RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 RPS29P62273 56 aaKnown RBP8.49□□□□□ -1.05
CLN3-222ENST00000566083 GAGE2AQ6NT46 116 aa8.49□□□□□ -1.05
CLN3-222ENST00000566083 SSBP3-AS1Q7Z2R9 100 aa8.49□□□□□ -1.05
CLN3-222ENST00000566083 NDUFC2O95298 119 aa8.48□□□□□ -1.05
CLN3-222ENST00000566083 LGALS3P17931 250 aaKnown RBP8.48□□□□□ -1.05
CLN3-222ENST00000566083 JOSD1Q15040 202 aaPredicted RBP8.48□□□□□ -1.05
CLN3-222ENST00000566083 DAND5Q8N907 189 aa8.48□□□□□ -1.05
CLN3-222ENST00000566083 CBY1Q9Y3M2 126 aa8.48□□□□□ -1.05
CLN3-222ENST00000566083 S100A7L2Q5SY68 101 aa8.47□□□□□ -1.05
CLN3-222ENST00000566083 LCE2AQ5TA79 106 aaPredicted RBP8.46□□□□□ -1.05
CLN3-222ENST00000566083 Q6ZRX8 168 aa8.46□□□□□ -1.05
CLN3-222ENST00000566083 IGKCP01834 107 aa8.46□□□□□ -1.06
CLN3-222ENST00000566083 TSPEAR-AS2P59090 65 aa8.46□□□□□ -1.06
CLN3-222ENST00000566083 IGLV6-57P01721 117 aa8.45□□□□□ -1.06
CLN3-222ENST00000566083 C3orf79P0CE67 100 aa8.44□□□□□ -1.06
CLN3-222ENST00000566083 KRTAP13-3Q3SY46 172 aa8.44□□□□□ -1.06
CLN3-222ENST00000566083 IGLV9-49A0A0B4J1Y8 123 aa8.43□□□□□ -1.06
CLN3-222ENST00000566083 SLC25A20O43772 301 aa8.43□□□□□ -1.06
CLN3-222ENST00000566083 HINT1P49773 126 aaPredicted RBP8.43□□□□□ -1.06
CLN3-222ENST00000566083 MOBPQ13875 183 aa8.43□□□□□ -1.06
CLN3-222ENST00000566083 TRAV23DV6A0A075B6W5 121 aa8.42□□□□□ -1.06
CLN3-222ENST00000566083 SMIM6P0DI80 62 aa8.42□□□□□ -1.06
CLN3-222ENST00000566083 KRTDAPP60985 99 aa8.42□□□□□ -1.06
CLN3-222ENST00000566083 PYY3Q5JQD4 70 aa8.42□□□□□ -1.06
CLN3-222ENST00000566083 Q9BRP9 147 aa8.42□□□□□ -1.06
CLN3-222ENST00000566083 SYS1-DBNDD2H3BUS1 97 aa8.41□□□□□ -1.06
CLN3-222ENST00000566083 ERC2-IT1O76042 136 aa8.41□□□□□ -1.06
CLN3-222ENST00000566083 ASB16-AS1Q495Z4 193 aa8.41□□□□□ -1.06
CLN3-222ENST00000566083 MUC17Q685J3 4493 aa8.4□□□□□ -1.06
CLN3-222ENST00000566083 ZNF73O43830 326 aaPredicted RBP8.4□□□□□ -1.06
CLN3-222ENST00000566083 SEC61BP60468 96 aaKnown RBP8.4□□□□□ -1.06
CLN3-222ENST00000566083 E9PLD3 99 aa8.39□□□□□ -1.07
CLN3-222ENST00000566083 LINC00518Q8N0U6 118 aa8.39□□□□□ -1.07
CLN3-222ENST00000566083 PMCHL2Q9BQD1 86 aa8.39□□□□□ -1.07
CLN3-222ENST00000566083 A0A0J9YXY3 114 aa8.38□□□□□ -1.07
CLN3-222ENST00000566083 PET117Q6UWS5 81 aa8.38□□□□□ -1.07
CLN3-222ENST00000566083 Q8N377 158 aa8.38□□□□□ -1.07
CLN3-222ENST00000566083 SLC25A34Q6PIV7 304 aa8.37□□□□□ -1.07
CLN3-222ENST00000566083 C9orf153Q5TBE3 101 aa8.37□□□□□ -1.07
CLN3-222ENST00000566083 LINC01545Q5VT33 79 aa8.37□□□□□ -1.07
CLN3-222ENST00000566083 C12orf57Q99622 126 aa8.37□□□□□ -1.07
CLN3-222ENST00000566083 KRTAP9-6A0A140TA67 174 aa8.36□□□□□ -1.07
CLN3-222ENST00000566083 SCGB1D1O95968 90 aa8.36□□□□□ -1.07
CLN3-222ENST00000566083 SPANXCQ9NY87 97 aa8.36□□□□□ -1.07
CLN3-222ENST00000566083 TIMM17BO60830 172 aa8.35□□□□□ -1.07
CLN3-222ENST00000566083 ADAMTSL4-AS1Q5T5F5 129 aa8.35□□□□□ -1.07
CLN3-222ENST00000566083 SOSTDC1Q6X4U4 206 aa8.35□□□□□ -1.07
CLN3-222ENST00000566083 NPC2P61916 151 aa8.34□□□□□ -1.07
CLN3-222ENST00000566083 DHRS4-AS1Q9P1J3 65 aa8.34□□□□□ -1.07
CLN3-222ENST00000566083 ATOH7Q8N100 152 aa8.32□□□□□ -1.08
CLN3-222ENST00000566083 OR13C6PQ8NH95 151 aa8.32□□□□□ -1.08
CLN3-222ENST00000566083 LINC00308Q8TCZ7 52 aa8.32□□□□□ -1.08
CLN3-222ENST00000566083 SPANXDQ9BXN6 97 aa8.32□□□□□ -1.08
CLN3-222ENST00000566083 C20orf202A1L168 122 aa8.31□□□□□ -1.08
CLN3-222ENST00000566083 LINC01547P58512 204 aaPredicted RBP8.31□□□□□ -1.08
CLN3-222ENST00000566083 LIMD2Q9BT23 127 aa8.31□□□□□ -1.08
CLN3-222ENST00000566083 EIF4EBP3O60516 100 aaPredicted RBP8.3□□□□□ -1.08
CLN3-222ENST00000566083 SPRR1BP22528 89 aa8.3□□□□□ -1.08
CLN3-222ENST00000566083 ST20-AS1Q8NBB2 130 aa8.29□□□□□ -1.08
CLN3-222ENST00000566083 LITAFQ99732 161 aa8.29□□□□□ -1.08
CLN3-222ENST00000566083 LAMTOR3Q9UHA4 124 aa8.29□□□□□ -1.08
CLN3-222ENST00000566083 XP32Q5T750 250 aa8.29□□□□□ -1.08
CLN3-222ENST00000566083 ZNF815PA8K554 130 aa8.28□□□□□ -1.08
CLN3-222ENST00000566083 COPS9Q8WXC6 57 aa8.28□□□□□ -1.08
CLN3-222ENST00000566083 COX7BP24311 80 aa8.26□□□□□ -1.09
CLN3-222ENST00000566083 VAMP8Q9BV40 100 aa8.26□□□□□ -1.09
CLN3-222ENST00000566083 ELOF1P60002 83 aaKnown RBP8.25□□□□□ -1.09
CLN3-222ENST00000566083 TRBV7-6A0A0J9YX20 115 aa8.24□□□□□ -1.09
CLN3-222ENST00000566083 CD164Q04900 197 aa8.24□□□□□ -1.09
CLN3-222ENST00000566083 PAM16Q9Y3D7 125 aa8.24□□□□□ -1.09
CLN3-222ENST00000566083 TAL2Q16559 108 aa8.23□□□□□ -1.09
CLN3-222ENST00000566083 C6orf99Q4VX62 202 aa8.23□□□□□ -1.09
CLN3-222ENST00000566083 ANKRD39Q53RE8 183 aa8.23□□□□□ -1.09
CLN3-222ENST00000566083 SPATA45Q537H7 98 aa8.22□□□□□ -1.09
CLN3-222ENST00000566083 SCGB1D4Q6XE38 83 aa8.22□□□□□ -1.09
CLN3-222ENST00000566083 Q6ZVH6 145 aa8.22□□□□□ -1.09
CLN3-222ENST00000566083 PRO1933Q9H354 126 aa8.22□□□□□ -1.09
CLN3-222ENST00000566083 TEX49A0A1B0GTD5 131 aa8.21□□□□□ -1.09
CLN3-222ENST00000566083 IFITM1P13164 125 aa8.21□□□□□ -1.09
CLN3-222ENST00000566083 A0A1B0GWB2 263 aa8.2□□□□□ -1.1
CLN3-222ENST00000566083 HSBP1L1C9JCN9 74 aa8.2□□□□□ -1.1
CLN3-222ENST00000566083 HRCT1Q6UXD1 115 aa8.2□□□□□ -1.1
CLN3-222ENST00000566083 KRTAP4-1Q9BYQ7 146 aa8.2□□□□□ -1.1
CLN3-222ENST00000566083 A4D1N5 150 aa8.19□□□□□ -1.1
CLN3-222ENST00000566083 TSTD3H0UI37 97 aa8.18□□□□□ -1.1
CLN3-222ENST00000566083 H7C2G1 150 aa8.18□□□□□ -1.1
CLN3-222ENST00000566083 Q5XG85 94 aa8.18□□□□□ -1.1
CLN3-222ENST00000566083 DEFB105AQ8NG35 78 aa8.18□□□□□ -1.1
CLN3-222ENST00000566083 TTTY13Q9BZ97 58 aa8.18□□□□□ -1.1
CLN3-222ENST00000566083 PCP4L1A6NKN8 68 aa8.17□□□□□ -1.1
CLN3-222ENST00000566083 Q1RN00 199 aa8.17□□□□□ -1.1
CLN3-222ENST00000566083 C14orf144Q96I85 54 aa8.17□□□□□ -1.1
CLN3-222ENST00000566083 NHP2Q9NX24 153 aaKnown RBP8.17□□□□□ -1.1
CLN3-222ENST00000566083 A6NDN8 102 aa8.16□□□□□ -1.1
CLN3-222ENST00000566083 PCP2Q8IVA1 136 aa8.16□□□□□ -1.1
CLN3-222ENST00000566083 IGLV5-48A0A075B6I7 105 aa8.14□□□□□ -1.11
CLN3-222ENST00000566083 TRAV13-2A0A0B4J235 113 aa8.14□□□□□ -1.11
CLN3-222ENST00000566083 COX8AP10176 69 aa8.13□□□□□ -1.11
CLN3-222ENST00000566083 UQCR10Q9UDW1 63 aa8.12□□□□□ -1.11
CLN3-222ENST00000566083 C9orf92A6NGG3 77 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms