RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 COX8AP10176 69 aa3.93□□□□□ -1.78
PRKDC-211ENST00000546304 NPC2P61916 151 aa3.93□□□□□ -1.78
PRKDC-211ENST00000546304 UBE2BP63146 152 aa3.93□□□□□ -1.78
PRKDC-211ENST00000546304 PRR3P79522 188 aaKnown RBP3.93□□□□□ -1.78
PRKDC-211ENST00000546304 RPL24P83731 157 aaKnown RBP3.93□□□□□ -1.78
PRKDC-211ENST00000546304 SOSTDC1Q6X4U4 206 aa3.93□□□□□ -1.78
PRKDC-211ENST00000546304 SPANXDQ9BXN6 97 aa3.93□□□□□ -1.78
PRKDC-211ENST00000546304 SPANXCQ9NY87 97 aa3.93□□□□□ -1.78
PRKDC-211ENST00000546304 C22orf24Q9Y442 160 aa3.93□□□□□ -1.78
PRKDC-211ENST00000546304 LRP1Q07954 4544 aaKnown RBP3.93□□□□□ -1.78
PRKDC-211ENST00000546304 LOC107984156A0A0G2JMH3 177 aa3.92□□□□□ -1.78
PRKDC-211ENST00000546304 NCR3O14931 201 aa3.92□□□□□ -1.78
PRKDC-211ENST00000546304 SMIM6P0DI80 62 aa3.92□□□□□ -1.78
PRKDC-211ENST00000546304 ARL17AQ8IVW1 177 aa3.92□□□□□ -1.78
PRKDC-211ENST00000546304 LINC00308Q8TCZ7 52 aa3.92□□□□□ -1.78
PRKDC-211ENST00000546304 KRTAP2-2Q9BYT5 123 aa3.92□□□□□ -1.78
PRKDC-211ENST00000546304 SPANXB1Q9NS25 103 aaPredicted RBP3.92□□□□□ -1.78
PRKDC-211ENST00000546304 DLEU1O43261 78 aa3.91□□□□□ -1.78
PRKDC-211ENST00000546304 NDUFC2O95298 119 aa3.91□□□□□ -1.78
PRKDC-211ENST00000546304 KRTAP10-4P60372 401 aaPredicted RBP3.91□□□□□ -1.78
PRKDC-211ENST00000546304 VAMP3Q15836 100 aa3.91□□□□□ -1.78
PRKDC-211ENST00000546304 SLC25A34Q6PIV7 304 aa3.91□□□□□ -1.78
PRKDC-211ENST00000546304 Q6ZVH6 145 aa3.91□□□□□ -1.78
PRKDC-211ENST00000546304 KRTAP11-1Q8IUC1 163 aa3.91□□□□□ -1.78
PRKDC-211ENST00000546304 COPS9Q8WXC6 57 aa3.91□□□□□ -1.78
PRKDC-211ENST00000546304 C14orf144Q96I85 54 aa3.91□□□□□ -1.78
PRKDC-211ENST00000546304 PSORS1C2Q9UIG4 136 aa3.91□□□□□ -1.78
PRKDC-211ENST00000546304 IGKV2-28A0A075B6P5 120 aa3.9□□□□□ -1.79
PRKDC-211ENST00000546304 TRBV10-2A0A0K0K1G8 114 aa3.9□□□□□ -1.79
PRKDC-211ENST00000546304 RPL37AP8A6NKH3 93 aa3.9□□□□□ -1.79
PRKDC-211ENST00000546304 M0R378 163 aa3.9□□□□□ -1.79
PRKDC-211ENST00000546304 IGKV2D-28P01615 120 aa3.9□□□□□ -1.79
PRKDC-211ENST00000546304 IFITM1P13164 125 aa3.9□□□□□ -1.79
PRKDC-211ENST00000546304 S100A12P80511 92 aa3.9□□□□□ -1.79
PRKDC-211ENST00000546304 LINC00167Q96N53 147 aa3.9□□□□□ -1.79
PRKDC-211ENST00000546304 PPDPFQ9H3Y8 114 aa3.9□□□□□ -1.79
PRKDC-211ENST00000546304 DMBT1Q9UGM3 2413 aaPredicted RBP3.89□□□□□ -1.79
PRKDC-211ENST00000546304 LOC105371267A0A1B0GV96 52 aa3.89□□□□□ -1.79
PRKDC-211ENST00000546304 SRSF9Q13242 221 aaKnown RBP eCLIP3.89□□□□□ -1.79
PRKDC-211ENST00000546304 C1orf137Q5JT78 98 aa3.89□□□□□ -1.79
PRKDC-211ENST00000546304 C2orf91Q6ZV80 131 aa3.89□□□□□ -1.79
PRKDC-211ENST00000546304 IGLV1-50A0A075B6I6 118 aa3.88□□□□□ -1.79
PRKDC-211ENST00000546304 TRBV10-3A0A0K0K1G6 114 aa3.88□□□□□ -1.79
PRKDC-211ENST00000546304 DDTP30046 118 aa3.88□□□□□ -1.79
PRKDC-211ENST00000546304 RPL13AP40429 203 aaKnown RBP3.88□□□□□ -1.79
PRKDC-211ENST00000546304 HNRNPA3P51991 378 aaKnown RBP3.88□□□□□ -1.79
PRKDC-211ENST00000546304 S100A7L2Q5SY68 101 aa3.88□□□□□ -1.79
PRKDC-211ENST00000546304 HIST1H4GQ99525 98 aa3.88□□□□□ -1.79
PRKDC-211ENST00000546304 HIGD1BQ9P298 99 aa3.88□□□□□ -1.79
PRKDC-211ENST00000546304 TNXBP22105 4242 aa3.87□□□□□ -1.79
PRKDC-211ENST00000546304 BCE1O60756 84 aa3.87□□□□□ -1.79
PRKDC-211ENST00000546304 IGLV6-57P01721 117 aa3.87□□□□□ -1.79
PRKDC-211ENST00000546304 IGLV7-43P04211 117 aa3.87□□□□□ -1.79
PRKDC-211ENST00000546304 REG3GQ6UW15 175 aa3.87□□□□□ -1.79
PRKDC-211ENST00000546304 MUSTN1Q8IVN3 82 aa3.87□□□□□ -1.79
PRKDC-211ENST00000546304 LINC00337Q8N6G1 96 aa3.87□□□□□ -1.79
PRKDC-211ENST00000546304 TMEM126AQ9H061 195 aa3.87□□□□□ -1.79
PRKDC-211ENST00000546304 UQCR10Q9UDW1 63 aa3.87□□□□□ -1.79
PRKDC-211ENST00000546304 TRAV23DV6A0A075B6W5 121 aa3.86□□□□□ -1.79
PRKDC-211ENST00000546304 PRLHP81277 87 aa3.86□□□□□ -1.79
PRKDC-211ENST00000546304 LINC00518Q8N0U6 118 aa3.86□□□□□ -1.79
PRKDC-211ENST00000546304 KCNQ1DNQ9H478 68 aa3.86□□□□□ -1.79
PRKDC-211ENST00000546304 INAFM2P0DMQ5 153 aa3.85□□□□□ -1.79
PRKDC-211ENST00000546304 SPRR1AP35321 89 aa3.85□□□□□ -1.79
PRKDC-211ENST00000546304 RPL28P46779 137 aaKnown RBP3.85□□□□□ -1.79
PRKDC-211ENST00000546304 UBE2AP49459 152 aa3.85□□□□□ -1.79
PRKDC-211ENST00000546304 HSD52Q0P140 79 aa3.85□□□□□ -1.79
PRKDC-211ENST00000546304 TAL2Q16559 108 aa3.85□□□□□ -1.79
PRKDC-211ENST00000546304 FAM19A1Q7Z5A9 133 aa3.85□□□□□ -1.79
PRKDC-211ENST00000546304 KRTAP13-1Q8IUC0 172 aa3.85□□□□□ -1.79
PRKDC-211ENST00000546304 OR13C6PQ8NH95 151 aa3.85□□□□□ -1.79
PRKDC-211ENST00000546304 C12orf57Q99622 126 aa3.85□□□□□ -1.79
PRKDC-211ENST00000546304 PRO1933Q9H354 126 aa3.85□□□□□ -1.79
PRKDC-211ENST00000546304 HERC1Q15751 4861 aa3.85□□□□□ -1.79
PRKDC-211ENST00000546304 TRAV13-2A0A0B4J235 113 aa3.84□□□□□ -1.79
PRKDC-211ENST00000546304 ETDCA0A1B0GVM5 59 aa3.84□□□□□ -1.79
PRKDC-211ENST00000546304 A6NDN8 102 aa3.84□□□□□ -1.79
PRKDC-211ENST00000546304 ZNF73O43830 326 aaPredicted RBP3.84□□□□□ -1.79
PRKDC-211ENST00000546304 ZNF861PO60384 105 aa3.84□□□□□ -1.79
PRKDC-211ENST00000546304 SEC61BP60468 96 aaKnown RBP3.84□□□□□ -1.79
PRKDC-211ENST00000546304 SPINK6Q6UWN8 80 aa3.84□□□□□ -1.79
PRKDC-211ENST00000546304 PRR26Q8N8Z3 221 aa3.84□□□□□ -1.79
PRKDC-211ENST00000546304 DIRC1Q969H9 104 aa3.84□□□□□ -1.79
PRKDC-211ENST00000546304 KRTAP4-16G5E9R7 235 aaPredicted RBP3.83□□□□□ -1.8
PRKDC-211ENST00000546304 TSTD3H0UI37 97 aa3.83□□□□□ -1.8
PRKDC-211ENST00000546304 H0Y9J4 135 aa3.83□□□□□ -1.8
PRKDC-211ENST00000546304 FXYD2P54710 66 aa3.83□□□□□ -1.8
PRKDC-211ENST00000546304 Q6ZRX8 168 aa3.83□□□□□ -1.8
PRKDC-211ENST00000546304 CEND1Q8N111 149 aa3.83□□□□□ -1.8
PRKDC-211ENST00000546304 A0A0B4J2C4 111 aa3.82□□□□□ -1.8
PRKDC-211ENST00000546304 C6orf99Q4VX62 202 aa3.82□□□□□ -1.8
PRKDC-211ENST00000546304 HIGD2AQ9BW72 106 aa3.82□□□□□ -1.8
PRKDC-211ENST00000546304 CFC1BP0CG36 223 aa3.81□□□□□ -1.8
PRKDC-211ENST00000546304 CFC1P0CG37 223 aa3.81□□□□□ -1.8
PRKDC-211ENST00000546304 SMIM11BQ8TCY0 68 aa3.81□□□□□ -1.8
PRKDC-211ENST00000546304 RAB37Q96AX2 223 aa3.81□□□□□ -1.8
PRKDC-211ENST00000546304 K7ERJ3 54 aa3.8□□□□□ -1.8
PRKDC-211ENST00000546304 HINT1P49773 126 aaPredicted RBP3.8□□□□□ -1.8
PRKDC-211ENST00000546304 ELOF1P60002 83 aaKnown RBP3.8□□□□□ -1.8
PRKDC-211ENST00000546304 C5orf47Q569G3 176 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms