RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 SMCR5Q8TEV8 140 aa5.61□□□□□ -1.51
CIITA-207ENST00000571545 HINT1P49773 126 aaPredicted RBP5.6□□□□□ -1.51
CIITA-207ENST00000571545 LINC00310P59036 64 aa5.6□□□□□ -1.51
CIITA-207ENST00000571545 RPS29P62273 56 aaKnown RBP5.6□□□□□ -1.51
CIITA-207ENST00000571545 Q6ZRX8 168 aa5.6□□□□□ -1.51
CIITA-207ENST00000571545 Q8NBF4 154 aa5.6□□□□□ -1.51
CIITA-207ENST00000571545 PPDPFQ9H3Y8 114 aa5.6□□□□□ -1.51
CIITA-207ENST00000571545 LPAP08519 4548 aa5.6□□□□□ -1.51
CIITA-207ENST00000571545 B5MCH6 92 aa5.59□□□□□ -1.51
CIITA-207ENST00000571545 DAND5Q8N907 189 aa5.59□□□□□ -1.51
CIITA-207ENST00000571545 TRAV23DV6A0A075B6W5 121 aa5.58□□□□□ -1.52
CIITA-207ENST00000571545 C5orf52A6NGY3 159 aa5.58□□□□□ -1.52
CIITA-207ENST00000571545 E9PLD3 99 aa5.58□□□□□ -1.52
CIITA-207ENST00000571545 IGLV6-57P01721 117 aa5.58□□□□□ -1.52
CIITA-207ENST00000571545 GAGE2AQ6NT46 116 aa5.58□□□□□ -1.52
CIITA-207ENST00000571545 SSBP3-AS1Q7Z2R9 100 aa5.58□□□□□ -1.52
CIITA-207ENST00000571545 PMCHL2Q9BQD1 86 aa5.57□□□□□ -1.52
CIITA-207ENST00000571545 IGLV9-49A0A0B4J1Y8 123 aa5.56□□□□□ -1.52
CIITA-207ENST00000571545 A0A0J9YXY3 114 aa5.56□□□□□ -1.52
CIITA-207ENST00000571545 COLCA2A8K830 154 aa5.56□□□□□ -1.52
CIITA-207ENST00000571545 ZNF73O43830 326 aaPredicted RBP5.56□□□□□ -1.52
CIITA-207ENST00000571545 TIMM17BO60830 172 aa5.56□□□□□ -1.52
CIITA-207ENST00000571545 MOBPQ13875 183 aa5.56□□□□□ -1.52
CIITA-207ENST00000571545 SLC25A34Q6PIV7 304 aa5.56□□□□□ -1.52
CIITA-207ENST00000571545 SPANXCQ9NY87 97 aa5.56□□□□□ -1.52
CIITA-207ENST00000571545 SYS1-DBNDD2H3BUS1 97 aa5.55□□□□□ -1.52
CIITA-207ENST00000571545 COPS9Q8WXC6 57 aa5.55□□□□□ -1.52
CIITA-207ENST00000571545 Q9BRP9 147 aa5.55□□□□□ -1.52
CIITA-207ENST00000571545 SLC25A20O43772 301 aa5.54□□□□□ -1.52
CIITA-207ENST00000571545 KRTAP19-4Q3LI73 84 aa5.54□□□□□ -1.52
CIITA-207ENST00000571545 LCE1DQ5T752 114 aa5.54□□□□□ -1.52
CIITA-207ENST00000571545 ERC2-IT1O76042 136 aa5.53□□□□□ -1.52
CIITA-207ENST00000571545 C9orf153Q5TBE3 101 aa5.53□□□□□ -1.52
CIITA-207ENST00000571545 LINC01545Q5VT33 79 aa5.53□□□□□ -1.52
CIITA-207ENST00000571545 PET117Q6UWS5 81 aa5.53□□□□□ -1.52
CIITA-207ENST00000571545 LINC00518Q8N0U6 118 aa5.53□□□□□ -1.52
CIITA-207ENST00000571545 DHRS4-AS1Q9P1J3 65 aa5.53□□□□□ -1.52
CIITA-207ENST00000571545 HIST1H2BKO60814 126 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 HIST1H2BJP06899 126 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 HIST1H2BOP23527 126 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 HIST1H2BBP33778 126 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 AKR1D1P51857 326 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 HIST1H2BDP58876 126 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 NPC2P61916 151 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 HIST1H2BCP62807 126 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 HIST2H2BEQ16778 126 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.52□□□□□ -1.53
CIITA-207ENST00000571545 ADAMTSL4-AS1Q5T5F5 129 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 SLC7A5P1Q8MH63 180 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 LINC00308Q8TCZ7 52 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 HIST1H2BHQ93079 126 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 HIST1H2BNQ99877 126 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 HIST1H2BMQ99879 126 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 SPANXDQ9BXN6 97 aa5.52□□□□□ -1.53
CIITA-207ENST00000571545 MUC2Q02817 5179 aa5.51□□□□□ -1.53
CIITA-207ENST00000571545 C20orf202A1L168 122 aa5.51□□□□□ -1.53
CIITA-207ENST00000571545 ZNF815PA8K554 130 aa5.51□□□□□ -1.53
CIITA-207ENST00000571545 KRTAP13-3Q3SY46 172 aa5.51□□□□□ -1.53
CIITA-207ENST00000571545 SOSTDC1Q6X4U4 206 aa5.51□□□□□ -1.53
CIITA-207ENST00000571545 Q8N377 158 aa5.51□□□□□ -1.53
CIITA-207ENST00000571545 OR13C6PQ8NH95 151 aa5.51□□□□□ -1.53
CIITA-207ENST00000571545 SEC61BP60468 96 aaKnown RBP5.5□□□□□ -1.53
CIITA-207ENST00000571545 LIMD2Q9BT23 127 aa5.5□□□□□ -1.53
CIITA-207ENST00000571545 ASB16-AS1Q495Z4 193 aa5.49□□□□□ -1.53
CIITA-207ENST00000571545 SCGB1D4Q6XE38 83 aa5.49□□□□□ -1.53
CIITA-207ENST00000571545 LITAFQ99732 161 aa5.49□□□□□ -1.53
CIITA-207ENST00000571545 SPRR1BP22528 89 aa5.48□□□□□ -1.53
CIITA-207ENST00000571545 LCE4AQ5TA78 99 aa5.48□□□□□ -1.53
CIITA-207ENST00000571545 LAMTOR3Q9UHA4 124 aa5.48□□□□□ -1.53
CIITA-207ENST00000571545 TRBV7-6A0A0J9YX20 115 aa5.47□□□□□ -1.53
CIITA-207ENST00000571545 IFITM1P13164 125 aa5.47□□□□□ -1.53
CIITA-207ENST00000571545 COX7BP24311 80 aa5.47□□□□□ -1.53
CIITA-207ENST00000571545 ELOF1P60002 83 aaKnown RBP5.47□□□□□ -1.53
CIITA-207ENST00000571545 Q6ZVH6 145 aa5.47□□□□□ -1.53
CIITA-207ENST00000571545 C3orf79P0CE67 100 aa5.46□□□□□ -1.54
CIITA-207ENST00000571545 KRTDAPP60985 99 aa5.46□□□□□ -1.54
CIITA-207ENST00000571545 COA6Q5JTJ3 125 aaKnown RBP5.46□□□□□ -1.54
CIITA-207ENST00000571545 ST20-AS1Q8NBB2 130 aa5.46□□□□□ -1.54
CIITA-207ENST00000571545 KRTAP4-7Q9BYR0 210 aa5.46□□□□□ -1.54
CIITA-207ENST00000571545 C6orf99Q4VX62 202 aa5.45□□□□□ -1.54
CIITA-207ENST00000571545 A0A1B0GWB2 263 aa5.44□□□□□ -1.54
CIITA-207ENST00000571545 A4D1N5 150 aa5.44□□□□□ -1.54
CIITA-207ENST00000571545 SNRPEP62304 92 aaKnown RBP5.44□□□□□ -1.54
CIITA-207ENST00000571545 CD164Q04900 197 aa5.44□□□□□ -1.54
CIITA-207ENST00000571545 TAL2Q16559 108 aa5.44□□□□□ -1.54
CIITA-207ENST00000571545 NHP2Q9NX24 153 aaKnown RBP5.44□□□□□ -1.54
CIITA-207ENST00000571545 TEX49A0A1B0GTD5 131 aa5.43□□□□□ -1.54
CIITA-207ENST00000571545 TRAV13-2A0A0B4J235 113 aa5.42□□□□□ -1.54
CIITA-207ENST00000571545 LINC01547P58512 204 aaPredicted RBP5.42□□□□□ -1.54
CIITA-207ENST00000571545 TTTY13Q9BZ97 58 aa5.42□□□□□ -1.54
CIITA-207ENST00000571545 PRO1933Q9H354 126 aa5.42□□□□□ -1.54
CIITA-207ENST00000571545 A6NDN8 102 aa5.41□□□□□ -1.54
CIITA-207ENST00000571545 H7C2G1 150 aa5.4□□□□□ -1.54
CIITA-207ENST00000571545 IGLV5-48A0A075B6I7 105 aa5.39□□□□□ -1.55
CIITA-207ENST00000571545 HSBP1L1C9JCN9 74 aa5.39□□□□□ -1.55
CIITA-207ENST00000571545 Q1RN00 199 aa5.39□□□□□ -1.55
CIITA-207ENST00000571545 Q5XG85 94 aa5.39□□□□□ -1.55
CIITA-207ENST00000571545 DEFB105AQ8NG35 78 aa5.39□□□□□ -1.55
CIITA-207ENST00000571545 KRTAP9-7A8MTY7 169 aa5.38□□□□□ -1.55
CIITA-207ENST00000571545 VAMP3Q15836 100 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms