RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	TRBV10-3	A0A0K0K1G6	114 aa		4.61	□□□□□ -1.67
SYNE2-222	ENST00000556725	COX6B2	Q6YFQ2	88 aa		4.61	□□□□□ -1.67
SYNE2-222	ENST00000556725	BOD1L2	Q8IYS8	172 aa		4.61	□□□□□ -1.67
SYNE2-222	ENST00000556725	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.6	□□□□□ -1.67
SYNE2-222	ENST00000556725	SMIM13	P0DJ93	91 aa		4.6	□□□□□ -1.67
SYNE2-222	ENST00000556725	C9orf153	Q5TBE3	101 aa		4.6	□□□□□ -1.67
SYNE2-222	ENST00000556725	LINC01549	A6NIU2	74 aa		4.59	□□□□□ -1.67
SYNE2-222	ENST00000556725	C11orf86	A6NJI1	115 aa		4.59	□□□□□ -1.67
SYNE2-222	ENST00000556725	MT-ND4L	P03901	98 aa		4.59	□□□□□ -1.67
SYNE2-222	ENST00000556725	HRCT1	Q6UXD1	115 aa		4.59	□□□□□ -1.67
SYNE2-222	ENST00000556725	RPS10P5	Q9NQ39	176 aa		4.59	□□□□□ -1.67
SYNE2-222	ENST00000556725	TRAV9-1	A0A075B6T8	112 aa		4.58	□□□□□ -1.68
SYNE2-222	ENST00000556725		A0A096LNJ9	63 aa		4.58	□□□□□ -1.68
SYNE2-222	ENST00000556725	LOC105371267	A0A1B0GV96	52 aa		4.58	□□□□□ -1.68
SYNE2-222	ENST00000556725	IGLV6-57	P01721	117 aa		4.58	□□□□□ -1.68
SYNE2-222	ENST00000556725	TMEM170B	Q5T4T1	132 aa		4.58	□□□□□ -1.68
SYNE2-222	ENST00000556725	COLCA2	A8K830	154 aa		4.57	□□□□□ -1.68
SYNE2-222	ENST00000556725	FA2H	Q7L5A8	372 aa		4.57	□□□□□ -1.68
SYNE2-222	ENST00000556725	MIR7-3HG	Q8N6C7	128 aa		4.57	□□□□□ -1.68
SYNE2-222	ENST00000556725	ST20-AS1	Q8NBB2	130 aa		4.57	□□□□□ -1.68
SYNE2-222	ENST00000556725	KRTAP5-11	Q6L8G4	156 aa		4.56	□□□□□ -1.68
SYNE2-222	ENST00000556725	SFTA2	Q6UW10	78 aa		4.56	□□□□□ -1.68
SYNE2-222	ENST00000556725		Q6ZRX8	168 aa		4.56	□□□□□ -1.68
SYNE2-222	ENST00000556725	YPEL4	Q96NS1	127 aa		4.56	□□□□□ -1.68
SYNE2-222	ENST00000556725	S100P	P25815	95 aa		4.55	□□□□□ -1.68
SYNE2-222	ENST00000556725	MEIG1	Q5JSS6	88 aa		4.55	□□□□□ -1.68
SYNE2-222	ENST00000556725	BAGE3	Q86Y29	109 aa		4.55	□□□□□ -1.68
SYNE2-222	ENST00000556725	DDT	P30046	118 aa		4.54	□□□□□ -1.68
SYNE2-222	ENST00000556725	RPL37	P61927	97 aa	Known RBP	4.54	□□□□□ -1.68
SYNE2-222	ENST00000556725	PMCHL1	Q16048	86 aa		4.54	□□□□□ -1.68
SYNE2-222	ENST00000556725	URB1-AS1	Q96HZ7	61 aa		4.54	□□□□□ -1.68
SYNE2-222	ENST00000556725	LIMD2	Q9BT23	127 aa		4.54	□□□□□ -1.68
SYNE2-222	ENST00000556725	TMEM223	A0PJW6	202 aa		4.53	□□□□□ -1.68
SYNE2-222	ENST00000556725	S100A6	P06703	90 aa		4.53	□□□□□ -1.68
SYNE2-222	ENST00000556725	S100A12	P80511	92 aa		4.53	□□□□□ -1.68
SYNE2-222	ENST00000556725	COX19	Q49B96	90 aa		4.52	□□□□□ -1.69
SYNE2-222	ENST00000556725		Q6Q795	121 aa		4.52	□□□□□ -1.69
SYNE2-222	ENST00000556725	PCP4	P48539	62 aa		4.51	□□□□□ -1.69
SYNE2-222	ENST00000556725	FABP9	Q0Z7S8	132 aa		4.51	□□□□□ -1.69
SYNE2-222	ENST00000556725	CHTOP	Q9Y3Y2	248 aa	Known RBP	4.51	□□□□□ -1.69
SYNE2-222	ENST00000556725	TRBV10-2	A0A0K0K1G8	114 aa		4.5	□□□□□ -1.69
SYNE2-222	ENST00000556725	C5orf52	A6NGY3	159 aa		4.5	□□□□□ -1.69
SYNE2-222	ENST00000556725		H7C2G1	150 aa		4.5	□□□□□ -1.69
SYNE2-222	ENST00000556725	HBD	P02042	147 aa		4.5	□□□□□ -1.69
SYNE2-222	ENST00000556725	LINC00614	P0C842	121 aa		4.5	□□□□□ -1.69
SYNE2-222	ENST00000556725	KRTAP10-7	P60409	375 aa	Predicted RBP	4.5	□□□□□ -1.69
SYNE2-222	ENST00000556725	C1orf195	Q5TG92	126 aa		4.5	□□□□□ -1.69
SYNE2-222	ENST00000556725	LOC107984156	A0A0G2JMH3	177 aa		4.49	□□□□□ -1.69
SYNE2-222	ENST00000556725	CFC1	P0CG37	223 aa		4.49	□□□□□ -1.69
SYNE2-222	ENST00000556725	SMIM6	P0DI80	62 aa		4.49	□□□□□ -1.69
SYNE2-222	ENST00000556725	HERV-K104	P63124	156 aa		4.49	□□□□□ -1.69
SYNE2-222	ENST00000556725	JOSD1	Q15040	202 aa	Predicted RBP	4.49	□□□□□ -1.69
SYNE2-222	ENST00000556725	ARL17A	Q8IVW1	177 aa		4.49	□□□□□ -1.69
SYNE2-222	ENST00000556725	TRAV23DV6	A0A075B6W5	121 aa		4.48	□□□□□ -1.69
SYNE2-222	ENST00000556725	SPRR1B	P22528	89 aa		4.48	□□□□□ -1.69
SYNE2-222	ENST00000556725	S100A7L2	Q5SY68	101 aa		4.48	□□□□□ -1.69
SYNE2-222	ENST00000556725	C18orf32	Q8TCD1	76 aa		4.48	□□□□□ -1.69
SYNE2-222	ENST00000556725		A0A0G2JQZ4	141 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	LINC00587	B1AMM8	73 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	ZNF73	O43830	326 aa	Predicted RBP	4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	HIST1H2BK	O60814	126 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	HIST1H2BJ	P06899	126 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	HIST1H2BO	P23527	126 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	HIST1H2BB	P33778	126 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	HIST1H2BD	P58876	126 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	TSPEAR-AS2	P59090	65 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	HIST1H2BC	P62807	126 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	HIST2H2BE	Q16778	126 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	COA6	Q5JTJ3	125 aa	Known RBP	4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	LINC00518	Q8N0U6	118 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	HIST1H2BH	Q93079	126 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	HIST1H2BN	Q99877	126 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	HIST1H2BM	Q99879	126 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	MAP1LC3C	Q9BXW4	147 aa		4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	SPANXB1	Q9NS25	103 aa	Predicted RBP	4.47	□□□□□ -1.69
SYNE2-222	ENST00000556725	MYMX	A0A1B0GTQ4	84 aa		4.46	□□□□□ -1.7
SYNE2-222	ENST00000556725	TRGC2	P03986	189 aa		4.46	□□□□□ -1.7
SYNE2-222	ENST00000556725	AKR1D1	P51857	326 aa		4.46	□□□□□ -1.7
SYNE2-222	ENST00000556725	SNRPE	P62304	92 aa	Known RBP	4.46	□□□□□ -1.7
SYNE2-222	ENST00000556725	CD164	Q04900	197 aa		4.46	□□□□□ -1.7
SYNE2-222	ENST00000556725	LAMTOR3	Q9UHA4	124 aa		4.46	□□□□□ -1.7
SYNE2-222	ENST00000556725	S100A2	P29034	98 aa		4.45	□□□□□ -1.7
SYNE2-222	ENST00000556725		Q1RN00	199 aa		4.45	□□□□□ -1.7
SYNE2-222	ENST00000556725	SOSTDC1	Q6X4U4	206 aa		4.45	□□□□□ -1.7
SYNE2-222	ENST00000556725	SYNE2	Q8WXH0	6885 aa	Known RBP	4.45	□□□□□ -1.7
SYNE2-222	ENST00000556725	MACF1	Q9UPN3	7388 aa	Known RBP	4.44	□□□□□ -1.7
SYNE2-222	ENST00000556725	TRAV12-1	A0A0B4J245	112 aa		4.44	□□□□□ -1.7
SYNE2-222	ENST00000556725	NDUFC2	O95298	119 aa		4.44	□□□□□ -1.7
SYNE2-222	ENST00000556725	NPC2	P61916	151 aa		4.44	□□□□□ -1.7
SYNE2-222	ENST00000556725		Q5XG85	94 aa		4.44	□□□□□ -1.7
SYNE2-222	ENST00000556725	SLC25A34	Q6PIV7	304 aa		4.44	□□□□□ -1.7
SYNE2-222	ENST00000556725	SMIM29	Q86T20	159 aa		4.44	□□□□□ -1.7
SYNE2-222	ENST00000556725	PRO1933	Q9H354	126 aa		4.44	□□□□□ -1.7
SYNE2-222	ENST00000556725	MT2A	P02795	61 aa		4.43	□□□□□ -1.7
SYNE2-222	ENST00000556725	HIST3H2BB	Q8N257	126 aa		4.43	□□□□□ -1.7
SYNE2-222	ENST00000556725	DEFB105A	Q8NG35	78 aa		4.43	□□□□□ -1.7
SYNE2-222	ENST00000556725	IFI27L1	Q96BM0	104 aa		4.43	□□□□□ -1.7
SYNE2-222	ENST00000556725	C12orf57	Q99622	126 aa		4.43	□□□□□ -1.7
SYNE2-222	ENST00000556725	MIEN1	Q9BRT3	115 aa		4.43	□□□□□ -1.7

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