RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 A0A1W2PNN7 141 aa9□□□□□ -0.97
PRPF40B-209ENST00000548825 PSCAO43653 123 aa9□□□□□ -0.97
PRPF40B-209ENST00000548825 LINC01547P58512 204 aaPredicted RBP9□□□□□ -0.97
PRPF40B-209ENST00000548825 SERP2Q8N6R1 65 aa9□□□□□ -0.97
PRPF40B-209ENST00000548825 COL7A1Q02388 2944 aa8.99□□□□□ -0.97
PRPF40B-209ENST00000548825 LINC00588Q9Y4M8 146 aa8.99□□□□□ -0.97
PRPF40B-209ENST00000548825 C7orf33Q8WU49 177 aa8.98□□□□□ -0.97
PRPF40B-209ENST00000548825 ETDCA0A1B0GVM5 59 aa8.98□□□□□ -0.97
PRPF40B-209ENST00000548825 TRAV10A0A0B4J240 114 aa8.97□□□□□ -0.97
PRPF40B-209ENST00000548825 ST20-AS1Q8NBB2 130 aa8.97□□□□□ -0.97
PRPF40B-209ENST00000548825 UBE2DNLQ8IWF7 75 aa8.97□□□□□ -0.97
PRPF40B-209ENST00000548825 ELOF1P60002 83 aaKnown RBP8.96□□□□□ -0.97
PRPF40B-209ENST00000548825 C2orf48Q96LS8 159 aa8.96□□□□□ -0.97
PRPF40B-209ENST00000548825 LINC00167Q96N53 147 aa8.96□□□□□ -0.97
PRPF40B-209ENST00000548825 LINC01556Q5JQF7 62 aa8.95□□□□□ -0.98
PRPF40B-209ENST00000548825 A0A096LNI7 61 aa8.95□□□□□ -0.98
PRPF40B-209ENST00000548825 NREPQ16612 68 aa8.95□□□□□ -0.98
PRPF40B-209ENST00000548825 KRTAP26-1Q6PEX3 210 aa8.94□□□□□ -0.98
PRPF40B-209ENST00000548825 GVQW2A0A096LPI5 108 aaPredicted RBP8.94□□□□□ -0.98
PRPF40B-209ENST00000548825 BPY2O14599 106 aa8.93□□□□□ -0.98
PRPF40B-209ENST00000548825 HIGD2AQ9BW72 106 aa8.93□□□□□ -0.98
PRPF40B-209ENST00000548825 DEFB116Q30KQ4 102 aa8.92□□□□□ -0.98
PRPF40B-209ENST00000548825 C5orf47Q569G3 176 aa8.92□□□□□ -0.98
PRPF40B-209ENST00000548825 LINC00528Q8N1L1 170 aa8.91□□□□□ -0.98
PRPF40B-209ENST00000548825 FUSP35637 526 aaKnown RBP eCLIP8.9□□□□□ -0.98
PRPF40B-209ENST00000548825 PRLHP81277 87 aa8.9□□□□□ -0.98
PRPF40B-209ENST00000548825 RMI2Q96E14 147 aa8.89□□□□□ -0.99
PRPF40B-209ENST00000548825 K7EIL1 84 aa8.88□□□□□ -0.99
PRPF40B-209ENST00000548825 ERC2-IT1O76042 136 aa8.88□□□□□ -0.99
PRPF40B-209ENST00000548825 CHTF8P0CG12 524 aa8.88□□□□□ -0.99
PRPF40B-209ENST00000548825 TM2D3Q9BRN9 247 aa8.88□□□□□ -0.99
PRPF40B-209ENST00000548825 H3BNG1 76 aa8.87□□□□□ -0.99
PRPF40B-209ENST00000548825 WIPF1O43516 503 aa8.87□□□□□ -0.99
PRPF40B-209ENST00000548825 CRYGAP11844 174 aa8.87□□□□□ -0.99
PRPF40B-209ENST00000548825 ATP5EP2Q5VTU8 51 aa8.87□□□□□ -0.99
PRPF40B-209ENST00000548825 LOC110117498A0A087WWA1 95 aa8.86□□□□□ -0.99
PRPF40B-209ENST00000548825 Q8N377 158 aa8.85□□□□□ -0.99
PRPF40B-209ENST00000548825 DNAH10OSP0CZ25 163 aa8.85□□□□□ -0.99
PRPF40B-209ENST00000548825 LYSTQ99698 3801 aa8.84□□□□□ -0.99
PRPF40B-209ENST00000548825 TGP01266 2768 aa8.84□□□□□ -0.99
PRPF40B-209ENST00000548825 TRBV7-4A0A0J9YYF1 115 aa8.84□□□□□ -0.99
PRPF40B-209ENST00000548825 PDE6GP18545 87 aa8.84□□□□□ -0.99
PRPF40B-209ENST00000548825 MRPL55Q7Z7F7 128 aaKnown RBP8.84□□□□□ -0.99
PRPF40B-209ENST00000548825 J3KT08 172 aa8.83□□□□□ -1
PRPF40B-209ENST00000548825 Q9BRP9 147 aa8.83□□□□□ -1
PRPF40B-209ENST00000548825 C1orf137Q5JT78 98 aa8.83□□□□□ -1
PRPF40B-209ENST00000548825 FAM30AQ9NZY2 134 aa8.81□□□□□ -1
PRPF40B-209ENST00000548825 F8WEM9 126 aa8.81□□□□□ -1
PRPF40B-209ENST00000548825 KRTAP1-5Q9BYS1 174 aa8.81□□□□□ -1
PRPF40B-209ENST00000548825 Q6ZRX8 168 aa8.8□□□□□ -1
PRPF40B-209ENST00000548825 KCNQ1DNQ9H478 68 aa8.79□□□□□ -1
PRPF40B-209ENST00000548825 IGLV1-50A0A075B6I6 118 aa8.78□□□□□ -1
PRPF40B-209ENST00000548825 TMEM258P61165 79 aa8.77□□□□□ -1
PRPF40B-209ENST00000548825 DNAH10Q8IVF4 4471 aa8.77□□□□□ -1.01
PRPF40B-209ENST00000548825 REG3GQ6UW15 175 aa8.77□□□□□ -1.01
PRPF40B-209ENST00000548825 PHF5AQ7RTV0 110 aaKnown RBP8.77□□□□□ -1.01
PRPF40B-209ENST00000548825 TRAV7A0A075B6U4 112 aa8.76□□□□□ -1.01
PRPF40B-209ENST00000548825 PRR4Q16378 134 aa8.76□□□□□ -1.01
PRPF40B-209ENST00000548825 KRTAP7-1Q8IUC3 87 aa8.76□□□□□ -1.01
PRPF40B-209ENST00000548825 DHRS4-AS1Q9P1J3 65 aa8.76□□□□□ -1.01
PRPF40B-209ENST00000548825 FAM236DA0A1B0GTK5 79 aa8.75□□□□□ -1.01
PRPF40B-209ENST00000548825 FAM236CP0DP71 79 aa8.75□□□□□ -1.01
PRPF40B-209ENST00000548825 A0A1W2PNM2 257 aa8.75□□□□□ -1.01
PRPF40B-209ENST00000548825 CXCL6P80162 114 aa8.75□□□□□ -1.01
PRPF40B-209ENST00000548825 WFDC13Q8IUB5 93 aa8.75□□□□□ -1.01
PRPF40B-209ENST00000548825 H3BQ85 93 aa8.74□□□□□ -1.01
PRPF40B-209ENST00000548825 TRBV7-6A0A0J9YX20 115 aa8.74□□□□□ -1.01
PRPF40B-209ENST00000548825 SMIM29Q86T20 159 aa8.74□□□□□ -1.01
PRPF40B-209ENST00000548825 OXTP01178 125 aa8.73□□□□□ -1.01
PRPF40B-209ENST00000548825 SEC61GP60059 68 aa8.73□□□□□ -1.01
PRPF40B-209ENST00000548825 A0A087WSZ3 146 aa8.72□□□□□ -1.01
PRPF40B-209ENST00000548825 LRCOL1A6NCL2 159 aa8.72□□□□□ -1.01
PRPF40B-209ENST00000548825 F8WDY8 70 aa8.72□□□□□ -1.01
PRPF40B-209ENST00000548825 C4orf26Q17RF5 130 aa8.72□□□□□ -1.01
PRPF40B-209ENST00000548825 HRCT1Q6UXD1 115 aa8.72□□□□□ -1.01
PRPF40B-209ENST00000548825 RPL37AP61513 92 aaKnown RBP8.71□□□□□ -1.01
PRPF40B-209ENST00000548825 UBE2AP49459 152 aa8.71□□□□□ -1.02
PRPF40B-209ENST00000548825 PRYO14603 147 aa8.7□□□□□ -1.02
PRPF40B-209ENST00000548825 IGKV4-1P06312 121 aa8.7□□□□□ -1.02
PRPF40B-209ENST00000548825 LINC00476Q8WZB0 136 aa8.7□□□□□ -1.02
PRPF40B-209ENST00000548825 MDFIQ99750 246 aa8.7□□□□□ -1.02
PRPF40B-209ENST00000548825 TMEM254Q8TBM7 123 aa8.7□□□□□ -1.02
PRPF40B-209ENST00000548825 K7EQZ3 153 aa8.69□□□□□ -1.02
PRPF40B-209ENST00000548825 H7BZZ5 65 aa8.69□□□□□ -1.02
PRPF40B-209ENST00000548825 MPLKIPQ8TAP9 179 aa8.67□□□□□ -1.02
PRPF40B-209ENST00000548825 IGLV9-49A0A0B4J1Y8 123 aa8.66□□□□□ -1.02
PRPF40B-209ENST00000548825 Q8NBF4 154 aa8.66□□□□□ -1.02
PRPF40B-209ENST00000548825 HUWE1Q7Z6Z7 4374 aaKnown RBP8.66□□□□□ -1.02
PRPF40B-209ENST00000548825 KRTAP11-1Q8IUC1 163 aa8.65□□□□□ -1.02
PRPF40B-209ENST00000548825 TLX1NBP0CAT3 122 aa8.64□□□□□ -1.03
PRPF40B-209ENST00000548825 EPM2AB3EWF7 344 aa8.64□□□□□ -1.03
PRPF40B-209ENST00000548825 CMYA5Q8N3K9 4069 aa8.63□□□□□ -1.03
PRPF40B-209ENST00000548825 IGFL1Q6UW32 110 aa8.63□□□□□ -1.03
PRPF40B-209ENST00000548825 PKIGQ9Y2B9 76 aa8.63□□□□□ -1.03
PRPF40B-209ENST00000548825 IGLV5-48A0A075B6I7 105 aa8.63□□□□□ -1.03
PRPF40B-209ENST00000548825 KRTAP4-16G5E9R7 235 aaPredicted RBP8.62□□□□□ -1.03
PRPF40B-209ENST00000548825 C16orf90A8MZG2 172 aa8.62□□□□□ -1.03
PRPF40B-209ENST00000548825 LINC00474Q9P2X8 69 aa8.62□□□□□ -1.03
PRPF40B-209ENST00000548825 H0Y9J4 135 aa8.61□□□□□ -1.03
PRPF40B-209ENST00000548825 PANO1I0J062 215 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms