RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SPRR4Q96PI1 79 aa8.78□□□□□ -1
VPS39-210ENST00000568357 C20orf202A1L168 122 aa8.77□□□□□ -1.01
VPS39-210ENST00000568357 S100A12P80511 92 aa8.77□□□□□ -1.01
VPS39-210ENST00000568357 ANKRD39Q53RE8 183 aa8.77□□□□□ -1.01
VPS39-210ENST00000568357 S100A7L2Q5SY68 101 aa8.77□□□□□ -1.01
VPS39-210ENST00000568357 C3orf22Q8N5N4 141 aa8.76□□□□□ -1.01
VPS39-210ENST00000568357 HIST3H2BBQ8N257 126 aa8.75□□□□□ -1.01
VPS39-210ENST00000568357 ERC2-IT1O76042 136 aa8.74□□□□□ -1.01
VPS39-210ENST00000568357 HIST1H2BLQ99880 126 aa8.74□□□□□ -1.01
VPS39-210ENST00000568357 PRR4Q16378 134 aa8.73□□□□□ -1.01
VPS39-210ENST00000568357 LINC00304Q8N9R0 145 aa8.73□□□□□ -1.01
VPS39-210ENST00000568357 Q9BRP9 147 aa8.73□□□□□ -1.01
VPS39-210ENST00000568357 SPANXCQ9NY87 97 aa8.73□□□□□ -1.01
VPS39-210ENST00000568357 ZNF706Q9Y5V0 76 aaPredicted RBP8.73□□□□□ -1.01
VPS39-210ENST00000568357 TRAV23DV6A0A075B6W5 121 aa8.72□□□□□ -1.01
VPS39-210ENST00000568357 Q6ZRX8 168 aa8.72□□□□□ -1.01
VPS39-210ENST00000568357 PCP2Q8IVA1 136 aa8.72□□□□□ -1.01
VPS39-210ENST00000568357 PPDPFQ9H3Y8 114 aa8.72□□□□□ -1.01
VPS39-210ENST00000568357 ZNF73O43830 326 aaPredicted RBP8.71□□□□□ -1.02
VPS39-210ENST00000568357 S100A2P29034 98 aa8.71□□□□□ -1.02
VPS39-210ENST00000568357 SCGB1D4Q6XE38 83 aa8.7□□□□□ -1.02
VPS39-210ENST00000568357 AKR1D1P51857 326 aa8.69□□□□□ -1.02
VPS39-210ENST00000568357 LINC00483Q53H64 154 aa8.69□□□□□ -1.02
VPS39-210ENST00000568357 GAGE2AQ6NT46 116 aa8.69□□□□□ -1.02
VPS39-210ENST00000568357 OR13C6PQ8NH95 151 aa8.69□□□□□ -1.02
VPS39-210ENST00000568357 SPANXDQ9BXN6 97 aa8.69□□□□□ -1.02
VPS39-210ENST00000568357 S100A6P06703 90 aa8.67□□□□□ -1.02
VPS39-210ENST00000568357 SNRPEP62304 92 aaKnown RBP8.67□□□□□ -1.02
VPS39-210ENST00000568357 LCE2AQ5TA79 106 aaPredicted RBP8.67□□□□□ -1.02
VPS39-210ENST00000568357 JOSD1Q15040 202 aaPredicted RBP8.66□□□□□ -1.02
VPS39-210ENST00000568357 C4orf48Q5BLP8 95 aa8.66□□□□□ -1.02
VPS39-210ENST00000568357 LINC00518Q8N0U6 118 aa8.66□□□□□ -1.02
VPS39-210ENST00000568357 RETNLBQ9BQ08 111 aa8.66□□□□□ -1.02
VPS39-210ENST00000568357 MUSTN1Q8IVN3 82 aa8.65□□□□□ -1.02
VPS39-210ENST00000568357 CBY1Q9Y3M2 126 aa8.65□□□□□ -1.02
VPS39-210ENST00000568357 IFITM1P13164 125 aa8.64□□□□□ -1.03
VPS39-210ENST00000568357 Q8NBF4 154 aa8.64□□□□□ -1.03
VPS39-210ENST00000568357 HINT1P49773 126 aaPredicted RBP8.63□□□□□ -1.03
VPS39-210ENST00000568357 CTAG1AP78358 180 aa8.63□□□□□ -1.03
VPS39-210ENST00000568357 SPAG11AQ6PDA7 123 aa8.63□□□□□ -1.03
VPS39-210ENST00000568357 Q6ZVH6 145 aa8.63□□□□□ -1.03
VPS39-210ENST00000568357 ST20-AS1Q8NBB2 130 aa8.63□□□□□ -1.03
VPS39-210ENST00000568357 A0A0U1RQV1 116 aa8.62□□□□□ -1.03
VPS39-210ENST00000568357 C5orf52A6NGY3 159 aa8.62□□□□□ -1.03
VPS39-210ENST00000568357 IGLV9-49A0A0B4J1Y8 123 aa8.61□□□□□ -1.03
VPS39-210ENST00000568357 COPS9Q8WXC6 57 aa8.61□□□□□ -1.03
VPS39-210ENST00000568357 HSBP1L1C9JCN9 74 aa8.6□□□□□ -1.03
VPS39-210ENST00000568357 MOBPQ13875 183 aa8.6□□□□□ -1.03
VPS39-210ENST00000568357 C6orf99Q4VX62 202 aa8.6□□□□□ -1.03
VPS39-210ENST00000568357 SCGB1D1O95968 90 aa8.59□□□□□ -1.03
VPS39-210ENST00000568357 A6NDN8 102 aa8.58□□□□□ -1.04
VPS39-210ENST00000568357 COX7BP24311 80 aa8.58□□□□□ -1.04
VPS39-210ENST00000568357 ELOF1P60002 83 aaKnown RBP8.58□□□□□ -1.04
VPS39-210ENST00000568357 SSBP3-AS1Q7Z2R9 100 aa8.58□□□□□ -1.04
VPS39-210ENST00000568357 DHRS4-AS1Q9P1J3 65 aa8.58□□□□□ -1.04
VPS39-210ENST00000568357 IGLV7-46A0A075B6I9 117 aa8.56□□□□□ -1.04
VPS39-210ENST00000568357 TRBV7-6A0A0J9YX20 115 aa8.55□□□□□ -1.04
VPS39-210ENST00000568357 SPINK1P00995 79 aa8.55□□□□□ -1.04
VPS39-210ENST00000568357 SPRR1BP22528 89 aa8.55□□□□□ -1.04
VPS39-210ENST00000568357 TRAV13-2A0A0B4J235 113 aa8.53□□□□□ -1.04
VPS39-210ENST00000568357 C9orf153Q5TBE3 101 aa8.53□□□□□ -1.04
VPS39-210ENST00000568357 A0A1B0GWB2 263 aa8.52□□□□□ -1.05
VPS39-210ENST00000568357 SMIM11BQ8TCY0 68 aa8.52□□□□□ -1.05
VPS39-210ENST00000568357 A4D1N5 150 aa8.51□□□□□ -1.05
VPS39-210ENST00000568357 TPRXLQ17RH7 258 aa8.51□□□□□ -1.05
VPS39-210ENST00000568357 DEFB105AQ8NG35 78 aa8.51□□□□□ -1.05
VPS39-210ENST00000568357 COX8AP10176 69 aa8.5□□□□□ -1.05
VPS39-210ENST00000568357 TAL2Q16559 108 aa8.49□□□□□ -1.05
VPS39-210ENST00000568357 RPS29P62273 56 aaKnown RBP8.48□□□□□ -1.05
VPS39-210ENST00000568357 SLC25A34Q6PIV7 304 aa8.48□□□□□ -1.05
VPS39-210ENST00000568357 FP248Q71RG6 208 aaPredicted RBP8.48□□□□□ -1.05
VPS39-210ENST00000568357 Q8N377 158 aa8.48□□□□□ -1.05
VPS39-210ENST00000568357 LAMTOR3Q9UHA4 124 aa8.48□□□□□ -1.05
VPS39-210ENST00000568357 FSIP2Q5CZC0 6907 aa8.47□□□□□ -1.05
VPS39-210ENST00000568357 TEX49A0A1B0GTD5 131 aa8.47□□□□□ -1.05
VPS39-210ENST00000568357 DLEU1O43261 78 aa8.47□□□□□ -1.05
VPS39-210ENST00000568357 LINC01547P58512 204 aaPredicted RBP8.47□□□□□ -1.05
VPS39-210ENST00000568357 C14orf144Q96I85 54 aa8.47□□□□□ -1.05
VPS39-210ENST00000568357 HIST1H4GQ99525 98 aa8.47□□□□□ -1.05
VPS39-210ENST00000568357 CDIP1Q9H305 208 aa8.47□□□□□ -1.05
VPS39-210ENST00000568357 Q1RN00 199 aa8.46□□□□□ -1.06
VPS39-210ENST00000568357 SMIM29Q86T20 159 aa8.46□□□□□ -1.06
VPS39-210ENST00000568357 PAM16Q9Y3D7 125 aa8.46□□□□□ -1.06
VPS39-210ENST00000568357 IGLV5-48A0A075B6I7 105 aa8.45□□□□□ -1.06
VPS39-210ENST00000568357 C12orf57Q99622 126 aa8.45□□□□□ -1.06
VPS39-210ENST00000568357 SLC25A20O43772 301 aa8.44□□□□□ -1.06
VPS39-210ENST00000568357 SPATA45Q537H7 98 aa8.44□□□□□ -1.06
VPS39-210ENST00000568357 KRTAP13-3Q3SY46 172 aa8.43□□□□□ -1.06
VPS39-210ENST00000568357 HRCT1Q6UXD1 115 aa8.43□□□□□ -1.06
VPS39-210ENST00000568357 CRCT1Q9UGL9 99 aa8.43□□□□□ -1.06
VPS39-210ENST00000568357 VAMP3Q15836 100 aa8.42□□□□□ -1.06
VPS39-210ENST00000568357 LINC00575Q6W349 94 aa8.42□□□□□ -1.06
VPS39-210ENST00000568357 MUC17Q685J3 4493 aa8.42□□□□□ -1.06
VPS39-210ENST00000568357 VAMP8Q9BV40 100 aa8.41□□□□□ -1.06
VPS39-210ENST00000568357 NHP2Q9NX24 153 aaKnown RBP8.41□□□□□ -1.06
VPS39-210ENST00000568357 HIGD1BQ9P298 99 aa8.4□□□□□ -1.06
VPS39-210ENST00000568357 A0A0G2JQZ4 141 aa8.39□□□□□ -1.07
VPS39-210ENST00000568357 C2orf91Q6ZV80 131 aa8.39□□□□□ -1.07
VPS39-210ENST00000568357 PRO1933Q9H354 126 aa8.39□□□□□ -1.07
VPS39-210ENST00000568357 CFC1BP0CG36 223 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms