RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 HIST1H2BHQ93079 126 aa12.81□□□□□ -0.36
CLN3-215ENST00000565236 HIST1H2BNQ99877 126 aa12.81□□□□□ -0.36
CLN3-215ENST00000565236 HIST1H2BMQ99879 126 aa12.81□□□□□ -0.36
CLN3-215ENST00000565236 SPINK1P00995 79 aa12.8□□□□□ -0.36
CLN3-215ENST00000565236 FP248Q71RG6 208 aaPredicted RBP12.8□□□□□ -0.36
CLN3-215ENST00000565236 TRAV23DV6A0A075B6W5 121 aa12.79□□□□□ -0.36
CLN3-215ENST00000565236 IGLV9-49A0A0B4J1Y8 123 aa12.79□□□□□ -0.36
CLN3-215ENST00000565236 EIF4EBP3O60516 100 aaPredicted RBP12.79□□□□□ -0.36
CLN3-215ENST00000565236 JOSD1Q15040 202 aaPredicted RBP12.79□□□□□ -0.36
CLN3-215ENST00000565236 MOBPQ13875 183 aa12.77□□□□□ -0.37
CLN3-215ENST00000565236 ZNF73O43830 326 aaPredicted RBP12.76□□□□□ -0.37
CLN3-215ENST00000565236 SSBP3-AS1Q7Z2R9 100 aa12.76□□□□□ -0.37
CLN3-215ENST00000565236 LINC01545Q5VT33 79 aa12.75□□□□□ -0.37
CLN3-215ENST00000565236 PET117Q6UWS5 81 aa12.75□□□□□ -0.37
CLN3-215ENST00000565236 CBY1Q9Y3M2 126 aa12.75□□□□□ -0.37
CLN3-215ENST00000565236 MUC17Q685J3 4493 aa12.73□□□□□ -0.37
CLN3-215ENST00000565236 HINT1P49773 126 aaPredicted RBP12.73□□□□□ -0.37
CLN3-215ENST00000565236 LINC00308Q8TCZ7 52 aa12.73□□□□□ -0.37
CLN3-215ENST00000565236 LITAFQ99732 161 aa12.72□□□□□ -0.37
CLN3-215ENST00000565236 SPANXCQ9NY87 97 aa12.72□□□□□ -0.37
CLN3-215ENST00000565236 TIMM17BO60830 172 aa12.71□□□□□ -0.37
CLN3-215ENST00000565236 OR13C6PQ8NH95 151 aa12.71□□□□□ -0.37
CLN3-215ENST00000565236 ZNF815PA8K554 130 aa12.7□□□□□ -0.38
CLN3-215ENST00000565236 FAT4Q6V0I7 4981 aa12.68□□□□□ -0.38
CLN3-215ENST00000565236 RPS29P62273 56 aaKnown RBP12.68□□□□□ -0.38
CLN3-215ENST00000565236 C3orf79P0CE67 100 aa12.67□□□□□ -0.38
CLN3-215ENST00000565236 KRTAP13-3Q3SY46 172 aa12.67□□□□□ -0.38
CLN3-215ENST00000565236 C9orf153Q5TBE3 101 aa12.67□□□□□ -0.38
CLN3-215ENST00000565236 ST20-AS1Q8NBB2 130 aa12.67□□□□□ -0.38
CLN3-215ENST00000565236 C5orf52A6NGY3 159 aa12.66□□□□□ -0.38
CLN3-215ENST00000565236 Q8N377 158 aa12.65□□□□□ -0.38
CLN3-215ENST00000565236 TTTY13Q9BZ97 58 aa12.65□□□□□ -0.38
CLN3-215ENST00000565236 SLC25A20O43772 301 aa12.64□□□□□ -0.39
CLN3-215ENST00000565236 KRTDAPP60985 99 aa12.64□□□□□ -0.39
CLN3-215ENST00000565236 SPANXDQ9BXN6 97 aa12.64□□□□□ -0.39
CLN3-215ENST00000565236 LINC00518Q8N0U6 118 aa12.63□□□□□ -0.39
CLN3-215ENST00000565236 DHRS4-AS1Q9P1J3 65 aa12.62□□□□□ -0.39
CLN3-215ENST00000565236 COA6Q5JTJ3 125 aaKnown RBP12.61□□□□□ -0.39
CLN3-215ENST00000565236 SCGB1D4Q6XE38 83 aa12.59□□□□□ -0.39
CLN3-215ENST00000565236 C20orf202A1L168 122 aa12.58□□□□□ -0.4
CLN3-215ENST00000565236 SLC25A34Q6PIV7 304 aa12.58□□□□□ -0.4
CLN3-215ENST00000565236 SPRR1BP22528 89 aa12.56□□□□□ -0.4
CLN3-215ENST00000565236 COX7BP24311 80 aa12.56□□□□□ -0.4
CLN3-215ENST00000565236 LCE2AQ5TA79 106 aaPredicted RBP12.56□□□□□ -0.4
CLN3-215ENST00000565236 ASB16-AS1Q495Z4 193 aa12.55□□□□□ -0.4
CLN3-215ENST00000565236 C6orf99Q4VX62 202 aa12.55□□□□□ -0.4
CLN3-215ENST00000565236 ELOF1P60002 83 aaKnown RBP12.54□□□□□ -0.4
CLN3-215ENST00000565236 COPS9Q8WXC6 57 aa12.54□□□□□ -0.4
CLN3-215ENST00000565236 ANKRD39Q53RE8 183 aa12.53□□□□□ -0.4
CLN3-215ENST00000565236 LAMTOR3Q9UHA4 124 aa12.53□□□□□ -0.4
CLN3-215ENST00000565236 IFITM1P13164 125 aa12.51□□□□□ -0.41
CLN3-215ENST00000565236 SEC61BP60468 96 aaKnown RBP12.51□□□□□ -0.41
CLN3-215ENST00000565236 TAL2Q16559 108 aa12.51□□□□□ -0.41
CLN3-215ENST00000565236 ATOH7Q8N100 152 aa12.51□□□□□ -0.41
CLN3-215ENST00000565236 AKR1D1P51857 326 aa12.49□□□□□ -0.41
CLN3-215ENST00000565236 HRCT1Q6UXD1 115 aa12.49□□□□□ -0.41
CLN3-215ENST00000565236 Q6ZVH6 145 aa12.49□□□□□ -0.41
CLN3-215ENST00000565236 DEFB105AQ8NG35 78 aa12.49□□□□□ -0.41
CLN3-215ENST00000565236 TRBV7-6A0A0J9YX20 115 aa12.48□□□□□ -0.41
CLN3-215ENST00000565236 A6NDN8 102 aa12.48□□□□□ -0.41
CLN3-215ENST00000565236 LIMD2Q9BT23 127 aa12.47□□□□□ -0.41
CLN3-215ENST00000565236 PCP2Q8IVA1 136 aa12.46□□□□□ -0.41
CLN3-215ENST00000565236 MUSTN1Q8IVN3 82 aa12.46□□□□□ -0.41
CLN3-215ENST00000565236 TEX49A0A1B0GTD5 131 aa12.45□□□□□ -0.42
CLN3-215ENST00000565236 Q1RN00 199 aa12.45□□□□□ -0.42
CLN3-215ENST00000565236 A0A1B0GWB2 263 aa12.44□□□□□ -0.42
CLN3-215ENST00000565236 XP32Q5T750 250 aa12.42□□□□□ -0.42
CLN3-215ENST00000565236 SNRPEP62304 92 aaKnown RBP12.41□□□□□ -0.42
CLN3-215ENST00000565236 PRO1933Q9H354 126 aa12.41□□□□□ -0.42
CLN3-215ENST00000565236 TRAV13-2A0A0B4J235 113 aa12.39□□□□□ -0.43
CLN3-215ENST00000565236 CD164Q04900 197 aa12.39□□□□□ -0.43
CLN3-215ENST00000565236 KRTAP4-1Q9BYQ7 146 aa12.39□□□□□ -0.43
CLN3-215ENST00000565236 A4D1N5 150 aa12.38□□□□□ -0.43
CLN3-215ENST00000565236 KRTAP9-2Q9BYQ4 174 aa12.37□□□□□ -0.43
CLN3-215ENST00000565236 SMIM29Q86T20 159 aa12.36□□□□□ -0.43
CLN3-215ENST00000565236 IGLV5-48A0A075B6I7 105 aa12.35□□□□□ -0.43
CLN3-215ENST00000565236 H7C2G1 150 aa12.35□□□□□ -0.43
CLN3-215ENST00000565236 SMIM11BQ8TCY0 68 aa12.35□□□□□ -0.43
CLN3-215ENST00000565236 NHP2Q9NX24 153 aaKnown RBP12.35□□□□□ -0.43
CLN3-215ENST00000565236 S100A2P29034 98 aa12.34□□□□□ -0.43
CLN3-215ENST00000565236 LINC01547P58512 204 aaPredicted RBP12.34□□□□□ -0.43
CLN3-215ENST00000565236 HIST3H2BBQ8N257 126 aa12.33□□□□□ -0.44
CLN3-215ENST00000565236 HSBP1L1C9JCN9 74 aa12.32□□□□□ -0.44
CLN3-215ENST00000565236 HIST1H2BLQ99880 126 aa12.32□□□□□ -0.44
CLN3-215ENST00000565236 C9orf92A6NGG3 77 aa12.3□□□□□ -0.44
CLN3-215ENST00000565236 VAMP3Q15836 100 aa12.29□□□□□ -0.44
CLN3-215ENST00000565236 Q5XG85 94 aa12.28□□□□□ -0.44
CLN3-215ENST00000565236 A0A0G2JQZ4 141 aa12.27□□□□□ -0.45
CLN3-215ENST00000565236 S100A6P06703 90 aa12.23□□□□□ -0.45
CLN3-215ENST00000565236 C1orf195Q5TG92 126 aa12.23□□□□□ -0.45
CLN3-215ENST00000565236 PCOTHQ58A44 107 aa12.22□□□□□ -0.45
CLN3-215ENST00000565236 LINC00575Q6W349 94 aa12.22□□□□□ -0.45
CLN3-215ENST00000565236 F8WEM9 126 aa12.21□□□□□ -0.45
CLN3-215ENST00000565236 S100A1P23297 94 aa12.2□□□□□ -0.46
CLN3-215ENST00000565236 IGLV8-61A0A075B6I0 122 aa12.18□□□□□ -0.46
CLN3-215ENST00000565236 hADV29S1A0JD25 119 aa12.18□□□□□ -0.46
CLN3-215ENST00000565236 TCL1BO95988 128 aa12.18□□□□□ -0.46
CLN3-215ENST00000565236 SCGB1D1O95968 90 aa12.17□□□□□ -0.46
CLN3-215ENST00000565236 Q6ZQY7 126 aa12.17□□□□□ -0.46
CLN3-215ENST00000565236 HIST1H4GQ99525 98 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms