RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 Q6JHZ5 121 aa13.06□□□□□ -0.32
CLN3-230ENST00000568076 UBE2DNLQ8IWF7 75 aa13.06□□□□□ -0.32
CLN3-230ENST00000568076 FAM236AA0A1B0GUQ0 79 aa13.05□□□□□ -0.32
CLN3-230ENST00000568076 FAM236BA0A1B0GV22 79 aa13.05□□□□□ -0.32
CLN3-230ENST00000568076 IGKV3D-7A0A0C4DH55 119 aa13.05□□□□□ -0.32
CLN3-230ENST00000568076 RPL37AP8A6NKH3 93 aa13.04□□□□□ -0.32
CLN3-230ENST00000568076 M0R2N4 97 aa13.04□□□□□ -0.32
CLN3-230ENST00000568076 LOC107984640A0A0U1RRK4 108 aa13.03□□□□□ -0.32
CLN3-230ENST00000568076 IGLV1-50A0A075B6I6 118 aa13.03□□□□□ -0.32
CLN3-230ENST00000568076 DSCR8Q96T75 97 aa13.01□□□□□ -0.33
CLN3-230ENST00000568076 PLECQ15149 4684 aaKnown RBP13.01□□□□□ -0.33
CLN3-230ENST00000568076 DNAH7Q8WXX0 4024 aa13.01□□□□□ -0.33
CLN3-230ENST00000568076 KRTAP4-16G5E9R7 235 aaPredicted RBP13□□□□□ -0.33
CLN3-230ENST00000568076 GHRHP01286 108 aa13□□□□□ -0.33
CLN3-230ENST00000568076 FAM19A5Q7Z5A7 132 aaPredicted RBP13□□□□□ -0.33
CLN3-230ENST00000568076 TRBV7-4A0A0J9YYF1 115 aa12.98□□□□□ -0.33
CLN3-230ENST00000568076 PRYO14603 147 aa12.98□□□□□ -0.33
CLN3-230ENST00000568076 PSCAO43653 123 aa12.98□□□□□ -0.33
CLN3-230ENST00000568076 SPRR1AP35321 89 aa12.98□□□□□ -0.33
CLN3-230ENST00000568076 MRPL55Q7Z7F7 128 aaKnown RBP12.98□□□□□ -0.33
CLN3-230ENST00000568076 TENM2Q9NT68 2774 aa12.97□□□□□ -0.33
CLN3-230ENST00000568076 CNBPP62633 177 aaKnown RBP12.97□□□□□ -0.33
CLN3-230ENST00000568076 B5MCH6 92 aa12.96□□□□□ -0.33
CLN3-230ENST00000568076 CCDC179H3BU77 68 aa12.96□□□□□ -0.33
CLN3-230ENST00000568076 PDE6GP18545 87 aa12.96□□□□□ -0.33
CLN3-230ENST00000568076 Q6ZRX8 168 aa12.96□□□□□ -0.33
CLN3-230ENST00000568076 Q9BRP9 147 aa12.96□□□□□ -0.34
CLN3-230ENST00000568076 A0A096LNI7 61 aa12.94□□□□□ -0.34
CLN3-230ENST00000568076 UBL5Q9BZL1 73 aa12.94□□□□□ -0.34
CLN3-230ENST00000568076 HIST1H4AP62805 103 aaKnown RBP12.94□□□□□ -0.34
CLN3-230ENST00000568076 A0A087WVE0 104 aa12.93□□□□□ -0.34
CLN3-230ENST00000568076 NUPR2A6NF83 97 aa12.92□□□□□ -0.34
CLN3-230ENST00000568076 LINC01547P58512 204 aaPredicted RBP12.92□□□□□ -0.34
CLN3-230ENST00000568076 Q8N377 158 aa12.92□□□□□ -0.34
CLN3-230ENST00000568076 DHRS4-AS1Q9P1J3 65 aa12.92□□□□□ -0.34
CLN3-230ENST00000568076 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.91□□□□□ -0.34
CLN3-230ENST00000568076 ETDCA0A1B0GVM5 59 aa12.91□□□□□ -0.34
CLN3-230ENST00000568076 C16orf90A8MZG2 172 aa12.91□□□□□ -0.34
CLN3-230ENST00000568076 ATP5EP2Q5VTU8 51 aa12.9□□□□□ -0.34
CLN3-230ENST00000568076 DEFB105AQ8NG35 78 aa12.9□□□□□ -0.34
CLN3-230ENST00000568076 IGKV2-24A0A0C4DH68 120 aa12.9□□□□□ -0.34
CLN3-230ENST00000568076 PRKDCP78527 4128 aaKnown RBP12.89□□□□□ -0.35
CLN3-230ENST00000568076 NBDYA0A0U1RRE5 68 aa12.89□□□□□ -0.35
CLN3-230ENST00000568076 A0A1W2PNN7 141 aa12.89□□□□□ -0.35
CLN3-230ENST00000568076 Q6ZVQ6 151 aa12.88□□□□□ -0.35
CLN3-230ENST00000568076 STARD9Q9P2P6 4700 aa12.88□□□□□ -0.35
CLN3-230ENST00000568076 C14orf177Q52M58 125 aa12.87□□□□□ -0.35
CLN3-230ENST00000568076 LRCOL1A6NCL2 159 aa12.86□□□□□ -0.35
CLN3-230ENST00000568076 ST20-AS1Q8NBB2 130 aa12.86□□□□□ -0.35
CLN3-230ENST00000568076 ERC2-IT1O76042 136 aa12.85□□□□□ -0.35
CLN3-230ENST00000568076 REG3GQ6UW15 175 aa12.85□□□□□ -0.35
CLN3-230ENST00000568076 FAM19A1Q7Z5A9 133 aa12.85□□□□□ -0.35
CLN3-230ENST00000568076 Q6ZRN7 208 aaPredicted RBP12.84□□□□□ -0.35
CLN3-230ENST00000568076 C3orf22Q8N5N4 141 aa12.84□□□□□ -0.35
CLN3-230ENST00000568076 MEGF8Q7Z7M0 2845 aa12.83□□□□□ -0.36
CLN3-230ENST00000568076 DNHD1Q96M86 4753 aa12.83□□□□□ -0.36
CLN3-230ENST00000568076 IGLV5-48A0A075B6I7 105 aa12.81□□□□□ -0.36
CLN3-230ENST00000568076 ATOX1O00244 68 aa12.81□□□□□ -0.36
CLN3-230ENST00000568076 CHTF8P0CG12 524 aa12.81□□□□□ -0.36
CLN3-230ENST00000568076 VPS13DQ5THJ4 4388 aa12.81□□□□□ -0.36
CLN3-230ENST00000568076 UBE2BP63146 152 aa12.8□□□□□ -0.36
CLN3-230ENST00000568076 HAMPP81172 84 aa12.8□□□□□ -0.36
CLN3-230ENST00000568076 C9orf163Q8N9P6 203 aa12.79□□□□□ -0.36
CLN3-230ENST00000568076 TNP2Q05952 138 aa12.78□□□□□ -0.36
CLN3-230ENST00000568076 KRTAP11-1Q8IUC1 163 aa12.76□□□□□ -0.37
CLN3-230ENST00000568076 CXCL6P80162 114 aa12.74□□□□□ -0.37
CLN3-230ENST00000568076 PRLHP81277 87 aa12.74□□□□□ -0.37
CLN3-230ENST00000568076 PHF5AQ7RTV0 110 aaKnown RBP12.74□□□□□ -0.37
CLN3-230ENST00000568076 UQCRQO14949 82 aa12.74□□□□□ -0.37
CLN3-230ENST00000568076 COX7CP15954 63 aa12.74□□□□□ -0.37
CLN3-230ENST00000568076 PANO1I0J062 215 aa12.7□□□□□ -0.38
CLN3-230ENST00000568076 SCXQ7RTU7 201 aa12.7□□□□□ -0.38
CLN3-230ENST00000568076 SMIM29Q86T20 159 aa12.7□□□□□ -0.38
CLN3-230ENST00000568076 A0A1W2PNM2 257 aa12.7□□□□□ -0.38
CLN3-230ENST00000568076 C3orf84H3BNL1 204 aa12.7□□□□□ -0.38
CLN3-230ENST00000568076 C1orf137Q5JT78 98 aa12.69□□□□□ -0.38
CLN3-230ENST00000568076 SS18L2Q9UHA2 77 aa12.69□□□□□ -0.38
CLN3-230ENST00000568076 SERP2Q8N6R1 65 aa12.68□□□□□ -0.38
CLN3-230ENST00000568076 C9orf153Q5TBE3 101 aa12.67□□□□□ -0.38
CLN3-230ENST00000568076 HIGD2AQ9BW72 106 aa12.66□□□□□ -0.38
CLN3-230ENST00000568076 NREPQ16612 68 aa12.65□□□□□ -0.38
CLN3-230ENST00000568076 PKIGQ9Y2B9 76 aa12.65□□□□□ -0.38
CLN3-230ENST00000568076 A0A087WTM6 91 aa12.63□□□□□ -0.39
CLN3-230ENST00000568076 FUSP35637 526 aaKnown RBP eCLIP12.63□□□□□ -0.39
CLN3-230ENST00000568076 Q8NBF4 154 aa12.63□□□□□ -0.39
CLN3-230ENST00000568076 LINC00474Q9P2X8 69 aa12.63□□□□□ -0.39
CLN3-230ENST00000568076 EPM2AB3EWF7 344 aa12.62□□□□□ -0.39
CLN3-230ENST00000568076 Q6ZR54 194 aa12.62□□□□□ -0.39
CLN3-230ENST00000568076 DNAH2Q9P225 4427 aa12.62□□□□□ -0.39
CLN3-230ENST00000568076 CRYGAP11844 174 aa12.61□□□□□ -0.39
CLN3-230ENST00000568076 KMT2AQ03164 3969 aa12.61□□□□□ -0.39
CLN3-230ENST00000568076 LINC00476Q8WZB0 136 aa12.61□□□□□ -0.39
CLN3-230ENST00000568076 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.61□□□□□ -0.39
CLN3-230ENST00000568076 A0A1B0GW54 56 aa12.6□□□□□ -0.39
CLN3-230ENST00000568076 SPRR4Q96PI1 79 aa12.6□□□□□ -0.39
CLN3-230ENST00000568076 H0Y9J4 135 aa12.6□□□□□ -0.39
CLN3-230ENST00000568076 Q8N9L7 120 aa12.59□□□□□ -0.39
CLN3-230ENST00000568076 SPACA4Q8TDM5 124 aa12.59□□□□□ -0.39
CLN3-230ENST00000568076 CYSTM1Q9H1C7 97 aa12.58□□□□□ -0.4
CLN3-230ENST00000568076 A0A0G2JQZ4 141 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 128.1 ms