RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 IGLV9-49A0A0B4J1Y8 123 aa9.73□□□□□ -0.85
LIMS1-215ENST00000544547 PLAC8L1A1L4L8 177 aa9.72□□□□□ -0.85
LIMS1-215ENST00000544547 HRNRQ86YZ3 2850 aaPredicted RBP9.72□□□□□ -0.85
LIMS1-215ENST00000544547 C22orf24Q9Y442 160 aa9.71□□□□□ -0.86
LIMS1-215ENST00000544547 DCHS2Q6V1P9 2916 aa9.69□□□□□ -0.86
LIMS1-215ENST00000544547 ZNF706Q9Y5V0 76 aaPredicted RBP9.69□□□□□ -0.86
LIMS1-215ENST00000544547 KIAA0087Q14695 138 aa9.69□□□□□ -0.86
LIMS1-215ENST00000544547 OBSCN-AS1Q96MR7 158 aa9.69□□□□□ -0.86
LIMS1-215ENST00000544547 C16orf95Q9H693 158 aa9.68□□□□□ -0.86
LIMS1-215ENST00000544547 IGSF10Q6WRI0 2623 aa9.68□□□□□ -0.86
LIMS1-215ENST00000544547 Q6ZRU5 148 aa9.67□□□□□ -0.86
LIMS1-215ENST00000544547 CR1P17927 2039 aa9.67□□□□□ -0.86
LIMS1-215ENST00000544547 SVEP1Q4LDE5 3571 aa9.67□□□□□ -0.86
LIMS1-215ENST00000544547 C6orf48Q9UBA6 75 aa9.66□□□□□ -0.86
LIMS1-215ENST00000544547 LYPD5Q6UWN5 251 aa9.66□□□□□ -0.86
LIMS1-215ENST00000544547 A8MUN3 132 aa9.64□□□□□ -0.87
LIMS1-215ENST00000544547 A0A087WSZ3 146 aa9.64□□□□□ -0.87
LIMS1-215ENST00000544547 PCOTHQ58A44 107 aa9.64□□□□□ -0.87
LIMS1-215ENST00000544547 FP248Q71RG6 208 aaPredicted RBP9.64□□□□□ -0.87
LIMS1-215ENST00000544547 CRYBG3Q68DQ2 2970 aa9.63□□□□□ -0.87
LIMS1-215ENST00000544547 A0A096LNT2 108 aa9.62□□□□□ -0.87
LIMS1-215ENST00000544547 HCG22E2RYF7 251 aa9.62□□□□□ -0.87
LIMS1-215ENST00000544547 ELOF1P60002 83 aaKnown RBP9.62□□□□□ -0.87
LIMS1-215ENST00000544547 F8WDY8 70 aa9.62□□□□□ -0.87
LIMS1-215ENST00000544547 NUPR2A6NF83 97 aa9.61□□□□□ -0.87
LIMS1-215ENST00000544547 REG3GQ6UW15 175 aa9.6□□□□□ -0.87
LIMS1-215ENST00000544547 IGLV6-57P01721 117 aa9.6□□□□□ -0.87
LIMS1-215ENST00000544547 C1orf64Q8NEQ6 169 aa9.6□□□□□ -0.87
LIMS1-215ENST00000544547 H0Y9P7 68 aa9.6□□□□□ -0.87
LIMS1-215ENST00000544547 FSHBP01225 129 aa9.59□□□□□ -0.87
LIMS1-215ENST00000544547 FAM229BQ4G0N7 80 aa9.57□□□□□ -0.88
LIMS1-215ENST00000544547 LINC00167Q96N53 147 aa9.57□□□□□ -0.88
LIMS1-215ENST00000544547 HELZ2Q9BYK8 2649 aaKnown RBP9.57□□□□□ -0.88
LIMS1-215ENST00000544547 CIRBP-AS1Q8TBR5 109 aa9.56□□□□□ -0.88
LIMS1-215ENST00000544547 UTP20O75691 2785 aaKnown RBP9.56□□□□□ -0.88
LIMS1-215ENST00000544547 TRBV7-4A0A0J9YYF1 115 aa9.56□□□□□ -0.88
LIMS1-215ENST00000544547 UNC79Q9P2D8 2635 aa9.56□□□□□ -0.88
LIMS1-215ENST00000544547 STAB1Q9NY15 2570 aa9.55□□□□□ -0.88
LIMS1-215ENST00000544547 SETXQ7Z333 2677 aaKnown RBP9.55□□□□□ -0.88
LIMS1-215ENST00000544547 CELSR1Q9NYQ6 3014 aa9.55□□□□□ -0.88
LIMS1-215ENST00000544547 GIG44P09565 113 aaPredicted RBP9.55□□□□□ -0.88
LIMS1-215ENST00000544547 ST20-AS1Q8NBB2 130 aa9.55□□□□□ -0.88
LIMS1-215ENST00000544547 SPENQ96T58 3664 aaKnown RBP9.55□□□□□ -0.88
LIMS1-215ENST00000544547 LINC01556Q5JQF7 62 aa9.54□□□□□ -0.88
LIMS1-215ENST00000544547 NF1P21359 2839 aa9.54□□□□□ -0.88
LIMS1-215ENST00000544547 K7ERS5 55 aa9.54□□□□□ -0.88
LIMS1-215ENST00000544547 ERC2-IT1O76042 136 aa9.54□□□□□ -0.88
LIMS1-215ENST00000544547 FBN2P35556 2912 aa9.54□□□□□ -0.88
LIMS1-215ENST00000544547 Q9BRP9 147 aa9.53□□□□□ -0.88
LIMS1-215ENST00000544547 K7EQZ3 153 aa9.53□□□□□ -0.88
LIMS1-215ENST00000544547 IGLV5-52A0A0A0MRZ9 124 aa9.53□□□□□ -0.88
LIMS1-215ENST00000544547 TRAV22A0A0B4J277 110 aa9.53□□□□□ -0.88
LIMS1-215ENST00000544547 PRLHP81277 87 aa9.52□□□□□ -0.89
LIMS1-215ENST00000544547 IGHV6-1A0A0B4J1U7 121 aa9.5□□□□□ -0.89
LIMS1-215ENST00000544547 hDV103S1A0JD37 113 aa9.5□□□□□ -0.89
LIMS1-215ENST00000544547 LIMD2Q9BT23 127 aa9.5□□□□□ -0.89
LIMS1-215ENST00000544547 X6R8D5 127 aa9.5□□□□□ -0.89
LIMS1-215ENST00000544547 VPREB1P12018 145 aa9.5□□□□□ -0.89
LIMS1-215ENST00000544547 RPL37AP61513 92 aaKnown RBP9.5□□□□□ -0.89
LIMS1-215ENST00000544547 Q8NBF4 154 aa9.5□□□□□ -0.89
LIMS1-215ENST00000544547 UBR5O95071 2799 aaPredicted RBP9.5□□□□□ -0.89
LIMS1-215ENST00000544547 A0A0G2JQZ4 141 aa9.49□□□□□ -0.89
LIMS1-215ENST00000544547 A0A1W2PNN7 141 aa9.49□□□□□ -0.89
LIMS1-215ENST00000544547 SPAG11AQ6PDA7 123 aa9.49□□□□□ -0.89
LIMS1-215ENST00000544547 CUBNO60494 3623 aa9.49□□□□□ -0.89
LIMS1-215ENST00000544547 CSNK1G2-AS1Q8NCQ2 148 aa9.48□□□□□ -0.89
LIMS1-215ENST00000544547 Q8NDZ9 215 aa9.48□□□□□ -0.89
LIMS1-215ENST00000544547 LINC00528Q8N1L1 170 aa9.47□□□□□ -0.89
LIMS1-215ENST00000544547 C1orf134Q5TEV5 83 aa9.46□□□□□ -0.89
LIMS1-215ENST00000544547 Q6ZRP5 223 aa9.46□□□□□ -0.9
LIMS1-215ENST00000544547 OCR1Q9BZK8 76 aa9.45□□□□□ -0.9
LIMS1-215ENST00000544547 TEP1Q99973 2627 aaKnown RBP9.45□□□□□ -0.9
LIMS1-215ENST00000544547 C19orf73Q9NVV2 129 aa9.44□□□□□ -0.9
LIMS1-215ENST00000544547 EPM2AB3EWF7 344 aa9.44□□□□□ -0.9
LIMS1-215ENST00000544547 LINC00476Q8WZB0 136 aa9.43□□□□□ -0.9
LIMS1-215ENST00000544547 Q8N377 158 aa9.43□□□□□ -0.9
LIMS1-215ENST00000544547 Q6ZRX8 168 aa9.42□□□□□ -0.9
LIMS1-215ENST00000544547 RETNLBQ9BQ08 111 aa9.41□□□□□ -0.9
LIMS1-215ENST00000544547 MXRA5Q9NR99 2828 aa9.4□□□□□ -0.9
LIMS1-215ENST00000544547 SERTAD4-AS1Q5TG53 156 aa9.4□□□□□ -0.9
LIMS1-215ENST00000544547 CELSR2Q9HCU4 2923 aa9.39□□□□□ -0.91
LIMS1-215ENST00000544547 FAM168BA1KXE4 195 aa9.39□□□□□ -0.91
LIMS1-215ENST00000544547 GVQW2A0A096LPI5 108 aaPredicted RBP9.39□□□□□ -0.91
LIMS1-215ENST00000544547 CD164Q04900 197 aa9.39□□□□□ -0.91
LIMS1-215ENST00000544547 A0A1W2PNM2 257 aa9.37□□□□□ -0.91
LIMS1-215ENST00000544547 NOTCH1P46531 2555 aa9.37□□□□□ -0.91
LIMS1-215ENST00000544547 PRR15Q8IV56 129 aa9.37□□□□□ -0.91
LIMS1-215ENST00000544547 MDFIQ99750 246 aa9.37□□□□□ -0.91
LIMS1-215ENST00000544547 KRTAP24-1Q3LI83 254 aa9.36□□□□□ -0.91
LIMS1-215ENST00000544547 ITPR2Q14571 2701 aa9.36□□□□□ -0.91
LIMS1-215ENST00000544547 SPINK1P00995 79 aa9.35□□□□□ -0.91
LIMS1-215ENST00000544547 A0A1B0GW54 56 aa9.33□□□□□ -0.92
LIMS1-215ENST00000544547 KRTAP1-3Q8IUG1 177 aa9.33□□□□□ -0.92
LIMS1-215ENST00000544547 COA5Q86WW8 74 aa9.33□□□□□ -0.92
LIMS1-215ENST00000544547 H3BNG1 76 aa9.32□□□□□ -0.92
LIMS1-215ENST00000544547 Q8NAQ8 132 aa9.32□□□□□ -0.92
LIMS1-215ENST00000544547 KRTAP10-3P60369 221 aa9.31□□□□□ -0.92
LIMS1-215ENST00000544547 KCNQ1DNQ9H478 68 aa9.31□□□□□ -0.92
LIMS1-215ENST00000544547 PRR34Q9NV39 138 aa9.31□□□□□ -0.92
LIMS1-215ENST00000544547 Q1T7F1 81 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms