUP88-205ENST00000572809 LINC00337Q8N6G1 96 aa4.34□□□□□ -1.71
NUP88-205ENST00000572809 DAND5Q8N907 189 aa4.34□□□□□ -1.71
NUP88-205ENST00000572809 HIST1H2BHQ93079 126 aa4.34□□□□□ -1.71
NUP88-205ENST00000572809 HIST1H2BNQ99877 126 aa4.34□□□□□ -1.71
NUP88-205ENST00000572809 HIST1H2BMQ99879 126 aa4.34□□□□□ -1.71
NUP88-205ENST00000572809 KCNQ1DNQ9H478 68 aa4.34□□□□□ -1.71
NUP88-205ENST00000572809 LRP2P98164 4655 aa4.33□□□□□ -1.72
NUP88-205ENST00000572809 TRBV10-3A0A0K0K1G6 114 aa4.33□□□□□ -1.72
NUP88-205ENST00000572809 SYS1-DBNDD2H3BUS1 97 aa4.33□□□□□ -1.72
NUP88-205ENST00000572809 LINC00304Q8N9R0 145 aa4.33□□□□□ -1.72
NUP88-205ENST00000572809 SMCR5Q8TEV8 140 aa4.33□□□□□ -1.72
NUP88-205ENST00000572809 TRBV10-2A0A0K0K1G8 114 aa4.32□□□□□ -1.72
NUP88-205ENST00000572809 ETDCA0A1B0GVM5 59 aa4.32□□□□□ -1.72
NUP88-205ENST00000572809 E9PLD3 99 aa4.32□□□□□ -1.72
NUP88-205ENST00000572809 KRTAP4-16G5E9R7 235 aaPredicted RBP4.32□□□□□ -1.72
NUP88-205ENST00000572809 DDTP30046 118 aa4.32□□□□□ -1.72
NUP88-205ENST00000572809 SPRR1AP35321 89 aa4.32□□□□□ -1.72
NUP88-205ENST00000572809 SPRR4Q96PI1 79 aa4.32□□□□□ -1.72
NUP88-205ENST00000572809 MIEN1Q9BRT3 115 aa4.32□□□□□ -1.72
NUP88-205ENST00000572809 ZNF706Q9Y5V0 76 aaPredicted RBP4.32□□□□□ -1.72
NUP88-205ENST00000572809 A0A0J9YXY3 114 aa4.31□□□□□ -1.72
NUP88-205ENST00000572809 NDUFC2O95298 119 aa4.31□□□□□ -1.72
NUP88-205ENST00000572809 CTAG1AP78358 180 aa4.31□□□□□ -1.72
NUP88-205ENST00000572809 ADAMTSL4-AS1Q5T5F5 129 aa4.31□□□□□ -1.72
NUP88-205ENST00000572809 C3orf22Q8N5N4 141 aa4.31□□□□□ -1.72
NUP88-205ENST00000572809 NPC2P61916 151 aa4.3□□□□□ -1.72
NUP88-205ENST00000572809 S100A7L2Q5SY68 101 aa4.3□□□□□ -1.72
NUP88-205ENST00000572809 LINC01545Q5VT33 79 aa4.3□□□□□ -1.72
NUP88-205ENST00000572809 SPANXB1Q9NS25 103 aaPredicted RBP4.3□□□□□ -1.72
NUP88-205ENST00000572809 LPAP08519 4548 aa4.3□□□□□ -1.72
NUP88-205ENST00000572809 IGLV6-57P01721 117 aa4.29□□□□□ -1.72
NUP88-205ENST00000572809 C3orf79P0CE67 100 aa4.29□□□□□ -1.72
NUP88-205ENST00000572809 SPAG11AQ6PDA7 123 aa4.29□□□□□ -1.72
NUP88-205ENST00000572809 SOSTDC1Q6X4U4 206 aa4.29□□□□□ -1.72
NUP88-205ENST00000572809 PPDPFQ9H3Y8 114 aa4.29□□□□□ -1.72
NUP88-205ENST00000572809 COA6Q5JTJ3 125 aaKnown RBP4.28□□□□□ -1.72
NUP88-205ENST00000572809 RETNLBQ9BQ08 111 aa4.28□□□□□ -1.72
NUP88-205ENST00000572809 TRAV23DV6A0A075B6W5 121 aa4.27□□□□□ -1.73
NUP88-205ENST00000572809 TIMM17BO60830 172 aa4.27□□□□□ -1.73
NUP88-205ENST00000572809 ERC2-IT1O76042 136 aa4.27□□□□□ -1.73
NUP88-205ENST00000572809 KRTDAPP60985 99 aa4.27□□□□□ -1.73
NUP88-205ENST00000572809 JOSD1Q15040 202 aaPredicted RBP4.27□□□□□ -1.73
NUP88-205ENST00000572809 LINC00483Q53H64 154 aa4.27□□□□□ -1.73
NUP88-205ENST00000572809 Q6ZRX8 168 aa4.27□□□□□ -1.73
NUP88-205ENST00000572809 LINC00308Q8TCZ7 52 aa4.27□□□□□ -1.73
NUP88-205ENST00000572809 LITAFQ99732 161 aa4.27□□□□□ -1.73
NUP88-205ENST00000572809 Q9BRP9 147 aa4.27□□□□□ -1.73
NUP88-205ENST00000572809 KRTAP2-2Q9BYT5 123 aa4.27□□□□□ -1.73
NUP88-205ENST00000572809 IGLV7-46A0A075B6I9 117 aa4.26□□□□□ -1.73
NUP88-205ENST00000572809 ZNF815PA8K554 130 aa4.26□□□□□ -1.73
NUP88-205ENST00000572809 ZNF73O43830 326 aaPredicted RBP4.26□□□□□ -1.73
NUP88-205ENST00000572809 HINT1P49773 126 aaPredicted RBP4.26□□□□□ -1.73
NUP88-205ENST00000572809 Q8NBF4 154 aa4.26□□□□□ -1.73
NUP88-205ENST00000572809 OR13C6PQ8NH95 151 aa4.26□□□□□ -1.73
NUP88-205ENST00000572809 TTTY13Q9BZ97 58 aa4.26□□□□□ -1.73
NUP88-205ENST00000572809 SPANXCQ9NY87 97 aa4.26□□□□□ -1.73
NUP88-205ENST00000572809 CBY1Q9Y3M2 126 aa4.26□□□□□ -1.73
NUP88-205ENST00000572809 LINC01547P58512 204 aaPredicted RBP4.25□□□□□ -1.73
NUP88-205ENST00000572809 SSBP3-AS1Q7Z2R9 100 aa4.25□□□□□ -1.73
NUP88-205ENST00000572809 SMIM29Q86T20 159 aa4.25□□□□□ -1.73
NUP88-205ENST00000572809 C20orf202A1L168 122 aa4.24□□□□□ -1.73
NUP88-205ENST00000572809 SPINK1P00995 79 aa4.24□□□□□ -1.73
NUP88-205ENST00000572809 SCGB1D4Q6XE38 83 aa4.24□□□□□ -1.73
NUP88-205ENST00000572809 LINC00518Q8N0U6 118 aa4.24□□□□□ -1.73
NUP88-205ENST00000572809 RNF213Q63HN8 5207 aa4.23□□□□□ -1.73
NUP88-205ENST00000572809 AKR1D1P51857 326 aa4.23□□□□□ -1.73
NUP88-205ENST00000572809 TPRXLQ17RH7 258 aa4.23□□□□□ -1.73
NUP88-205ENST00000572809 ATOH7Q8N100 152 aa4.23□□□□□ -1.73
NUP88-205ENST00000572809 SPANXDQ9BXN6 97 aa4.23□□□□□ -1.73
NUP88-205ENST00000572809 MOBPQ13875 183 aa4.22□□□□□ -1.73
NUP88-205ENST00000572809 LCE1EQ5T753 118 aa4.22□□□□□ -1.73
NUP88-205ENST00000572809 ST20-AS1Q8NBB2 130 aa4.22□□□□□ -1.73
NUP88-205ENST00000572809 COPS9Q8WXC6 57 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms