RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	SLC25A20	O43772	301 aa		9.46	□□□□□ -0.9
CLN3-231	ENST00000568422	ERC2-IT1	O76042	136 aa		9.46	□□□□□ -0.9
CLN3-231	ENST00000568422	NDUFC2	O95298	119 aa		9.46	□□□□□ -0.9
CLN3-231	ENST00000568422		Q9BRP9	147 aa		9.46	□□□□□ -0.9
CLN3-231	ENST00000568422	HERVK_113	P61574	105 aa		9.45	□□□□□ -0.9
CLN3-231	ENST00000568422	JOSD1	Q15040	202 aa	Predicted RBP	9.45	□□□□□ -0.9
CLN3-231	ENST00000568422		Q8N377	158 aa		9.45	□□□□□ -0.9
CLN3-231	ENST00000568422	IGLV6-57	P01721	117 aa		9.44	□□□□□ -0.9
CLN3-231	ENST00000568422	S100A7L2	Q5SY68	101 aa		9.44	□□□□□ -0.9
CLN3-231	ENST00000568422	DPM2	O94777	84 aa		9.43	□□□□□ -0.9
CLN3-231	ENST00000568422	LGALS3	P17931	250 aa	Known RBP	9.43	□□□□□ -0.9
CLN3-231	ENST00000568422	HSPB8	Q9UJY1	196 aa		9.43	□□□□□ -0.9
CLN3-231	ENST00000568422	LINC01547	P58512	204 aa	Predicted RBP	9.42	□□□□□ -0.9
CLN3-231	ENST00000568422	C5orf52	A6NGY3	159 aa		9.41	□□□□□ -0.9
CLN3-231	ENST00000568422	CBY1	Q9Y3M2	126 aa		9.41	□□□□□ -0.9
CLN3-231	ENST00000568422	TRAV23DV6	A0A075B6W5	121 aa		9.4	□□□□□ -0.9
CLN3-231	ENST00000568422	IGKC	P01834	107 aa		9.4	□□□□□ -0.9
CLN3-231	ENST00000568422	HIST3H2BB	Q8N257	126 aa		9.39	□□□□□ -0.91
CLN3-231	ENST00000568422	KRTAP9-6	A0A140TA67	174 aa		9.38	□□□□□ -0.91
CLN3-231	ENST00000568422	ZNF73	O43830	326 aa	Predicted RBP	9.38	□□□□□ -0.91
CLN3-231	ENST00000568422	FABP4	P15090	132 aa		9.37	□□□□□ -0.91
CLN3-231	ENST00000568422	HINT1	P49773	126 aa	Predicted RBP	9.37	□□□□□ -0.91
CLN3-231	ENST00000568422	C9orf153	Q5TBE3	101 aa		9.37	□□□□□ -0.91
CLN3-231	ENST00000568422	PMCHL2	Q9BQD1	86 aa		9.37	□□□□□ -0.91
CLN3-231	ENST00000568422	SNRPE	P62304	92 aa	Known RBP	9.36	□□□□□ -0.91
CLN3-231	ENST00000568422	XP32	Q5T750	250 aa		9.36	□□□□□ -0.91
CLN3-231	ENST00000568422		A0A0J9YXY3	114 aa		9.35	□□□□□ -0.91
CLN3-231	ENST00000568422	S100A6	P06703	90 aa		9.35	□□□□□ -0.91
CLN3-231	ENST00000568422	KRTAP4-1	Q9BYQ7	146 aa		9.35	□□□□□ -0.91
CLN3-231	ENST00000568422	TMA7	Q9Y2S6	64 aa	Known RBP	9.35	□□□□□ -0.91
CLN3-231	ENST00000568422	ADAMTSL4-AS1	Q5T5F5	129 aa		9.34	□□□□□ -0.91
CLN3-231	ENST00000568422	SOSTDC1	Q6X4U4	206 aa		9.34	□□□□□ -0.91
CLN3-231	ENST00000568422	HIST1H2BL	Q99880	126 aa		9.34	□□□□□ -0.91
CLN3-231	ENST00000568422		E9PLD3	99 aa		9.33	□□□□□ -0.92
CLN3-231	ENST00000568422	SLC25A34	Q6PIV7	304 aa		9.33	□□□□□ -0.92
CLN3-231	ENST00000568422	EIF4EBP3	O60516	100 aa	Predicted RBP	9.32	□□□□□ -0.92
CLN3-231	ENST00000568422	NPC2	P61916	151 aa		9.32	□□□□□ -0.92
CLN3-231	ENST00000568422	ST20-AS1	Q8NBB2	130 aa		9.32	□□□□□ -0.92
CLN3-231	ENST00000568422	C3orf79	P0CE67	100 aa		9.3	□□□□□ -0.92
CLN3-231	ENST00000568422	SPRR1B	P22528	89 aa		9.3	□□□□□ -0.92
CLN3-231	ENST00000568422	LIMD2	Q9BT23	127 aa		9.3	□□□□□ -0.92
CLN3-231	ENST00000568422	SPANXC	Q9NY87	97 aa		9.3	□□□□□ -0.92
CLN3-231	ENST00000568422	DHRS4-AS1	Q9P1J3	65 aa		9.3	□□□□□ -0.92
CLN3-231	ENST00000568422	SYS1-DBNDD2	H3BUS1	97 aa		9.29	□□□□□ -0.92
CLN3-231	ENST00000568422	TIMM17B	O60830	172 aa		9.28	□□□□□ -0.92
CLN3-231	ENST00000568422	S100A2	P29034	98 aa		9.28	□□□□□ -0.92
CLN3-231	ENST00000568422	LINC00308	Q8TCZ7	52 aa		9.28	□□□□□ -0.92
CLN3-231	ENST00000568422	OR13C6P	Q8NH95	151 aa		9.27	□□□□□ -0.93
CLN3-231	ENST00000568422	LITAF	Q99732	161 aa		9.27	□□□□□ -0.93
CLN3-231	ENST00000568422	KRTDAP	P60985	99 aa		9.26	□□□□□ -0.93
CLN3-231	ENST00000568422	PET117	Q6UWS5	81 aa		9.26	□□□□□ -0.93
CLN3-231	ENST00000568422	SPANXD	Q9BXN6	97 aa		9.26	□□□□□ -0.93
CLN3-231	ENST00000568422	LAMTOR3	Q9UHA4	124 aa		9.26	□□□□□ -0.93
CLN3-231	ENST00000568422	LCE2D	Q5TA82	110 aa	Predicted RBP	9.25	□□□□□ -0.93
CLN3-231	ENST00000568422	LINC01545	Q5VT33	79 aa		9.25	□□□□□ -0.93
CLN3-231	ENST00000568422	LINC00518	Q8N0U6	118 aa		9.23	□□□□□ -0.93
CLN3-231	ENST00000568422	ELOF1	P60002	83 aa	Known RBP	9.22	□□□□□ -0.93
CLN3-231	ENST00000568422	CD164	Q04900	197 aa		9.22	□□□□□ -0.93
CLN3-231	ENST00000568422	HRCT1	Q6UXD1	115 aa		9.21	□□□□□ -0.94
CLN3-231	ENST00000568422	ZNF815P	A8K554	130 aa		9.2	□□□□□ -0.94
CLN3-231	ENST00000568422	COX7B	P24311	80 aa		9.2	□□□□□ -0.94
CLN3-231	ENST00000568422	TAL2	Q16559	108 aa		9.19	□□□□□ -0.94
CLN3-231	ENST00000568422	C6orf99	Q4VX62	202 aa		9.19	□□□□□ -0.94
CLN3-231	ENST00000568422	TRBV7-6	A0A0J9YX20	115 aa		9.18	□□□□□ -0.94
CLN3-231	ENST00000568422	TEX49	A0A1B0GTD5	131 aa		9.18	□□□□□ -0.94
CLN3-231	ENST00000568422	LCE2C	Q5TA81	110 aa		9.18	□□□□□ -0.94
CLN3-231	ENST00000568422	PRO1933	Q9H354	126 aa		9.18	□□□□□ -0.94
CLN3-231	ENST00000568422	PCOTH	Q58A44	107 aa		9.17	□□□□□ -0.94
CLN3-231	ENST00000568422	C20orf202	A1L168	122 aa		9.16	□□□□□ -0.94
CLN3-231	ENST00000568422	C9orf92	A6NGG3	77 aa		9.16	□□□□□ -0.94
CLN3-231	ENST00000568422	COPS9	Q8WXC6	57 aa		9.16	□□□□□ -0.94
CLN3-231	ENST00000568422	IGLV8-61	A0A075B6I0	122 aa		9.15	□□□□□ -0.94
CLN3-231	ENST00000568422		Q1RN00	199 aa		9.15	□□□□□ -0.94
CLN3-231	ENST00000568422		Q5XG85	94 aa		9.15	□□□□□ -0.94
CLN3-231	ENST00000568422	ATOH7	Q8N100	152 aa		9.15	□□□□□ -0.94
CLN3-231	ENST00000568422	DEFB105A	Q8NG35	78 aa		9.15	□□□□□ -0.94
CLN3-231	ENST00000568422		H7C2G1	150 aa		9.14	□□□□□ -0.95
CLN3-231	ENST00000568422	AKR1D1	P51857	326 aa		9.14	□□□□□ -0.95
CLN3-231	ENST00000568422		A0A1B0GWB2	263 aa		9.13	□□□□□ -0.95
CLN3-231	ENST00000568422	KRTAP19-2	Q3LHN2	52 aa		9.13	□□□□□ -0.95
CLN3-231	ENST00000568422	TTTY13	Q9BZ97	58 aa		9.13	□□□□□ -0.95
CLN3-231	ENST00000568422	SCGB1D4	Q6XE38	83 aa		9.12	□□□□□ -0.95
CLN3-231	ENST00000568422	FSIP2	Q5CZC0	6907 aa		9.12	□□□□□ -0.95
CLN3-231	ENST00000568422	SCGB1D1	O95968	90 aa		9.11	□□□□□ -0.95
CLN3-231	ENST00000568422	CFC1B	P0CG36	223 aa		9.11	□□□□□ -0.95
CLN3-231	ENST00000568422	PYY3	Q5JQD4	70 aa		9.11	□□□□□ -0.95
CLN3-231	ENST00000568422	SMIM29	Q86T20	159 aa		9.11	□□□□□ -0.95
CLN3-231	ENST00000568422	IGLV5-48	A0A075B6I7	105 aa		9.1	□□□□□ -0.95
CLN3-231	ENST00000568422	LOC105371267	A0A1B0GV96	52 aa		9.1	□□□□□ -0.95
CLN3-231	ENST00000568422	IFITM1	P13164	125 aa		9.1	□□□□□ -0.95
CLN3-231	ENST00000568422	MT1H	P80294	61 aa		9.1	□□□□□ -0.95
CLN3-231	ENST00000568422	ANKRD39	Q53RE8	183 aa		9.1	□□□□□ -0.95
CLN3-231	ENST00000568422		Q6ZVH6	145 aa		9.1	□□□□□ -0.95
CLN3-231	ENST00000568422		A4D1N5	150 aa		9.09	□□□□□ -0.95
CLN3-231	ENST00000568422		A6NDN8	102 aa		9.08	□□□□□ -0.96
CLN3-231	ENST00000568422	C1orf195	Q5TG92	126 aa		9.08	□□□□□ -0.96
CLN3-231	ENST00000568422	CRCT1	Q9UGL9	99 aa		9.08	□□□□□ -0.96
CLN3-231	ENST00000568422	NHP2	Q9NX24	153 aa	Known RBP	9.07	□□□□□ -0.96
CLN3-231	ENST00000568422	RPL37	P61927	97 aa	Known RBP	9.03	□□□□□ -0.96
CLN3-231	ENST00000568422	TRAV13-2	A0A0B4J235	113 aa		9.02	□□□□□ -0.97

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