RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 LOC110117498A0A087WWA1 95 aa9.86□□□□□ -0.83
USP28-214ENST00000545540 C11orf45Q8TAV5 145 aa9.86□□□□□ -0.83
USP28-214ENST00000545540 DPH3Q96FX2 82 aa9.86□□□□□ -0.83
USP28-214ENST00000545540 M0R378 163 aa9.85□□□□□ -0.83
USP28-214ENST00000545540 EGFEM1PQ0D2K5 195 aa9.85□□□□□ -0.83
USP28-214ENST00000545540 SYCNQ0VAF6 134 aa9.85□□□□□ -0.83
USP28-214ENST00000545540 A0A0G2JQZ4 141 aa9.84□□□□□ -0.83
USP28-214ENST00000545540 A0A1W2PNN7 141 aa9.84□□□□□ -0.83
USP28-214ENST00000545540 J3KT08 172 aa9.84□□□□□ -0.83
USP28-214ENST00000545540 RMI2Q96E14 147 aa9.84□□□□□ -0.83
USP28-214ENST00000545540 COL7A1Q02388 2944 aa9.84□□□□□ -0.83
USP28-214ENST00000545540 NKAPP1Q8N9T2 125 aa9.84□□□□□ -0.83
USP28-214ENST00000545540 TM2D3Q9BRN9 247 aa9.84□□□□□ -0.83
USP28-214ENST00000545540 BPY2O14599 106 aa9.83□□□□□ -0.84
USP28-214ENST00000545540 LINC00528Q8N1L1 170 aa9.83□□□□□ -0.84
USP28-214ENST00000545540 ATP5EP2Q5VTU8 51 aa9.82□□□□□ -0.84
USP28-214ENST00000545540 C7orf33Q8WU49 177 aa9.82□□□□□ -0.84
USP28-214ENST00000545540 DNAH10Q8IVF4 4471 aa9.82□□□□□ -0.84
USP28-214ENST00000545540 TRBV7-4A0A0J9YYF1 115 aa9.82□□□□□ -0.84
USP28-214ENST00000545540 KRTAP24-1Q3LI83 254 aa9.82□□□□□ -0.84
USP28-214ENST00000545540 ST20-AS1Q8NBB2 130 aa9.82□□□□□ -0.84
USP28-214ENST00000545540 CMYA5Q8N3K9 4069 aa9.8□□□□□ -0.84
USP28-214ENST00000545540 TMEM258P61165 79 aa9.79□□□□□ -0.84
USP28-214ENST00000545540 C4orf26Q17RF5 130 aa9.77□□□□□ -0.85
USP28-214ENST00000545540 Q8N377 158 aa9.77□□□□□ -0.85
USP28-214ENST00000545540 LINC01556Q5JQF7 62 aa9.76□□□□□ -0.85
USP28-214ENST00000545540 LINC00588Q9Y4M8 146 aa9.76□□□□□ -0.85
USP28-214ENST00000545540 NREPQ16612 68 aa9.75□□□□□ -0.85
USP28-214ENST00000545540 ERC2-IT1O76042 136 aa9.75□□□□□ -0.85
USP28-214ENST00000545540 Q9BRP9 147 aa9.74□□□□□ -0.85
USP28-214ENST00000545540 F8WEM9 126 aa9.73□□□□□ -0.85
USP28-214ENST00000545540 IGKV2-24A0A0C4DH68 120 aa9.73□□□□□ -0.85
USP28-214ENST00000545540 WIPF1O43516 503 aa9.73□□□□□ -0.85
USP28-214ENST00000545540 KRTAP7-1Q8IUC3 87 aa9.73□□□□□ -0.85
USP28-214ENST00000545540 TRAV7A0A075B6U4 112 aa9.73□□□□□ -0.85
USP28-214ENST00000545540 H7BZZ5 65 aa9.73□□□□□ -0.85
USP28-214ENST00000545540 PDE6GP18545 87 aa9.72□□□□□ -0.85
USP28-214ENST00000545540 DEFB116Q30KQ4 102 aa9.72□□□□□ -0.85
USP28-214ENST00000545540 HRCT1Q6UXD1 115 aa9.71□□□□□ -0.85
USP28-214ENST00000545540 CXCL6P80162 114 aa9.71□□□□□ -0.86
USP28-214ENST00000545540 ETDCA0A1B0GVM5 59 aa9.7□□□□□ -0.86
USP28-214ENST00000545540 H3BNG1 76 aa9.7□□□□□ -0.86
USP28-214ENST00000545540 UBE2BP63146 152 aa9.7□□□□□ -0.86
USP28-214ENST00000545540 TRBV7-6A0A0J9YX20 115 aa9.69□□□□□ -0.86
USP28-214ENST00000545540 FAM236DA0A1B0GTK5 79 aa9.69□□□□□ -0.86
USP28-214ENST00000545540 FAM236CP0DP71 79 aa9.69□□□□□ -0.86
USP28-214ENST00000545540 KCNQ1DNQ9H478 68 aa9.69□□□□□ -0.86
USP28-214ENST00000545540 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.67□□□□□ -0.86
USP28-214ENST00000545540 IGKV4-1P06312 121 aa9.67□□□□□ -0.86
USP28-214ENST00000545540 A0A1W2PNM2 257 aa9.67□□□□□ -0.86
USP28-214ENST00000545540 HUWE1Q7Z6Z7 4374 aaKnown RBP9.67□□□□□ -0.86
USP28-214ENST00000545540 FAM30AQ9NZY2 134 aa9.66□□□□□ -0.86
USP28-214ENST00000545540 DNAH10OSP0CZ25 163 aa9.66□□□□□ -0.86
USP28-214ENST00000545540 Q6ZRX8 168 aa9.66□□□□□ -0.86
USP28-214ENST00000545540 RPS28P62857 69 aaKnown RBP9.65□□□□□ -0.86
USP28-214ENST00000545540 PRLHP81277 87 aa9.65□□□□□ -0.86
USP28-214ENST00000545540 IGLV1-50A0A075B6I6 118 aa9.65□□□□□ -0.87
USP28-214ENST00000545540 C1orf137Q5JT78 98 aa9.65□□□□□ -0.87
USP28-214ENST00000545540 DNAH9Q9NYC9 4486 aa9.63□□□□□ -0.87
USP28-214ENST00000545540 Q5XG85 94 aa9.63□□□□□ -0.87
USP28-214ENST00000545540 MRPL55Q7Z7F7 128 aaKnown RBP9.62□□□□□ -0.87
USP28-214ENST00000545540 HIGD2AQ9BW72 106 aa9.62□□□□□ -0.87
USP28-214ENST00000545540 SMIM29Q86T20 159 aa9.62□□□□□ -0.87
USP28-214ENST00000545540 H3BQ85 93 aa9.61□□□□□ -0.87
USP28-214ENST00000545540 TMEM254Q8TBM7 123 aa9.61□□□□□ -0.87
USP28-214ENST00000545540 KRTAP1-5Q9BYS1 174 aa9.61□□□□□ -0.87
USP28-214ENST00000545540 LINC00474Q9P2X8 69 aa9.61□□□□□ -0.87
USP28-214ENST00000545540 CHTF8P0CG12 524 aa9.6□□□□□ -0.87
USP28-214ENST00000545540 FUSP35637 526 aaKnown RBP eCLIP9.6□□□□□ -0.87
USP28-214ENST00000545540 DNAH7Q8WXX0 4024 aa9.6□□□□□ -0.87
USP28-214ENST00000545540 A0A096LNI7 61 aa9.6□□□□□ -0.87
USP28-214ENST00000545540 KLKP1Q107X0 134 aa9.6□□□□□ -0.87
USP28-214ENST00000545540 KRTAP4-16G5E9R7 235 aaPredicted RBP9.6□□□□□ -0.87
USP28-214ENST00000545540 K7EIL1 84 aa9.57□□□□□ -0.88
USP28-214ENST00000545540 DNAH1Q9P2D7 4330 aa9.57□□□□□ -0.88
USP28-214ENST00000545540 IGLV5-48A0A075B6I7 105 aa9.57□□□□□ -0.88
USP28-214ENST00000545540 DHRS4-AS1Q9P1J3 65 aa9.57□□□□□ -0.88
USP28-214ENST00000545540 LRCOL1A6NCL2 159 aa9.56□□□□□ -0.88
USP28-214ENST00000545540 K7EQZ3 153 aa9.56□□□□□ -0.88
USP28-214ENST00000545540 PSCAO43653 123 aa9.56□□□□□ -0.88
USP28-214ENST00000545540 DNAH3Q8TD57 4116 aa9.55□□□□□ -0.88
USP28-214ENST00000545540 PRR4Q16378 134 aa9.55□□□□□ -0.88
USP28-214ENST00000545540 REG3GQ6UW15 175 aa9.54□□□□□ -0.88
USP28-214ENST00000545540 OCR1Q9BZK8 76 aa9.54□□□□□ -0.88
USP28-214ENST00000545540 KRTAP11-1Q8IUC1 163 aa9.54□□□□□ -0.88
USP28-214ENST00000545540 RPL37AP61513 92 aaKnown RBP9.53□□□□□ -0.88
USP28-214ENST00000545540 LINC00476Q8WZB0 136 aa9.53□□□□□ -0.88
USP28-214ENST00000545540 TLX1NBP0CAT3 122 aa9.53□□□□□ -0.88
USP28-214ENST00000545540 FAM229BQ4G0N7 80 aa9.53□□□□□ -0.88
USP28-214ENST00000545540 MPLKIPQ8TAP9 179 aa9.53□□□□□ -0.88
USP28-214ENST00000545540 PRYO14603 147 aa9.52□□□□□ -0.89
USP28-214ENST00000545540 Q8NBF4 154 aa9.52□□□□□ -0.89
USP28-214ENST00000545540 C5orf47Q569G3 176 aa9.52□□□□□ -0.89
USP28-214ENST00000545540 SPRR1AP35321 89 aa9.52□□□□□ -0.89
USP28-214ENST00000545540 DSCR10P59022 87 aa9.52□□□□□ -0.89
USP28-214ENST00000545540 EPM2AB3EWF7 344 aa9.51□□□□□ -0.89
USP28-214ENST00000545540 PHF5AQ7RTV0 110 aaKnown RBP9.51□□□□□ -0.89
USP28-214ENST00000545540 WFDC13Q8IUB5 93 aa9.51□□□□□ -0.89
USP28-214ENST00000545540 TNP2Q05952 138 aa9.51□□□□□ -0.89
USP28-214ENST00000545540 SERP1Q9Y6X1 66 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms