RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 JOSD1Q15040 202 aaPredicted RBP2.29□□□□□ -2.04
VPS35-204ENST00000563884 ZNF726P1Q15940 193 aa2.29□□□□□ -2.04
VPS35-204ENST00000563884 PDZD11Q5EBL8 140 aa2.29□□□□□ -2.04
VPS35-204ENST00000563884 PCP2Q8IVA1 136 aa2.29□□□□□ -2.04
VPS35-204ENST00000563884 C20orf78Q9BR46 151 aa2.29□□□□□ -2.04
VPS35-204ENST00000563884 KCNQ1DNQ9H478 68 aa2.29□□□□□ -2.04
VPS35-204ENST00000563884 SND1-IT1Q9HBX3 110 aa2.29□□□□□ -2.04
VPS35-204ENST00000563884 PFN2P35080 140 aa2.28□□□□□ -2.04
VPS35-204ENST00000563884 KRTAP5-10Q6L8G5 202 aa2.28□□□□□ -2.04
VPS35-204ENST00000563884 ALKAL2Q6UX46 152 aa2.28□□□□□ -2.04
VPS35-204ENST00000563884 OBSCN-AS1Q96MR7 158 aa2.28□□□□□ -2.04
VPS35-204ENST00000563884 IMUPQ9GZP8 106 aa2.28□□□□□ -2.04
VPS35-204ENST00000563884 VCX2Q9H322 139 aa2.28□□□□□ -2.04
VPS35-204ENST00000563884 PRO1933Q9H354 126 aa2.28□□□□□ -2.04
VPS35-204ENST00000563884 LAMTOR3Q9UHA4 124 aa2.28□□□□□ -2.04
VPS35-204ENST00000563884 HMCN1Q96RW7 5635 aa2.27□□□□□ -2.05
VPS35-204ENST00000563884 RAB4AP20338 218 aa2.27□□□□□ -2.05
VPS35-204ENST00000563884 RAB5AP20339 215 aa2.27□□□□□ -2.05
VPS35-204ENST00000563884 Q6ZRX8 168 aa2.27□□□□□ -2.05
VPS35-204ENST00000563884 AMN1Q8IY45 258 aa2.27□□□□□ -2.05
VPS35-204ENST00000563884 CDKN2A-AS1Q9UH64 79 aa2.27□□□□□ -2.05
VPS35-204ENST00000563884 A0A0J9YXY3 114 aa2.26□□□□□ -2.05
VPS35-204ENST00000563884 ERC2-IT1O76042 136 aa2.26□□□□□ -2.05
VPS35-204ENST00000563884 ATP6V1G2O95670 118 aa2.26□□□□□ -2.05
VPS35-204ENST00000563884 CCL20P78556 96 aa2.26□□□□□ -2.05
VPS35-204ENST00000563884 SFTA2Q6UW10 78 aa2.26□□□□□ -2.05
VPS35-204ENST00000563884 KRTAP8-1Q8IUC2 63 aa2.26□□□□□ -2.05
VPS35-204ENST00000563884 SMIM2Q9BVW6 85 aa2.26□□□□□ -2.05
VPS35-204ENST00000563884 ERG28Q9UKR5 140 aa2.26□□□□□ -2.05
VPS35-204ENST00000563884 A0A1B0GUT8 65 aa2.25□□□□□ -2.05
VPS35-204ENST00000563884 LINC00862A6NCI5 91 aa2.25□□□□□ -2.05
VPS35-204ENST00000563884 LYRM1O43325 122 aa2.25□□□□□ -2.05
VPS35-204ENST00000563884 IGFL1Q6UW32 110 aa2.25□□□□□ -2.05
VPS35-204ENST00000563884 KCNRGQ8N5I3 272 aa2.25□□□□□ -2.05
VPS35-204ENST00000563884 ENKURQ8TC29 256 aa2.25□□□□□ -2.05
VPS35-204ENST00000563884 ZNF625Q96I27 306 aaPredicted RBP2.25□□□□□ -2.05
VPS35-204ENST00000563884 Q96NJ1 140 aa2.25□□□□□ -2.05
VPS35-204ENST00000563884 TRBV24-1A0A075B6N3 115 aa2.24□□□□□ -2.05
VPS35-204ENST00000563884 SMKR1H3BMG3 65 aa2.24□□□□□ -2.05
VPS35-204ENST00000563884 AMELXQ99217 191 aa2.24□□□□□ -2.05
VPS35-204ENST00000563884 Q9BRP9 147 aa2.24□□□□□ -2.05
VPS35-204ENST00000563884 MANBALQ9NQG1 85 aa2.24□□□□□ -2.05
VPS35-204ENST00000563884 A8MUU9 505 aa2.23□□□□□ -2.05
VPS35-204ENST00000563884 MT1BP07438 61 aa2.23□□□□□ -2.05
VPS35-204ENST00000563884 HRES1P13985 223 aa2.23□□□□□ -2.05
VPS35-204ENST00000563884 SPRR1BP22528 89 aa2.23□□□□□ -2.05
VPS35-204ENST00000563884 AKR1D1P51857 326 aa2.23□□□□□ -2.05
VPS35-204ENST00000563884 H2BFSP57053 126 aa2.23□□□□□ -2.05
VPS35-204ENST00000563884 RPL7L1Q6DKI1 246 aaKnown RBP2.23□□□□□ -2.05
VPS35-204ENST00000563884 Q8NDZ9 215 aa2.23□□□□□ -2.05
VPS35-204ENST00000563884 CYSLTR1Q9Y271 337 aa2.23□□□□□ -2.05
VPS35-204ENST00000563884 FAM240BA0A1B0GVZ2 78 aa2.22□□□□□ -2.05
VPS35-204ENST00000563884 H3BRM9 83 aa2.22□□□□□ -2.05
VPS35-204ENST00000563884 NCR3O14931 201 aa2.22□□□□□ -2.05
VPS35-204ENST00000563884 GATCO43716 136 aaKnown RBP2.22□□□□□ -2.05
VPS35-204ENST00000563884 PDE6DO43924 150 aa2.22□□□□□ -2.05
VPS35-204ENST00000563884 IL7P13232 177 aa2.22□□□□□ -2.05
VPS35-204ENST00000563884 CKS2P33552 79 aa2.22□□□□□ -2.05
VPS35-204ENST00000563884 NDUFA6P56556 154 aa2.22□□□□□ -2.05
VPS35-204ENST00000563884 ST20-AS1Q8NBB2 130 aa2.22□□□□□ -2.05
VPS35-204ENST00000563884 SFT2D1Q8WV19 159 aa2.22□□□□□ -2.05
VPS35-204ENST00000563884 TRBV10-3A0A0K0K1G6 114 aa2.21□□□□□ -2.06
VPS35-204ENST00000563884 LOC389332A0A1B0GUA5 103 aa2.21□□□□□ -2.06
VPS35-204ENST00000563884 GIPP09681 153 aaPredicted RBP2.21□□□□□ -2.06
VPS35-204ENST00000563884 A0A1B0GV50 99 aa2.2□□□□□ -2.06
VPS35-204ENST00000563884 TINCRA0A1B0GVN0 87 aa2.2□□□□□ -2.06
VPS35-204ENST00000563884 HMSDA8MTL9 139 aa2.2□□□□□ -2.06
VPS35-204ENST00000563884 HIGD1CA8MV81 97 aa2.2□□□□□ -2.06
VPS35-204ENST00000563884 SSNA1O43805 119 aa2.2□□□□□ -2.06
VPS35-204ENST00000563884 SPINK8P0C7L1 97 aa2.2□□□□□ -2.06
VPS35-204ENST00000563884 G0S2P27469 103 aa2.2□□□□□ -2.06
VPS35-204ENST00000563884 HINT1P49773 126 aaPredicted RBP2.2□□□□□ -2.06
VPS35-204ENST00000563884 MRPL51Q4U2R6 128 aaKnown RBP2.2□□□□□ -2.06
VPS35-204ENST00000563884 FA2HQ7L5A8 372 aa2.2□□□□□ -2.06
VPS35-204ENST00000563884 BOD1L2Q8IYS8 172 aa2.2□□□□□ -2.06
VPS35-204ENST00000563884 CBY1Q9Y3M2 126 aa2.2□□□□□ -2.06
VPS35-204ENST00000563884 AHNAKQ09666 5890 aaKnown RBP2.19□□□□□ -2.06
VPS35-204ENST00000563884 UMAD1C9J7I0 102 aa2.19□□□□□ -2.06
VPS35-204ENST00000563884 TEX46H3BTG2 121 aa2.19□□□□□ -2.06
VPS35-204ENST00000563884 PPBPP02775 128 aa2.19□□□□□ -2.06
VPS35-204ENST00000563884 DDTP30046 118 aa2.19□□□□□ -2.06
VPS35-204ENST00000563884 LINC00158P58513 81 aa2.19□□□□□ -2.06
VPS35-204ENST00000563884 PMVKQ15126 192 aa2.19□□□□□ -2.06
VPS35-204ENST00000563884 KRTAP19-8Q3LI54 63 aa2.19□□□□□ -2.06
VPS35-204ENST00000563884 Q5BKY6 102 aa2.19□□□□□ -2.06
VPS35-204ENST00000563884 FAM104BQ5XKR9 115 aa2.19□□□□□ -2.06
VPS35-204ENST00000563884 FAM213BQ8TBF2 198 aa2.19□□□□□ -2.06
VPS35-204ENST00000563884 MBD3L1Q8WWY6 194 aa2.19□□□□□ -2.06
VPS35-204ENST00000563884 A0A1B0GW15 77 aa2.18□□□□□ -2.06
VPS35-204ENST00000563884 A0A1B0GWB2 263 aa2.18□□□□□ -2.06
VPS35-204ENST00000563884 PLA2G10O15496 165 aa2.18□□□□□ -2.06
VPS35-204ENST00000563884 SNAPINO95295 136 aa2.18□□□□□ -2.06
VPS35-204ENST00000563884 S100A8P05109 93 aa2.18□□□□□ -2.06
VPS35-204ENST00000563884 HERVK_113P61574 105 aa2.18□□□□□ -2.06
VPS35-204ENST00000563884 ORMDL2Q53FV1 153 aa2.18□□□□□ -2.06
VPS35-204ENST00000563884 TMEM136Q6ZRR5 245 aa2.18□□□□□ -2.06
VPS35-204ENST00000563884 GNG13Q9P2W3 67 aa2.18□□□□□ -2.06
VPS35-204ENST00000563884 FAM236AA0A1B0GUQ0 79 aa2.17□□□□□ -2.06
VPS35-204ENST00000563884 FAM236BA0A1B0GV22 79 aa2.17□□□□□ -2.06
VPS35-204ENST00000563884 D6R8Y8 96 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms