RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 A6NJY4 79 aa6.17□□□□□ -1.42
USP3-216ENST00000559873 HINT1P49773 126 aaPredicted RBP6.17□□□□□ -1.42
USP3-216ENST00000559873 C2orf91Q6ZV80 131 aa6.17□□□□□ -1.42
USP3-216ENST00000559873 PCLOQ9Y6V0 5065 aa6.17□□□□□ -1.42
USP3-216ENST00000559873 LOC105371267A0A1B0GV96 52 aa6.16□□□□□ -1.42
USP3-216ENST00000559873 A4D1N5 150 aa6.16□□□□□ -1.42
USP3-216ENST00000559873 H0Y9J4 135 aa6.16□□□□□ -1.42
USP3-216ENST00000559873 SPRR1AP35321 89 aa6.16□□□□□ -1.42
USP3-216ENST00000559873 ZNF73O43830 326 aaPredicted RBP6.15□□□□□ -1.42
USP3-216ENST00000559873 PRLHP81277 87 aa6.15□□□□□ -1.42
USP3-216ENST00000559873 HSD52Q0P140 79 aa6.15□□□□□ -1.42
USP3-216ENST00000559873 TSTD3H0UI37 97 aa6.13□□□□□ -1.43
USP3-216ENST00000559873 KRTAP13-1Q8IUC0 172 aa6.13□□□□□ -1.43
USP3-216ENST00000559873 CEND1Q8N111 149 aa6.13□□□□□ -1.43
USP3-216ENST00000559873 RAB37Q96AX2 223 aa6.13□□□□□ -1.43
USP3-216ENST00000559873 PKHD1L1Q86WI1 4243 aa6.13□□□□□ -1.43
USP3-216ENST00000559873 KRTAP4-16G5E9R7 235 aaPredicted RBP6.12□□□□□ -1.43
USP3-216ENST00000559873 OXTP01178 125 aa6.12□□□□□ -1.43
USP3-216ENST00000559873 Q6ZRX8 168 aa6.12□□□□□ -1.43
USP3-216ENST00000559873 C12orf57Q99622 126 aa6.12□□□□□ -1.43
USP3-216ENST00000559873 HIGD2AQ9BW72 106 aa6.12□□□□□ -1.43
USP3-216ENST00000559873 ZNF706Q9Y5V0 76 aaPredicted RBP6.12□□□□□ -1.43
USP3-216ENST00000559873 MYCBP2O75592 4640 aa6.11□□□□□ -1.43
USP3-216ENST00000559873 A0A0B4J2C4 111 aa6.11□□□□□ -1.43
USP3-216ENST00000559873 B5MCH6 92 aa6.11□□□□□ -1.43
USP3-216ENST00000559873 RPL13AP40429 203 aaKnown RBP6.11□□□□□ -1.43
USP3-216ENST00000559873 PRO1933Q9H354 126 aa6.11□□□□□ -1.43
USP3-216ENST00000559873 DMBT1Q9UGM3 2413 aaPredicted RBP6.11□□□□□ -1.43
USP3-216ENST00000559873 TRBV7-6A0A0J9YX20 115 aa6.1□□□□□ -1.43
USP3-216ENST00000559873 A0A1B0GWB2 263 aa6.1□□□□□ -1.43
USP3-216ENST00000559873 COX7BP24311 80 aa6.1□□□□□ -1.43
USP3-216ENST00000559873 C6orf99Q4VX62 202 aa6.1□□□□□ -1.43
USP3-216ENST00000559873 KRTAP29-1A8MX34 341 aaPredicted RBP6.09□□□□□ -1.43
USP3-216ENST00000559873 ELOF1P60002 83 aaKnown RBP6.09□□□□□ -1.43
USP3-216ENST00000559873 VAMP3Q15836 100 aa6.09□□□□□ -1.43
USP3-216ENST00000559873 NHP2Q9NX24 153 aaKnown RBP6.09□□□□□ -1.43
USP3-216ENST00000559873 DHRS4-AS1Q9P1J3 65 aa6.09□□□□□ -1.43
USP3-216ENST00000559873 J3QL48 77 aa6.08□□□□□ -1.44
USP3-216ENST00000559873 M0R143 59 aa6.08□□□□□ -1.44
USP3-216ENST00000559873 FXYD2P54710 66 aa6.08□□□□□ -1.44
USP3-216ENST00000559873 Q1RN00 199 aa6.08□□□□□ -1.44
USP3-216ENST00000559873 CFC1BP0CG36 223 aa6.07□□□□□ -1.44
USP3-216ENST00000559873 CFC1P0CG37 223 aa6.07□□□□□ -1.44
USP3-216ENST00000559873 BVES-AS1Q5T3Y7 98 aa6.07□□□□□ -1.44
USP3-216ENST00000559873 SMIM11BQ8TCY0 68 aa6.07□□□□□ -1.44
USP3-216ENST00000559873 SMCR5Q8TEV8 140 aa6.07□□□□□ -1.44
USP3-216ENST00000559873 LINC01600Q96MT4 127 aa6.07□□□□□ -1.44
USP3-216ENST00000559873 PRO1854Q9UHT4 67 aa6.07□□□□□ -1.44
USP3-216ENST00000559873 H7C2G1 150 aa6.06□□□□□ -1.44
USP3-216ENST00000559873 SLC25A20O43772 301 aa6.06□□□□□ -1.44
USP3-216ENST00000559873 FAM229BQ4G0N7 80 aa6.06□□□□□ -1.44
USP3-216ENST00000559873 SPRR4Q96PI1 79 aa6.05□□□□□ -1.44
USP3-216ENST00000559873 Q9BRP9 147 aa6.05□□□□□ -1.44
USP3-216ENST00000559873 FAT3Q8TDW7 4589 aa6.05□□□□□ -1.44
USP3-216ENST00000559873 SNCGO76070 127 aa6.04□□□□□ -1.44
USP3-216ENST00000559873 KRTAP1-4P0C5Y4 121 aa6.04□□□□□ -1.44
USP3-216ENST00000559873 CRYGAP11844 174 aa6.04□□□□□ -1.44
USP3-216ENST00000559873 CTAG1AP78358 180 aa6.04□□□□□ -1.44
USP3-216ENST00000559873 LRP1Q07954 4544 aaKnown RBP6.04□□□□□ -1.44
USP3-216ENST00000559873 GAGE2AQ6NT46 116 aa6.02□□□□□ -1.45
USP3-216ENST00000559873 H0YGX0 51 aa6.01□□□□□ -1.45
USP3-216ENST00000559873 K7ERJ3 54 aa6.01□□□□□ -1.45
USP3-216ENST00000559873 ERC2-IT1O76042 136 aa6.01□□□□□ -1.45
USP3-216ENST00000559873 COX6CP09669 75 aa6.01□□□□□ -1.45
USP3-216ENST00000559873 PRR26Q8N8Z3 221 aa6.01□□□□□ -1.45
USP3-216ENST00000559873 PSMB2P49721 201 aa6□□□□□ -1.45
USP3-216ENST00000559873 LINC00483Q53H64 154 aa6□□□□□ -1.45
USP3-216ENST00000559873 hADV29S1A0JD25 119 aa5.99□□□□□ -1.45
USP3-216ENST00000559873 LINC00575Q6W349 94 aa5.99□□□□□ -1.45
USP3-216ENST00000559873 TYMSOSQ8TAI1 123 aa5.99□□□□□ -1.45
USP3-216ENST00000559873 A0A087X002 238 aa5.98□□□□□ -1.45
USP3-216ENST00000559873 TSPAN13O95857 204 aa5.98□□□□□ -1.45
USP3-216ENST00000559873 GHRHP01286 108 aa5.98□□□□□ -1.45
USP3-216ENST00000559873 MT1HL1P0DM35 61 aa5.98□□□□□ -1.45
USP3-216ENST00000559873 TNXBP22105 4242 aa5.98□□□□□ -1.45
USP3-216ENST00000559873 TEX49A0A1B0GTD5 131 aa5.97□□□□□ -1.45
USP3-216ENST00000559873 A0A1B0GX51 115 aa5.97□□□□□ -1.45
USP3-216ENST00000559873 TRIAP1O43715 76 aa5.97□□□□□ -1.45
USP3-216ENST00000559873 SPRR1BP22528 89 aa5.97□□□□□ -1.45
USP3-216ENST00000559873 KRTAP10-8P60410 259 aa5.97□□□□□ -1.45
USP3-216ENST00000559873 BATFQ16520 125 aa5.97□□□□□ -1.45
USP3-216ENST00000559873 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.97□□□□□ -1.45
USP3-216ENST00000559873 ST20-AS1Q8NBB2 130 aa5.97□□□□□ -1.45
USP3-216ENST00000559873 ANAPC11Q9NYG5 84 aa5.97□□□□□ -1.45
USP3-216ENST00000559873 LAMTOR3Q9UHA4 124 aa5.97□□□□□ -1.45
USP3-216ENST00000559873 IGLV5-48A0A075B6I7 105 aa5.96□□□□□ -1.46
USP3-216ENST00000559873 OCIAD2Q56VL3 154 aa5.96□□□□□ -1.46
USP3-216ENST00000559873 DEFB105AQ8NG35 78 aa5.96□□□□□ -1.46
USP3-216ENST00000559873 DNAL4O96015 105 aa5.95□□□□□ -1.46
USP3-216ENST00000559873 C9orf153Q5TBE3 101 aa5.95□□□□□ -1.46
USP3-216ENST00000559873 LYRM7Q5U5X0 104 aa5.95□□□□□ -1.46
USP3-216ENST00000559873 Q6ZQY7 126 aa5.95□□□□□ -1.46
USP3-216ENST00000559873 PPDPFLQ8WWR9 84 aa5.95□□□□□ -1.46
USP3-216ENST00000559873 IGLV9-49A0A0B4J1Y8 123 aa5.94□□□□□ -1.46
USP3-216ENST00000559873 F8WEM9 126 aa5.94□□□□□ -1.46
USP3-216ENST00000559873 SCGB1C2P0DMR2 95 aa5.94□□□□□ -1.46
USP3-216ENST00000559873 KRTAP13-2Q52LG2 175 aa5.94□□□□□ -1.46
USP3-216ENST00000559873 Q8NBF4 154 aa5.94□□□□□ -1.46
USP3-216ENST00000559873 MOBPQ13875 183 aa5.93□□□□□ -1.46
USP3-216ENST00000559873 SSBP3-AS1Q7Z2R9 100 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 6.3 ms