RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 A0A087WVE0 104 aa8.37□□□□□ -1.07
SHMT2-229ENST00000557348 ERC2-IT1O76042 136 aa8.37□□□□□ -1.07
SHMT2-229ENST00000557348 HIGD2BQ4VC39 106 aa8.37□□□□□ -1.07
SHMT2-229ENST00000557348 C9orf129Q5T035 196 aaKnown RBP8.37□□□□□ -1.07
SHMT2-229ENST00000557348 CYSTM1Q9H1C7 97 aa8.37□□□□□ -1.07
SHMT2-229ENST00000557348 PRO0628Q9UI54 55 aa8.37□□□□□ -1.07
SHMT2-229ENST00000557348 SYCNQ0VAF6 134 aa8.37□□□□□ -1.07
SHMT2-229ENST00000557348 RBM3P98179 157 aaKnown RBP8.36□□□□□ -1.07
SHMT2-229ENST00000557348 TGP01266 2768 aa8.35□□□□□ -1.07
SHMT2-229ENST00000557348 Q6ZRU5 148 aa8.35□□□□□ -1.07
SHMT2-229ENST00000557348 H7BZZ5 65 aa8.34□□□□□ -1.07
SHMT2-229ENST00000557348 Q6ZQT0 140 aa8.34□□□□□ -1.07
SHMT2-229ENST00000557348 PRKDCP78527 4128 aaKnown RBP8.34□□□□□ -1.07
SHMT2-229ENST00000557348 OXTP01178 125 aa8.34□□□□□ -1.08
SHMT2-229ENST00000557348 TLX1NBP0CAT3 122 aa8.34□□□□□ -1.08
SHMT2-229ENST00000557348 C20orf197Q8N268 126 aa8.33□□□□□ -1.08
SHMT2-229ENST00000557348 TRAV23DV6A0A075B6W5 121 aa8.32□□□□□ -1.08
SHMT2-229ENST00000557348 C4orf26Q17RF5 130 aa8.32□□□□□ -1.08
SHMT2-229ENST00000557348 LINC00575Q6W349 94 aa8.32□□□□□ -1.08
SHMT2-229ENST00000557348 C14orf177Q52M58 125 aa8.31□□□□□ -1.08
SHMT2-229ENST00000557348 IGLV6-57P01721 117 aa8.3□□□□□ -1.08
SHMT2-229ENST00000557348 HRCT1Q6UXD1 115 aa8.3□□□□□ -1.08
SHMT2-229ENST00000557348 TRBV7-6A0A0J9YX20 115 aa8.29□□□□□ -1.08
SHMT2-229ENST00000557348 SLPIP03973 132 aa8.29□□□□□ -1.08
SHMT2-229ENST00000557348 LINC01547P58512 204 aaPredicted RBP8.29□□□□□ -1.08
SHMT2-229ENST00000557348 FAM19A1Q7Z5A9 133 aa8.29□□□□□ -1.08
SHMT2-229ENST00000557348 PKIGQ9Y2B9 76 aa8.29□□□□□ -1.08
SHMT2-229ENST00000557348 M0R378 163 aa8.28□□□□□ -1.08
SHMT2-229ENST00000557348 PSCAO43653 123 aa8.27□□□□□ -1.08
SHMT2-229ENST00000557348 XAGE1AQ9HD64 81 aa8.27□□□□□ -1.08
SHMT2-229ENST00000557348 PLA2G2DQ9UNK4 145 aa8.27□□□□□ -1.08
SHMT2-229ENST00000557348 STAB2Q8WWQ8 2551 aa8.27□□□□□ -1.09
SHMT2-229ENST00000557348 VPREB1P12018 145 aa8.27□□□□□ -1.09
SHMT2-229ENST00000557348 PRR3P79522 188 aaKnown RBP8.27□□□□□ -1.09
SHMT2-229ENST00000557348 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.27□□□□□ -1.09
SHMT2-229ENST00000557348 A0A1B0GW54 56 aa8.26□□□□□ -1.09
SHMT2-229ENST00000557348 Q6ZVQ6 151 aa8.26□□□□□ -1.09
SHMT2-229ENST00000557348 HUWE1Q7Z6Z7 4374 aaKnown RBP8.26□□□□□ -1.09
SHMT2-229ENST00000557348 Q6ZRP5 223 aa8.25□□□□□ -1.09
SHMT2-229ENST00000557348 NBDYA0A0U1RRE5 68 aa8.24□□□□□ -1.09
SHMT2-229ENST00000557348 C6orf99Q4VX62 202 aa8.24□□□□□ -1.09
SHMT2-229ENST00000557348 Q8NDZ9 215 aa8.24□□□□□ -1.09
SHMT2-229ENST00000557348 DIRC1Q969H9 104 aa8.24□□□□□ -1.09
SHMT2-229ENST00000557348 CNBPP62633 177 aaKnown RBP8.24□□□□□ -1.09
SHMT2-229ENST00000557348 NKAPP1Q8N9T2 125 aa8.24□□□□□ -1.09
SHMT2-229ENST00000557348 LAMTOR3Q9UHA4 124 aa8.24□□□□□ -1.09
SHMT2-229ENST00000557348 KRTAP1-5Q9BYS1 174 aa8.23□□□□□ -1.09
SHMT2-229ENST00000557348 IGLV5-37A0A075B6J1 123 aa8.22□□□□□ -1.09
SHMT2-229ENST00000557348 TRBV7-4A0A0J9YYF1 115 aa8.22□□□□□ -1.09
SHMT2-229ENST00000557348 CASC10Q5T4H9 136 aa8.22□□□□□ -1.09
SHMT2-229ENST00000557348 ZNF73O43830 326 aaPredicted RBP8.21□□□□□ -1.1
SHMT2-229ENST00000557348 HAMPP81172 84 aa8.2□□□□□ -1.1
SHMT2-229ENST00000557348 F8WEM9 126 aa8.19□□□□□ -1.1
SHMT2-229ENST00000557348 COX7BP24311 80 aa8.18□□□□□ -1.1
SHMT2-229ENST00000557348 ELOF1P60002 83 aaKnown RBP8.18□□□□□ -1.1
SHMT2-229ENST00000557348 LINC00336Q6ZUF6 198 aa8.17□□□□□ -1.1
SHMT2-229ENST00000557348 KCNQ1DNQ9H478 68 aa8.17□□□□□ -1.1
SHMT2-229ENST00000557348 C16orf90A8MZG2 172 aa8.16□□□□□ -1.1
SHMT2-229ENST00000557348 PRYO14603 147 aa8.16□□□□□ -1.1
SHMT2-229ENST00000557348 NREPQ16612 68 aa8.16□□□□□ -1.1
SHMT2-229ENST00000557348 TMEM254Q8TBM7 123 aa8.16□□□□□ -1.1
SHMT2-229ENST00000557348 FP248Q71RG6 208 aaPredicted RBP8.15□□□□□ -1.1
SHMT2-229ENST00000557348 Q6ZQY7 126 aa8.14□□□□□ -1.11
SHMT2-229ENST00000557348 COL7A1Q02388 2944 aa8.14□□□□□ -1.11
SHMT2-229ENST00000557348 DNAH9Q9NYC9 4486 aa8.14□□□□□ -1.11
SHMT2-229ENST00000557348 BPY2O14599 106 aa8.14□□□□□ -1.11
SHMT2-229ENST00000557348 C7orf33Q8WU49 177 aa8.14□□□□□ -1.11
SHMT2-229ENST00000557348 LINC00474Q9P2X8 69 aa8.14□□□□□ -1.11
SHMT2-229ENST00000557348 SERTAD4-AS1Q5TG53 156 aa8.13□□□□□ -1.11
SHMT2-229ENST00000557348 Q6ZRN7 208 aaPredicted RBP8.13□□□□□ -1.11
SHMT2-229ENST00000557348 MRPL55Q7Z7F7 128 aaKnown RBP8.12□□□□□ -1.11
SHMT2-229ENST00000557348 LRCOL1A6NCL2 159 aa8.11□□□□□ -1.11
SHMT2-229ENST00000557348 WWC2-AS2Q96NR7 200 aa8.11□□□□□ -1.11
SHMT2-229ENST00000557348 IGLV1-50A0A075B6I6 118 aa8.11□□□□□ -1.11
SHMT2-229ENST00000557348 A0A0U1RQV1 116 aa8.11□□□□□ -1.11
SHMT2-229ENST00000557348 LINC00528Q8N1L1 170 aa8.11□□□□□ -1.11
SHMT2-229ENST00000557348 C9orf163Q8N9P6 203 aa8.11□□□□□ -1.11
SHMT2-229ENST00000557348 DHRS4-AS1Q9P1J3 65 aa8.11□□□□□ -1.11
SHMT2-229ENST00000557348 Q6ZR54 194 aa8.1□□□□□ -1.11
SHMT2-229ENST00000557348 SNURFQ9Y675 71 aa8.1□□□□□ -1.11
SHMT2-229ENST00000557348 OCR1Q9BZK8 76 aa8.09□□□□□ -1.11
SHMT2-229ENST00000557348 SPRR1AP35321 89 aa8.08□□□□□ -1.12
SHMT2-229ENST00000557348 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.08□□□□□ -1.12
SHMT2-229ENST00000557348 A0A096LNI7 61 aa8.08□□□□□ -1.12
SHMT2-229ENST00000557348 ETDCA0A1B0GVM5 59 aa8.08□□□□□ -1.12
SHMT2-229ENST00000557348 LCE6AA0A183 80 aa8.07□□□□□ -1.12
SHMT2-229ENST00000557348 FUSP35637 526 aaKnown RBP eCLIP8.07□□□□□ -1.12
SHMT2-229ENST00000557348 FAM168BA1KXE4 195 aa8.06□□□□□ -1.12
SHMT2-229ENST00000557348 Q6ZRX8 168 aa8.06□□□□□ -1.12
SHMT2-229ENST00000557348 C3orf84H3BNL1 204 aa8.05□□□□□ -1.12
SHMT2-229ENST00000557348 DYNC2H1Q8NCM8 4307 aaKnown RBP8.05□□□□□ -1.12
SHMT2-229ENST00000557348 A0A087WTM6 91 aa8.05□□□□□ -1.12
SHMT2-229ENST00000557348 KRTAP4-16G5E9R7 235 aaPredicted RBP8.05□□□□□ -1.12
SHMT2-229ENST00000557348 M0R2N4 97 aa8.05□□□□□ -1.12
SHMT2-229ENST00000557348 IGKV4-1P06312 121 aa8.05□□□□□ -1.12
SHMT2-229ENST00000557348 C1orf134Q5TEV5 83 aa8.05□□□□□ -1.12
SHMT2-229ENST00000557348 REG3GQ6UW15 175 aa8.05□□□□□ -1.12
SHMT2-229ENST00000557348 IGKV2-24A0A0C4DH68 120 aa8.04□□□□□ -1.12
SHMT2-229ENST00000557348 KRTAP7-1Q8IUC3 87 aa8.04□□□□□ -1.12
SHMT2-229ENST00000557348 RPL37AP8A6NKH3 93 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 267.9 ms