RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 FAM218AQ96MZ4 157 aa4.33□□□□□ -1.72
SCFD1-222ENST00000556768 J3QQQ9 107 aa4.32□□□□□ -1.72
SCFD1-222ENST00000556768 LEPROTO15243 131 aa4.32□□□□□ -1.72
SCFD1-222ENST00000556768 IGKCP01834 107 aa4.32□□□□□ -1.72
SCFD1-222ENST00000556768 ANAPC11Q9NYG5 84 aa4.32□□□□□ -1.72
SCFD1-222ENST00000556768 ZNF706Q9Y5V0 76 aaPredicted RBP4.32□□□□□ -1.72
SCFD1-222ENST00000556768 ETDCA0A1B0GVM5 59 aa4.32□□□□□ -1.72
SCFD1-222ENST00000556768 PCP4L1A6NKN8 68 aa4.32□□□□□ -1.72
SCFD1-222ENST00000556768 COLCA2A8K830 154 aa4.32□□□□□ -1.72
SCFD1-222ENST00000556768 NCR3O14931 201 aa4.31□□□□□ -1.72
SCFD1-222ENST00000556768 LINC00304Q8N9R0 145 aa4.31□□□□□ -1.72
SCFD1-222ENST00000556768 CTAG1AP78358 180 aa4.3□□□□□ -1.72
SCFD1-222ENST00000556768 S100A7L2Q5SY68 101 aa4.3□□□□□ -1.72
SCFD1-222ENST00000556768 LINC00337Q8N6G1 96 aa4.3□□□□□ -1.72
SCFD1-222ENST00000556768 Q8NDZ9 215 aa4.3□□□□□ -1.72
SCFD1-222ENST00000556768 PMCHL2Q9BQD1 86 aa4.3□□□□□ -1.72
SCFD1-222ENST00000556768 KCNQ1DNQ9H478 68 aa4.3□□□□□ -1.72
SCFD1-222ENST00000556768 LPAP08519 4548 aa4.3□□□□□ -1.72
SCFD1-222ENST00000556768 SEC61GP60059 68 aa4.3□□□□□ -1.72
SCFD1-222ENST00000556768 CBY1Q9Y3M2 126 aa4.3□□□□□ -1.72
SCFD1-222ENST00000556768 TRBV10-3A0A0K0K1G6 114 aa4.29□□□□□ -1.72
SCFD1-222ENST00000556768 TRBV10-2A0A0K0K1G8 114 aa4.29□□□□□ -1.72
SCFD1-222ENST00000556768 DDTP30046 118 aa4.29□□□□□ -1.72
SCFD1-222ENST00000556768 SPAG11AQ6PDA7 123 aa4.29□□□□□ -1.72
SCFD1-222ENST00000556768 DAND5Q8N907 189 aa4.29□□□□□ -1.72
SCFD1-222ENST00000556768 SPANXB1Q9NS25 103 aaPredicted RBP4.29□□□□□ -1.72
SCFD1-222ENST00000556768 LOC107984156A0A0G2JMH3 177 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 HINT1P49773 126 aaPredicted RBP4.28□□□□□ -1.72
SCFD1-222ENST00000556768 JOSD1Q15040 202 aaPredicted RBP4.28□□□□□ -1.72
SCFD1-222ENST00000556768 KRTAP13-2Q52LG2 175 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 ARL17AQ8IVW1 177 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 E9PLD3 99 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 SYS1-DBNDD2H3BUS1 97 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 HIST1H2BKO60814 126 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 NDUFC2O95298 119 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 HIST1H2BJP06899 126 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 HIST1H2BOP23527 126 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 HIST1H2BBP33778 126 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 HIST1H2BDP58876 126 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 TSPEAR-AS2P59090 65 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 HIST1H2BCP62807 126 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 HIST2H2BEQ16778 126 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.28□□□□□ -1.72
SCFD1-222ENST00000556768 HIST1H2BHQ93079 126 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 SPRR4Q96PI1 79 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 HIST1H2BNQ99877 126 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 HIST1H2BMQ99879 126 aa4.28□□□□□ -1.72
SCFD1-222ENST00000556768 SPRR1AP35321 89 aa4.27□□□□□ -1.73
SCFD1-222ENST00000556768 SMCR5Q8TEV8 140 aa4.27□□□□□ -1.73
SCFD1-222ENST00000556768 MUC2Q02817 5179 aa4.27□□□□□ -1.73
SCFD1-222ENST00000556768 A0A0J9YXY3 114 aa4.25□□□□□ -1.73
SCFD1-222ENST00000556768 TRAV23DV6A0A075B6W5 121 aa4.25□□□□□ -1.73
SCFD1-222ENST00000556768 C20orf202A1L168 122 aa4.25□□□□□ -1.73
SCFD1-222ENST00000556768 AKR1D1P51857 326 aa4.25□□□□□ -1.73
SCFD1-222ENST00000556768 NPC2P61916 151 aa4.25□□□□□ -1.73
SCFD1-222ENST00000556768 C3orf22Q8N5N4 141 aa4.25□□□□□ -1.73
SCFD1-222ENST00000556768 PPDPFQ9H3Y8 114 aa4.25□□□□□ -1.73
SCFD1-222ENST00000556768 IGLV7-46A0A075B6I9 117 aa4.24□□□□□ -1.73
SCFD1-222ENST00000556768 A0A0U1RQV1 116 aa4.24□□□□□ -1.73
SCFD1-222ENST00000556768 ZNF815PA8K554 130 aa4.24□□□□□ -1.73
SCFD1-222ENST00000556768 KRTAP9-7A8MTY7 169 aa4.24□□□□□ -1.73
SCFD1-222ENST00000556768 KRTAP4-16G5E9R7 235 aaPredicted RBP4.24□□□□□ -1.73
SCFD1-222ENST00000556768 SPINK1P00995 79 aa4.24□□□□□ -1.73
SCFD1-222ENST00000556768 IGLV6-57P01721 117 aa4.24□□□□□ -1.73
SCFD1-222ENST00000556768 LINC01545Q5VT33 79 aa4.24□□□□□ -1.73
SCFD1-222ENST00000556768 Q6ZRX8 168 aa4.24□□□□□ -1.73
SCFD1-222ENST00000556768 OR13C6PQ8NH95 151 aa4.24□□□□□ -1.73
SCFD1-222ENST00000556768 COPS9Q8WXC6 57 aa4.24□□□□□ -1.73
SCFD1-222ENST00000556768 RETNLBQ9BQ08 111 aa4.24□□□□□ -1.73
SCFD1-222ENST00000556768 SPANXCQ9NY87 97 aa4.24□□□□□ -1.73
SCFD1-222ENST00000556768 ZNF73O43830 326 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-222ENST00000556768 TIMM17BO60830 172 aa4.23□□□□□ -1.73
SCFD1-222ENST00000556768 KRTDAPP60985 99 aa4.23□□□□□ -1.73
SCFD1-222ENST00000556768 ADAMTSL4-AS1Q5T5F5 129 aa4.23□□□□□ -1.73
SCFD1-222ENST00000556768 SCGB1D4Q6XE38 83 aa4.23□□□□□ -1.73
SCFD1-222ENST00000556768 PRAC1Q96KF2 57 aa4.23□□□□□ -1.73
SCFD1-222ENST00000556768 Q8NBF4 154 aa4.23□□□□□ -1.73
SCFD1-222ENST00000556768 C3orf79P0CE67 100 aa4.22□□□□□ -1.73
SCFD1-222ENST00000556768 LINC00483Q53H64 154 aa4.22□□□□□ -1.73
SCFD1-222ENST00000556768 SSBP3-AS1Q7Z2R9 100 aa4.22□□□□□ -1.73
SCFD1-222ENST00000556768 LINC00308Q8TCZ7 52 aa4.22□□□□□ -1.73
SCFD1-222ENST00000556768 TPRXLQ17RH7 258 aa4.21□□□□□ -1.74
SCFD1-222ENST00000556768 COA6Q5JTJ3 125 aaKnown RBP4.21□□□□□ -1.74
SCFD1-222ENST00000556768 SLC25A34Q6PIV7 304 aa4.21□□□□□ -1.74
SCFD1-222ENST00000556768 FP248Q71RG6 208 aaPredicted RBP4.21□□□□□ -1.74
SCFD1-222ENST00000556768 MOBPQ13875 183 aa4.21□□□□□ -1.74
SCFD1-222ENST00000556768 SOSTDC1Q6X4U4 206 aa4.21□□□□□ -1.74
SCFD1-222ENST00000556768 Q9BRP9 147 aa4.21□□□□□ -1.74
SCFD1-222ENST00000556768 SPANXDQ9BXN6 97 aa4.21□□□□□ -1.74
SCFD1-222ENST00000556768 DHRS4-AS1Q9P1J3 65 aa4.21□□□□□ -1.74
SCFD1-222ENST00000556768 ERC2-IT1O76042 136 aa4.2□□□□□ -1.74
SCFD1-222ENST00000556768 LCE4AQ5TA78 99 aa4.19□□□□□ -1.74
SCFD1-222ENST00000556768 C9orf153Q5TBE3 101 aa4.19□□□□□ -1.74
SCFD1-222ENST00000556768 Q6ZVH6 145 aa4.19□□□□□ -1.74
SCFD1-222ENST00000556768 LITAFQ99732 161 aa4.19□□□□□ -1.74
SCFD1-222ENST00000556768 IFITM1P13164 125 aa4.18□□□□□ -1.74
SCFD1-222ENST00000556768 S100A2P29034 98 aa4.18□□□□□ -1.74
SCFD1-222ENST00000556768 RPS29P62273 56 aaKnown RBP4.18□□□□□ -1.74
SCFD1-222ENST00000556768 A6NDN8 102 aa4.18□□□□□ -1.74
SCFD1-222ENST00000556768 HSBP1L1C9JCN9 74 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 188 ms