RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-208ENST00000570874 HCG22E2RYF7 251 aa2.37□□□□□ -2.03
SMG6-208ENST00000570874 INSP01308 110 aa2.37□□□□□ -2.03
SMG6-208ENST00000570874 ATXN8Q156A1 80 aa2.37□□□□□ -2.03
SMG6-208ENST00000570874 Q6ZTC4 211 aa2.37□□□□□ -2.03
SMG6-208ENST00000570874 UBE2WQ96B02 151 aa2.37□□□□□ -2.03
SMG6-208ENST00000570874 CDC42SE1Q9NRR8 79 aa2.37□□□□□ -2.03
SMG6-208ENST00000570874 NSD1Q96L73 2696 aaPredicted RBP2.37□□□□□ -2.03
SMG6-208ENST00000570874 NOTCH2Q04721 2471 aa2.36□□□□□ -2.03
SMG6-208ENST00000570874 IGHV3-53P01767 116 aa2.36□□□□□ -2.03
SMG6-208ENST00000570874 IGHV3-30P01768 117 aa2.36□□□□□ -2.03
SMG6-208ENST00000570874 CRPP02741 224 aa2.36□□□□□ -2.03
SMG6-208ENST00000570874 CFC1BP0CG36 223 aa2.36□□□□□ -2.03
SMG6-208ENST00000570874 CFC1P0CG37 223 aa2.36□□□□□ -2.03
SMG6-208ENST00000570874 IGHV3-30-5P0DP03 117 aa2.36□□□□□ -2.03
SMG6-208ENST00000570874 ROMO1P60602 79 aa2.36□□□□□ -2.03
SMG6-208ENST00000570874 CASC2Q6XLA1 102 aa2.36□□□□□ -2.03
SMG6-208ENST00000570874 Q6ZTI0 123 aa2.36□□□□□ -2.03
SMG6-208ENST00000570874 SPTSSBQ8NFR3 76 aa2.36□□□□□ -2.03
SMG6-208ENST00000570874 TEP1Q99973 2627 aaKnown RBP2.36□□□□□ -2.03
SMG6-208ENST00000570874 SETD2Q9BYW2 2564 aaPredicted RBP2.35□□□□□ -2.03
SMG6-208ENST00000570874 IGLV7-46A0A075B6I9 117 aa2.35□□□□□ -2.03
SMG6-208ENST00000570874 TRBV10-2A0A0K0K1G8 114 aa2.35□□□□□ -2.03
SMG6-208ENST00000570874 I3L3M4 83 aa2.35□□□□□ -2.03
SMG6-208ENST00000570874 M0QY20 66 aa2.35□□□□□ -2.03
SMG6-208ENST00000570874 DEFB4AO15263 64 aa2.35□□□□□ -2.03
SMG6-208ENST00000570874 LINC01547P58512 204 aaPredicted RBP2.35□□□□□ -2.03
SMG6-208ENST00000570874 KRTAP10-11P60412 298 aa2.35□□□□□ -2.03
SMG6-208ENST00000570874 RPL39P62891 51 aaKnown RBP2.35□□□□□ -2.03
SMG6-208ENST00000570874 C1orf134Q5TEV5 83 aa2.35□□□□□ -2.03
SMG6-208ENST00000570874 C15orf56Q8N910 161 aa2.35□□□□□ -2.03
SMG6-208ENST00000570874 MUC7Q8TAX7 377 aa2.35□□□□□ -2.03
SMG6-208ENST00000570874 LIMD2Q9BT23 127 aa2.35□□□□□ -2.03
SMG6-208ENST00000570874 NOP10Q9NPE3 64 aaKnown RBP2.35□□□□□ -2.03
SMG6-208ENST00000570874 C14orf132Q9NPU4 83 aa2.35□□□□□ -2.03
SMG6-208ENST00000570874 ICOSQ9Y6W8 199 aa2.35□□□□□ -2.03
SMG6-208ENST00000570874 JMJD1CQ15652 2540 aa2.35□□□□□ -2.03
SMG6-208ENST00000570874 IGLV4-69A0A075B6H9 119 aa2.34□□□□□ -2.03
SMG6-208ENST00000570874 TRAV7A0A075B6U4 112 aa2.34□□□□□ -2.03
SMG6-208ENST00000570874 TRGV1A0A0A0MS02 117 aa2.34□□□□□ -2.03
SMG6-208ENST00000570874 H7C2G1 150 aa2.34□□□□□ -2.03
SMG6-208ENST00000570874 IGHV3-33P01772 117 aa2.34□□□□□ -2.03
SMG6-208ENST00000570874 PRB2P02812 416 aaPredicted RBP2.34□□□□□ -2.03
SMG6-208ENST00000570874 TLX1NBP0CAT3 122 aa2.34□□□□□ -2.03
SMG6-208ENST00000570874 DEFB135Q30KP9 77 aa2.34□□□□□ -2.03
SMG6-208ENST00000570874 SFTA2Q6UW10 78 aa2.34□□□□□ -2.03
SMG6-208ENST00000570874 NTM-AS1Q6ZSK4 140 aa2.34□□□□□ -2.03
SMG6-208ENST00000570874 MIR7-3HGQ8N6C7 128 aa2.34□□□□□ -2.03
SMG6-208ENST00000570874 C1orf64Q8NEQ6 169 aa2.34□□□□□ -2.03
SMG6-208ENST00000570874 CIRBP-AS1Q8TBR5 109 aa2.34□□□□□ -2.03
SMG6-208ENST00000570874 TMEM263Q8WUH6 116 aaKnown RBP2.34□□□□□ -2.03
SMG6-208ENST00000570874 TRAV22A0A0B4J277 110 aa2.33□□□□□ -2.04
SMG6-208ENST00000570874 H3BPC8 53 aa2.33□□□□□ -2.04
SMG6-208ENST00000570874 MIFP14174 115 aa2.33□□□□□ -2.04
SMG6-208ENST00000570874 ZNF22P17026 224 aaPredicted RBP2.33□□□□□ -2.04
SMG6-208ENST00000570874 Q6JHZ5 121 aa2.33□□□□□ -2.04
SMG6-208ENST00000570874 Q6ZQT0 140 aa2.33□□□□□ -2.04
SMG6-208ENST00000570874 C20orf197Q8N268 126 aa2.33□□□□□ -2.04
SMG6-208ENST00000570874 WFDC9Q8NEX5 89 aa2.33□□□□□ -2.04
SMG6-208ENST00000570874 C16orf74Q96GX8 76 aa2.33□□□□□ -2.04
SMG6-208ENST00000570874 AMELXQ99217 191 aa2.33□□□□□ -2.04
SMG6-208ENST00000570874 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.32□□□□□ -2.04
SMG6-208ENST00000570874 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.32□□□□□ -2.04
SMG6-208ENST00000570874 A0A087WSZ3 146 aa2.32□□□□□ -2.04
SMG6-208ENST00000570874 IGKV2-29A2NJV5 120 aaPredicted RBP2.32□□□□□ -2.04
SMG6-208ENST00000570874 F8WEM9 126 aa2.32□□□□□ -2.04
SMG6-208ENST00000570874 H7C423 109 aa2.32□□□□□ -2.04
SMG6-208ENST00000570874 ERC2-IT1O76042 136 aa2.32□□□□□ -2.04
SMG6-208ENST00000570874 RPL36AP83881 106 aaKnown RBP2.32□□□□□ -2.04
SMG6-208ENST00000570874 Q1RN00 199 aa2.32□□□□□ -2.04
SMG6-208ENST00000570874 C2orf82Q6UX34 121 aa2.32□□□□□ -2.04
SMG6-208ENST00000570874 MUSTN1Q8IVN3 82 aa2.32□□□□□ -2.04
SMG6-208ENST00000570874 FBN1P35555 2871 aaKnown RBP2.31□□□□□ -2.04
SMG6-208ENST00000570874 TENM1Q9UKZ4 2725 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 TRGV2A0A075B6R0 118 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 TRAV23DV6A0A075B6W5 121 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 A0A096LPF7 62 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 TRBV10-1A0A0K0K1A3 114 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 BAALC-AS2P0C853 105 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 DNAH10OSP0CZ25 163 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 DEFB130BP0DP73 79 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 DEFB130AP0DP74 79 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 FAM229BQ4G0N7 80 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 ATP5EP2Q5VTU8 51 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 LINC00612Q8N6U2 182 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 Q8NAQ8 132 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 TRRAPQ9Y4A5 3859 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 ATRQ13535 2644 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 FBN3Q75N90 2809 aa2.31□□□□□ -2.04
SMG6-208ENST00000570874 HUWE1Q7Z6Z7 4374 aaKnown RBP2.31□□□□□ -2.04
SMG6-208ENST00000570874 DNAH3Q8TD57 4116 aa2.3□□□□□ -2.04
SMG6-208ENST00000570874 VWFP04275 2813 aa2.3□□□□□ -2.04
SMG6-208ENST00000570874 IGLV10-54A0A075B6I4 117 aa2.3□□□□□ -2.04
SMG6-208ENST00000570874 TRGV4A0A0C4DH28 118 aa2.3□□□□□ -2.04
SMG6-208ENST00000570874 H0YGX0 51 aa2.3□□□□□ -2.04
SMG6-208ENST00000570874 H3BQ85 93 aa2.3□□□□□ -2.04
SMG6-208ENST00000570874 CHKB-CPT1BH3BT56 60 aa2.3□□□□□ -2.04
SMG6-208ENST00000570874 K7EIL1 84 aa2.3□□□□□ -2.04
SMG6-208ENST00000570874 NDUFA1O15239 70 aa2.3□□□□□ -2.04
SMG6-208ENST00000570874 HTN3P15516 51 aa2.3□□□□□ -2.04
SMG6-208ENST00000570874 MOBPQ13875 183 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms