RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 B5MCH6 92 aa10.89□□□□□ -0.67
LDLR-206ENST00000557958 CCDC179H3BU77 68 aa10.89□□□□□ -0.67
LDLR-206ENST00000557958 GHRHP01286 108 aa10.89□□□□□ -0.67
LDLR-206ENST00000557958 SMCR5Q8TEV8 140 aa10.89□□□□□ -0.67
LDLR-206ENST00000557958 ELOF1P60002 83 aaKnown RBP10.88□□□□□ -0.67
LDLR-206ENST00000557958 DNAH1Q9P2D7 4330 aa10.88□□□□□ -0.67
LDLR-206ENST00000557958 SERTAD4-AS1Q5TG53 156 aa10.87□□□□□ -0.67
LDLR-206ENST00000557958 KCNQ1DNQ9H478 68 aa10.87□□□□□ -0.67
LDLR-206ENST00000557958 C7orf33Q8WU49 177 aa10.86□□□□□ -0.67
LDLR-206ENST00000557958 OBSCN-AS1Q96MR7 158 aa10.85□□□□□ -0.67
LDLR-206ENST00000557958 C16orf90A8MZG2 172 aa10.85□□□□□ -0.67
LDLR-206ENST00000557958 SS18L2Q9UHA2 77 aa10.85□□□□□ -0.67
LDLR-206ENST00000557958 JMJD7-PLA2G4BH0Y9G9 81 aa10.84□□□□□ -0.67
LDLR-206ENST00000557958 FAM236AA0A1B0GUQ0 79 aa10.83□□□□□ -0.68
LDLR-206ENST00000557958 FAM236BA0A1B0GV22 79 aa10.83□□□□□ -0.68
LDLR-206ENST00000557958 PRYO14603 147 aa10.83□□□□□ -0.68
LDLR-206ENST00000557958 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.83□□□□□ -0.68
LDLR-206ENST00000557958 Q6ZR54 194 aa10.83□□□□□ -0.68
LDLR-206ENST00000557958 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.82□□□□□ -0.68
LDLR-206ENST00000557958 GAGE2AQ6NT46 116 aa10.82□□□□□ -0.68
LDLR-206ENST00000557958 MRPL55Q7Z7F7 128 aaKnown RBP10.82□□□□□ -0.68
LDLR-206ENST00000557958 FAM168BA1KXE4 195 aa10.81□□□□□ -0.68
LDLR-206ENST00000557958 LRCOL1A6NCL2 159 aa10.81□□□□□ -0.68
LDLR-206ENST00000557958 Q6ZQY7 126 aa10.81□□□□□ -0.68
LDLR-206ENST00000557958 Q6ZRN7 208 aaPredicted RBP10.81□□□□□ -0.68
LDLR-206ENST00000557958 FAM19A5Q7Z5A7 132 aaPredicted RBP10.81□□□□□ -0.68
LDLR-206ENST00000557958 VPS13DQ5THJ4 4388 aa10.81□□□□□ -0.68
LDLR-206ENST00000557958 C1orf134Q5TEV5 83 aa10.81□□□□□ -0.68
LDLR-206ENST00000557958 IGLV1-50A0A075B6I6 118 aa10.8□□□□□ -0.68
LDLR-206ENST00000557958 LINC00528Q8N1L1 170 aa10.8□□□□□ -0.68
LDLR-206ENST00000557958 A0A096LNI7 61 aa10.78□□□□□ -0.68
LDLR-206ENST00000557958 C14orf132Q9NPU4 83 aa10.78□□□□□ -0.68
LDLR-206ENST00000557958 IGKV2-24A0A0C4DH68 120 aa10.77□□□□□ -0.69
LDLR-206ENST00000557958 C9orf163Q8N9P6 203 aa10.77□□□□□ -0.69
LDLR-206ENST00000557958 LINC00474Q9P2X8 69 aa10.77□□□□□ -0.69
LDLR-206ENST00000557958 RPL37AP8A6NKH3 93 aa10.76□□□□□ -0.69
LDLR-206ENST00000557958 ETDCA0A1B0GVM5 59 aa10.76□□□□□ -0.69
LDLR-206ENST00000557958 DHRS4-AS1Q9P1J3 65 aa10.76□□□□□ -0.69
LDLR-206ENST00000557958 LAMTOR3Q9UHA4 124 aa10.76□□□□□ -0.69
LDLR-206ENST00000557958 KMT2AQ03164 3969 aa10.76□□□□□ -0.69
LDLR-206ENST00000557958 HIST1H4AP62805 103 aaKnown RBP10.75□□□□□ -0.69
LDLR-206ENST00000557958 Q6JHZ5 121 aa10.75□□□□□ -0.69
LDLR-206ENST00000557958 KRTAP7-1Q8IUC3 87 aa10.75□□□□□ -0.69
LDLR-206ENST00000557958 DNAH10Q8IVF4 4471 aa10.75□□□□□ -0.69
LDLR-206ENST00000557958 SPRR1AP35321 89 aa10.74□□□□□ -0.69
LDLR-206ENST00000557958 Q6ZRX8 168 aa10.74□□□□□ -0.69
LDLR-206ENST00000557958 RBM3P98179 157 aaKnown RBP10.72□□□□□ -0.69
LDLR-206ENST00000557958 UQCRQO14949 82 aa10.72□□□□□ -0.69
LDLR-206ENST00000557958 C3orf22Q8N5N4 141 aa10.72□□□□□ -0.69
LDLR-206ENST00000557958 REG3GQ6UW15 175 aa10.71□□□□□ -0.69
LDLR-206ENST00000557958 SVIPQ8NHG7 77 aa10.71□□□□□ -0.69
LDLR-206ENST00000557958 A0A087WTM6 91 aa10.7□□□□□ -0.7
LDLR-206ENST00000557958 KRTAP4-16G5E9R7 235 aaPredicted RBP10.7□□□□□ -0.7
LDLR-206ENST00000557958 CCKP06307 115 aa10.7□□□□□ -0.7
LDLR-206ENST00000557958 ATOX1O00244 68 aa10.7□□□□□ -0.7
LDLR-206ENST00000557958 PDE6GP18545 87 aa10.7□□□□□ -0.7
LDLR-206ENST00000557958 FUSP35637 526 aaKnown RBP eCLIP10.7□□□□□ -0.7
LDLR-206ENST00000557958 LCE6AA0A183 80 aa10.69□□□□□ -0.7
LDLR-206ENST00000557958 LINC00846Q9NV44 126 aa10.69□□□□□ -0.7
LDLR-206ENST00000557958 A0A1W2PNN7 141 aa10.68□□□□□ -0.7
LDLR-206ENST00000557958 DSCR8Q96T75 97 aa10.68□□□□□ -0.7
LDLR-206ENST00000557958 ALMS1Q8TCU4 4167 aa10.67□□□□□ -0.7
LDLR-206ENST00000557958 LOC110117498A0A087WWA1 95 aa10.67□□□□□ -0.7
LDLR-206ENST00000557958 TNP2Q05952 138 aa10.67□□□□□ -0.7
LDLR-206ENST00000557958 COX7CP15954 63 aa10.66□□□□□ -0.7
LDLR-206ENST00000557958 C9orf153Q5TBE3 101 aa10.66□□□□□ -0.7
LDLR-206ENST00000557958 RTL8CO15255 209 aa10.65□□□□□ -0.7
LDLR-206ENST00000557958 CHTF8P0CG12 524 aa10.65□□□□□ -0.7
LDLR-206ENST00000557958 ATP5EP2Q5VTU8 51 aa10.65□□□□□ -0.7
LDLR-206ENST00000557958 UBE2BP63146 152 aa10.64□□□□□ -0.71
LDLR-206ENST00000557958 HYDINQ4G0P3 5121 aa10.64□□□□□ -0.71
LDLR-206ENST00000557958 Q9BRP9 147 aa10.64□□□□□ -0.71
LDLR-206ENST00000557958 Q6ZQT0 140 aa10.63□□□□□ -0.71
LDLR-206ENST00000557958 DPH3Q96FX2 82 aa10.63□□□□□ -0.71
LDLR-206ENST00000557958 IGKV3D-7A0A0C4DH55 119 aa10.61□□□□□ -0.71
LDLR-206ENST00000557958 CRYGAP11844 174 aa10.61□□□□□ -0.71
LDLR-206ENST00000557958 FAM19A1Q7Z5A9 133 aa10.6□□□□□ -0.71
LDLR-206ENST00000557958 DEFB105AQ8NG35 78 aa10.59□□□□□ -0.71
LDLR-206ENST00000557958 SPACA4Q8TDM5 124 aa10.59□□□□□ -0.71
LDLR-206ENST00000557958 DNAH2Q9P225 4427 aa10.59□□□□□ -0.71
LDLR-206ENST00000557958 TRBV7-4A0A0J9YYF1 115 aa10.59□□□□□ -0.71
LDLR-206ENST00000557958 PHF5AQ7RTV0 110 aaKnown RBP10.59□□□□□ -0.71
LDLR-206ENST00000557958 SMIM20Q8N5G0 67 aa10.59□□□□□ -0.71
LDLR-206ENST00000557958 IGLV5-52A0A0A0MRZ9 124 aa10.58□□□□□ -0.72
LDLR-206ENST00000557958 IGLV5-48A0A075B6I7 105 aa10.57□□□□□ -0.72
LDLR-206ENST00000557958 Q8N377 158 aa10.57□□□□□ -0.72
LDLR-206ENST00000557958 UBL5Q9BZL1 73 aa10.56□□□□□ -0.72
LDLR-206ENST00000557958 DNAH6Q9C0G6 4158 aa10.56□□□□□ -0.72
LDLR-206ENST00000557958 H0Y9J4 135 aa10.55□□□□□ -0.72
LDLR-206ENST00000557958 SERP2Q8N6R1 65 aa10.55□□□□□ -0.72
LDLR-206ENST00000557958 LINC01547P58512 204 aaPredicted RBP10.55□□□□□ -0.72
LDLR-206ENST00000557958 EPM2AB3EWF7 344 aa10.53□□□□□ -0.72
LDLR-206ENST00000557958 KRTAP10-2P60368 255 aa10.53□□□□□ -0.72
LDLR-206ENST00000557958 PRLHP81277 87 aa10.53□□□□□ -0.72
LDLR-206ENST00000557958 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.53□□□□□ -0.72
LDLR-206ENST00000557958 A0A087WVE0 104 aa10.53□□□□□ -0.72
LDLR-206ENST00000557958 PANO1I0J062 215 aa10.53□□□□□ -0.72
LDLR-206ENST00000557958 ERC2-IT1O76042 136 aa10.53□□□□□ -0.72
LDLR-206ENST00000557958 ST20-AS1Q8NBB2 130 aa10.52□□□□□ -0.73
LDLR-206ENST00000557958 HIGD2AQ9BW72 106 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms