RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 KRTAP13-3Q3SY46 172 aa5.19□□□□□ -1.58
HDDC3-204ENST00000559834 LINC01545Q5VT33 79 aa5.19□□□□□ -1.58
HDDC3-204ENST00000559834 DAND5Q8N907 189 aa5.19□□□□□ -1.58
HDDC3-204ENST00000559834 FAT4Q6V0I7 4981 aa5.19□□□□□ -1.58
HDDC3-204ENST00000559834 ETDCA0A1B0GVM5 59 aa5.18□□□□□ -1.58
HDDC3-204ENST00000559834 HSBP1L1C9JCN9 74 aa5.18□□□□□ -1.58
HDDC3-204ENST00000559834 BOD1L2Q8IYS8 172 aa5.18□□□□□ -1.58
HDDC3-204ENST00000559834 PMCHL2Q9BQD1 86 aa5.18□□□□□ -1.58
HDDC3-204ENST00000559834 KCNQ1DNQ9H478 68 aa5.18□□□□□ -1.58
HDDC3-204ENST00000559834 CHTOPQ9Y3Y2 248 aaKnown RBP5.18□□□□□ -1.58
HDDC3-204ENST00000559834 SPRR1AP35321 89 aa5.17□□□□□ -1.58
HDDC3-204ENST00000559834 HERV-K104P63124 156 aa5.17□□□□□ -1.58
HDDC3-204ENST00000559834 MEIG1Q5JSS6 88 aa5.17□□□□□ -1.58
HDDC3-204ENST00000559834 SSBP3-AS1Q7Z2R9 100 aa5.17□□□□□ -1.58
HDDC3-204ENST00000559834 TMEM223A0PJW6 202 aa5.16□□□□□ -1.58
HDDC3-204ENST00000559834 SMIM13P0DJ93 91 aa5.16□□□□□ -1.58
HDDC3-204ENST00000559834 HINT1P49773 126 aaPredicted RBP5.16□□□□□ -1.58
HDDC3-204ENST00000559834 RPS29P62273 56 aaKnown RBP5.16□□□□□ -1.58
HDDC3-204ENST00000559834 LINC00483Q53H64 154 aa5.16□□□□□ -1.58
HDDC3-204ENST00000559834 GAGE2AQ6NT46 116 aa5.16□□□□□ -1.58
HDDC3-204ENST00000559834 IFI27L1Q96BM0 104 aa5.16□□□□□ -1.58
HDDC3-204ENST00000559834 TRAV12-1A0A0B4J245 112 aa5.15□□□□□ -1.59
HDDC3-204ENST00000559834 NCR3O14931 201 aa5.15□□□□□ -1.59
HDDC3-204ENST00000559834 SLC25A20O43772 301 aa5.15□□□□□ -1.59
HDDC3-204ENST00000559834 ANKRD39Q53RE8 183 aa5.15□□□□□ -1.59
HDDC3-204ENST00000559834 COL5A1-AS1Q5SY13 56 aa5.15□□□□□ -1.59
HDDC3-204ENST00000559834 SLC25A34Q6PIV7 304 aa5.15□□□□□ -1.59
HDDC3-204ENST00000559834 MIR7-3HGQ8N6C7 128 aa5.15□□□□□ -1.59
HDDC3-204ENST00000559834 IGLV9-49A0A0B4J1Y8 123 aa5.14□□□□□ -1.59
HDDC3-204ENST00000559834 TRBV10-3A0A0K0K1G6 114 aa5.14□□□□□ -1.59
HDDC3-204ENST00000559834 MYMXA0A1B0GTQ4 84 aa5.14□□□□□ -1.59
HDDC3-204ENST00000559834 KRTAP4-16G5E9R7 235 aaPredicted RBP5.14□□□□□ -1.59
HDDC3-204ENST00000559834 COX8AP10176 69 aa5.13□□□□□ -1.59
HDDC3-204ENST00000559834 MOBPQ13875 183 aa5.13□□□□□ -1.59
HDDC3-204ENST00000559834 LCE2DQ5TA82 110 aaPredicted RBP5.13□□□□□ -1.59
HDDC3-204ENST00000559834 C2orf91Q6ZV80 131 aa5.13□□□□□ -1.59
HDDC3-204ENST00000559834 Q8N377 158 aa5.13□□□□□ -1.59
HDDC3-204ENST00000559834 TRBV10-2A0A0K0K1G8 114 aa5.12□□□□□ -1.59
HDDC3-204ENST00000559834 B5MCH6 92 aa5.12□□□□□ -1.59
HDDC3-204ENST00000559834 DLEU1O43261 78 aa5.12□□□□□ -1.59
HDDC3-204ENST00000559834 LOC107984156A0A0G2JMH3 177 aa5.11□□□□□ -1.59
HDDC3-204ENST00000559834 BVES-AS1Q5T3Y7 98 aa5.11□□□□□ -1.59
HDDC3-204ENST00000559834 ARL17AQ8IVW1 177 aa5.11□□□□□ -1.59
HDDC3-204ENST00000559834 KRTAP4-1Q9BYQ7 146 aa5.11□□□□□ -1.59
HDDC3-204ENST00000559834 ERC2-IT1O76042 136 aa5.1□□□□□ -1.59
HDDC3-204ENST00000559834 IGKCP01834 107 aa5.1□□□□□ -1.59
HDDC3-204ENST00000559834 XP32Q5T750 250 aa5.1□□□□□ -1.59
HDDC3-204ENST00000559834 MUC17Q685J3 4493 aa5.1□□□□□ -1.59
HDDC3-204ENST00000559834 Q6ZRX8 168 aa5.1□□□□□ -1.59
HDDC3-204ENST00000559834 Q6ZVH6 145 aa5.1□□□□□ -1.59
HDDC3-204ENST00000559834 DPM2O94777 84 aa5.09□□□□□ -1.59
HDDC3-204ENST00000559834 NMUP48645 174 aa5.09□□□□□ -1.59
HDDC3-204ENST00000559834 S100A7L2Q5SY68 101 aa5.09□□□□□ -1.59
HDDC3-204ENST00000559834 LEPROTO15243 131 aa5.08□□□□□ -1.6
HDDC3-204ENST00000559834 C9orf153Q5TBE3 101 aa5.08□□□□□ -1.6
HDDC3-204ENST00000559834 PCP2Q8IVA1 136 aa5.08□□□□□ -1.6
HDDC3-204ENST00000559834 Q9BRP9 147 aa5.08□□□□□ -1.6
HDDC3-204ENST00000559834 SPANXB1Q9NS25 103 aaPredicted RBP5.08□□□□□ -1.6
HDDC3-204ENST00000559834 TAX1BP3O14907 124 aa5.07□□□□□ -1.6
HDDC3-204ENST00000559834 NDUFC2O95298 119 aa5.07□□□□□ -1.6
HDDC3-204ENST00000559834 HSD52Q0P140 79 aa5.07□□□□□ -1.6
HDDC3-204ENST00000559834 CRCT1Q9UGL9 99 aa5.07□□□□□ -1.6
HDDC3-204ENST00000559834 CBY1Q9Y3M2 126 aa5.07□□□□□ -1.6
HDDC3-204ENST00000559834 IGLV6-57P01721 117 aa5.06□□□□□ -1.6
HDDC3-204ENST00000559834 HERVK_113P61574 105 aa5.06□□□□□ -1.6
HDDC3-204ENST00000559834 TTTY13Q9BZ97 58 aa5.06□□□□□ -1.6
HDDC3-204ENST00000559834 TRAV23DV6A0A075B6W5 121 aa5.05□□□□□ -1.6
HDDC3-204ENST00000559834 J3QQQ9 107 aa5.05□□□□□ -1.6
HDDC3-204ENST00000559834 ZNF73O43830 326 aaPredicted RBP5.05□□□□□ -1.6
HDDC3-204ENST00000559834 LGALS3P17931 250 aaKnown RBP5.05□□□□□ -1.6
HDDC3-204ENST00000559834 PLNP26678 52 aa5.05□□□□□ -1.6
HDDC3-204ENST00000559834 LIMD2Q9BT23 127 aa5.04□□□□□ -1.6
HDDC3-204ENST00000559834 HIGD1BQ9P298 99 aa5.04□□□□□ -1.6
HDDC3-204ENST00000559834 A6NDN8 102 aa5.03□□□□□ -1.6
HDDC3-204ENST00000559834 CFC1BP0CG36 223 aa5.03□□□□□ -1.6
HDDC3-204ENST00000559834 TSPEAR-AS2P59090 65 aa5.03□□□□□ -1.6
HDDC3-204ENST00000559834 VAMP3Q15836 100 aa5.03□□□□□ -1.6
HDDC3-204ENST00000559834 IGLV8-61A0A075B6I0 122 aa5.02□□□□□ -1.61
HDDC3-204ENST00000559834 UBE2V1Q13404 147 aa5.02□□□□□ -1.61
HDDC3-204ENST00000559834 PCOTHQ58A44 107 aa5.02□□□□□ -1.61
HDDC3-204ENST00000559834 LCE2CQ5TA81 110 aa5.02□□□□□ -1.61
HDDC3-204ENST00000559834 ST20-AS1Q8NBB2 130 aa5.02□□□□□ -1.61
HDDC3-204ENST00000559834 LAMTOR3Q9UHA4 124 aa5.02□□□□□ -1.61
HDDC3-204ENST00000559834 E9PLD3 99 aa5.01□□□□□ -1.61
HDDC3-204ENST00000559834 FXYD2P54710 66 aa5.01□□□□□ -1.61
HDDC3-204ENST00000559834 HRCT1Q6UXD1 115 aa5.01□□□□□ -1.61
HDDC3-204ENST00000559834 DHRS4-AS1Q9P1J3 65 aa5.01□□□□□ -1.61
HDDC3-204ENST00000559834 FSIP2Q5CZC0 6907 aa5.01□□□□□ -1.61
HDDC3-204ENST00000559834 C9orf118A6NHY6 69 aa5□□□□□ -1.61
HDDC3-204ENST00000559834 SPRR1BP22528 89 aa5□□□□□ -1.61
HDDC3-204ENST00000559834 TAL2Q16559 108 aa5□□□□□ -1.61
HDDC3-204ENST00000559834 CEND1Q8N111 149 aa5□□□□□ -1.61
HDDC3-204ENST00000559834 OR13C6PQ8NH95 151 aa5□□□□□ -1.61
HDDC3-204ENST00000559834 NAA38Q9BRA0 125 aaKnown RBP5□□□□□ -1.61
HDDC3-204ENST00000559834 A0A0J9YXY3 114 aa4.99□□□□□ -1.61
HDDC3-204ENST00000559834 C9orf92A6NGG3 77 aa4.99□□□□□ -1.61
HDDC3-204ENST00000559834 H3BUT2 72 aa4.99□□□□□ -1.61
HDDC3-204ENST00000559834 NPC2P61916 151 aa4.99□□□□□ -1.61
HDDC3-204ENST00000559834 ADAMTSL4-AS1Q5T5F5 129 aa4.99□□□□□ -1.61
HDDC3-204ENST00000559834 SOSTDC1Q6X4U4 206 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms