RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 RPL18AQ02543 176 aaKnown RBP7.25□□□□□ -1.25
USP3-218ENST00000560202 Q6JHZ5 121 aa7.25□□□□□ -1.25
USP3-218ENST00000560202 FAM19A5Q7Z5A7 132 aaPredicted RBP7.25□□□□□ -1.25
USP3-218ENST00000560202 XAGE1AQ9HD64 81 aa7.25□□□□□ -1.25
USP3-218ENST00000560202 TNP2Q05952 138 aa7.25□□□□□ -1.25
USP3-218ENST00000560202 SERP2Q8N6R1 65 aa7.25□□□□□ -1.25
USP3-218ENST00000560202 SMCR5Q8TEV8 140 aa7.25□□□□□ -1.25
USP3-218ENST00000560202 TRAV13-2A0A0B4J235 113 aa7.24□□□□□ -1.25
USP3-218ENST00000560202 LOC107984640A0A0U1RRK4 108 aa7.24□□□□□ -1.25
USP3-218ENST00000560202 C9orf163Q8N9P6 203 aa7.24□□□□□ -1.25
USP3-218ENST00000560202 RPL28P46779 137 aaKnown RBP7.23□□□□□ -1.25
USP3-218ENST00000560202 S100A7L2Q5SY68 101 aa7.23□□□□□ -1.25
USP3-218ENST00000560202 FRAS1Q86XX4 4008 aa7.23□□□□□ -1.25
USP3-218ENST00000560202 LCE2BO14633 110 aa7.22□□□□□ -1.25
USP3-218ENST00000560202 NDUFC2O95298 119 aa7.22□□□□□ -1.25
USP3-218ENST00000560202 DNAL4O96015 105 aa7.22□□□□□ -1.25
USP3-218ENST00000560202 ATP5EP2Q5VTU8 51 aa7.22□□□□□ -1.25
USP3-218ENST00000560202 IGKV2-28A0A075B6P5 120 aa7.22□□□□□ -1.25
USP3-218ENST00000560202 H0YGX0 51 aa7.22□□□□□ -1.25
USP3-218ENST00000560202 IGKV2D-28P01615 120 aa7.22□□□□□ -1.25
USP3-218ENST00000560202 C9orf129Q5T035 196 aaKnown RBP7.22□□□□□ -1.25
USP3-218ENST00000560202 Q8NDZ9 215 aa7.22□□□□□ -1.25
USP3-218ENST00000560202 PRR3P79522 188 aaKnown RBP7.21□□□□□ -1.26
USP3-218ENST00000560202 OBSCN-AS1Q96MR7 158 aa7.21□□□□□ -1.26
USP3-218ENST00000560202 RYR2Q92736 4967 aa7.21□□□□□ -1.26
USP3-218ENST00000560202 DNAH11Q96DT5 4516 aa7.21□□□□□ -1.26
USP3-218ENST00000560202 FAT2Q9NYQ8 4349 aa7.2□□□□□ -1.26
USP3-218ENST00000560202 KMT2CQ8NEZ4 4911 aaKnown RBP7.2□□□□□ -1.26
USP3-218ENST00000560202 A0A096LNI7 61 aa7.19□□□□□ -1.26
USP3-218ENST00000560202 C16orf90A8MZG2 172 aa7.19□□□□□ -1.26
USP3-218ENST00000560202 BCE1O60756 84 aa7.19□□□□□ -1.26
USP3-218ENST00000560202 FUSP35637 526 aaKnown RBP eCLIP7.19□□□□□ -1.26
USP3-218ENST00000560202 LINC00337Q8N6G1 96 aa7.19□□□□□ -1.26
USP3-218ENST00000560202 DPH3Q96FX2 82 aa7.19□□□□□ -1.26
USP3-218ENST00000560202 PKIGQ9Y2B9 76 aa7.19□□□□□ -1.26
USP3-218ENST00000560202 IGLV5-52A0A0A0MRZ9 124 aa7.19□□□□□ -1.26
USP3-218ENST00000560202 NCR3O14931 201 aa7.19□□□□□ -1.26
USP3-218ENST00000560202 VPREB1P12018 145 aa7.19□□□□□ -1.26
USP3-218ENST00000560202 IGKV2-24A0A0C4DH68 120 aa7.18□□□□□ -1.26
USP3-218ENST00000560202 PLA2G2DQ9UNK4 145 aa7.18□□□□□ -1.26
USP3-218ENST00000560202 HECTD4Q9Y4D8 3996 aa7.17□□□□□ -1.26
USP3-218ENST00000560202 hADV29S1A0JD25 119 aa7.17□□□□□ -1.26
USP3-218ENST00000560202 SERTAD4-AS1Q5TG53 156 aa7.17□□□□□ -1.26
USP3-218ENST00000560202 C22orf24Q9Y442 160 aa7.17□□□□□ -1.26
USP3-218ENST00000560202 FAM168BA1KXE4 195 aa7.16□□□□□ -1.26
USP3-218ENST00000560202 TRBV10-3A0A0K0K1G6 114 aa7.16□□□□□ -1.26
USP3-218ENST00000560202 CHTF8P0CG12 524 aa7.16□□□□□ -1.26
USP3-218ENST00000560202 KRTAP10-2P60368 255 aa7.16□□□□□ -1.26
USP3-218ENST00000560202 LINC00336Q6ZUF6 198 aa7.16□□□□□ -1.26
USP3-218ENST00000560202 M0R378 163 aa7.15□□□□□ -1.27
USP3-218ENST00000560202 KRTAP7-1Q8IUC3 87 aa7.15□□□□□ -1.27
USP3-218ENST00000560202 LINC00474Q9P2X8 69 aa7.15□□□□□ -1.27
USP3-218ENST00000560202 IGLV5-37A0A075B6J1 123 aa7.14□□□□□ -1.27
USP3-218ENST00000560202 NKAPP1Q8N9T2 125 aa7.14□□□□□ -1.27
USP3-218ENST00000560202 PKD1P98161 4303 aa7.14□□□□□ -1.27
USP3-218ENST00000560202 DNAH5Q8TE73 4624 aa7.13□□□□□ -1.27
USP3-218ENST00000560202 A0A1W2PNN7 141 aa7.13□□□□□ -1.27
USP3-218ENST00000560202 JMJD7-PLA2G4BH0Y9G9 81 aa7.12□□□□□ -1.27
USP3-218ENST00000560202 PANO1I0J062 215 aa7.12□□□□□ -1.27
USP3-218ENST00000560202 IGLV6-57P01721 117 aa7.12□□□□□ -1.27
USP3-218ENST00000560202 FAM218AQ96MZ4 157 aa7.12□□□□□ -1.27
USP3-218ENST00000560202 SMIM11BQ8TCY0 68 aa7.12□□□□□ -1.27
USP3-218ENST00000560202 SPACA4Q8TDM5 124 aa7.12□□□□□ -1.27
USP3-218ENST00000560202 C7orf33Q8WU49 177 aa7.12□□□□□ -1.27
USP3-218ENST00000560202 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.12□□□□□ -1.27
USP3-218ENST00000560202 CCKP06307 115 aa7.1□□□□□ -1.27
USP3-218ENST00000560202 MRPL55Q7Z7F7 128 aaKnown RBP7.1□□□□□ -1.27
USP3-218ENST00000560202 LINC00167Q96N53 147 aa7.09□□□□□ -1.27
USP3-218ENST00000560202 LINC00846Q9NV44 126 aa7.09□□□□□ -1.27
USP3-218ENST00000560202 ORMDL1Q9P0S3 153 aa7.09□□□□□ -1.27
USP3-218ENST00000560202 RYR3Q15413 4870 aa7.08□□□□□ -1.28
USP3-218ENST00000560202 TRAV23DV6A0A075B6W5 121 aa7.08□□□□□ -1.28
USP3-218ENST00000560202 EPM2AB3EWF7 344 aa7.08□□□□□ -1.28
USP3-218ENST00000560202 C14orf132Q9NPU4 83 aa7.08□□□□□ -1.28
USP3-218ENST00000560202 SERP1Q9Y6X1 66 aa7.08□□□□□ -1.28
USP3-218ENST00000560202 DNAH8Q96JB1 4490 aa7.08□□□□□ -1.28
USP3-218ENST00000560202 IGLV1-50A0A075B6I6 118 aa7.07□□□□□ -1.28
USP3-218ENST00000560202 A0A087WYN8 130 aa7.07□□□□□ -1.28
USP3-218ENST00000560202 RPL37AP8A6NKH3 93 aa7.07□□□□□ -1.28
USP3-218ENST00000560202 Q5XG85 94 aa7.07□□□□□ -1.28
USP3-218ENST00000560202 IGKV3D-7A0A0C4DH55 119 aa7.06□□□□□ -1.28
USP3-218ENST00000560202 A0A1B0GVY2 172 aa7.06□□□□□ -1.28
USP3-218ENST00000560202 KRTAP10-1P60331 282 aa7.06□□□□□ -1.28
USP3-218ENST00000560202 C6orf99Q4VX62 202 aa7.06□□□□□ -1.28
USP3-218ENST00000560202 KCNQ1DNQ9H478 68 aa7.06□□□□□ -1.28
USP3-218ENST00000560202 H3BQ85 93 aa7.06□□□□□ -1.28
USP3-218ENST00000560202 TMEM256-PLSCR3K7ERE1 68 aa7.06□□□□□ -1.28
USP3-218ENST00000560202 ZNF73O43830 326 aaPredicted RBP7.06□□□□□ -1.28
USP3-218ENST00000560202 PHF5AQ7RTV0 110 aaKnown RBP7.06□□□□□ -1.28
USP3-218ENST00000560202 ATP5EP56381 51 aaPredicted RBP7.05□□□□□ -1.28
USP3-218ENST00000560202 DSCR8Q96T75 97 aa7.05□□□□□ -1.28
USP3-218ENST00000560202 PLAC8Q9NZF1 115 aa7.05□□□□□ -1.28
USP3-218ENST00000560202 LOC100996750A0A140TA64 210 aa7.04□□□□□ -1.28
USP3-218ENST00000560202 FAM236DA0A1B0GTK5 79 aa7.04□□□□□ -1.28
USP3-218ENST00000560202 GHRHP01286 108 aa7.04□□□□□ -1.28
USP3-218ENST00000560202 FAM236CP0DP71 79 aa7.04□□□□□ -1.28
USP3-218ENST00000560202 DIRC1Q969H9 104 aa7.04□□□□□ -1.28
USP3-218ENST00000560202 KRTAP4-6Q9BYQ5 205 aa7.04□□□□□ -1.28
USP3-218ENST00000560202 UBL5Q9BZL1 73 aa7.04□□□□□ -1.28
USP3-218ENST00000560202 CYSTM1Q9H1C7 97 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms