RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 M0R2N4 97 aa9.26□□□□□ -0.93
VPS33A-209ENST00000544349 WWC2-AS2Q96NR7 200 aa9.26□□□□□ -0.93
VPS33A-209ENST00000544349 Q6ZRN7 208 aaPredicted RBP9.25□□□□□ -0.93
VPS33A-209ENST00000544349 ELOF1P60002 83 aaKnown RBP9.23□□□□□ -0.93
VPS33A-209ENST00000544349 C14orf177Q52M58 125 aa9.23□□□□□ -0.93
VPS33A-209ENST00000544349 Q6ZQT0 140 aa9.23□□□□□ -0.93
VPS33A-209ENST00000544349 LAMTOR3Q9UHA4 124 aa9.23□□□□□ -0.93
VPS33A-209ENST00000544349 TENM2Q9NT68 2774 aa9.23□□□□□ -0.93
VPS33A-209ENST00000544349 COX7BP24311 80 aa9.23□□□□□ -0.93
VPS33A-209ENST00000544349 LRCOL1A6NCL2 159 aa9.22□□□□□ -0.93
VPS33A-209ENST00000544349 CNBPP62633 177 aaKnown RBP9.22□□□□□ -0.93
VPS33A-209ENST00000544349 M0R378 163 aa9.22□□□□□ -0.93
VPS33A-209ENST00000544349 RBM3P98179 157 aaKnown RBP9.22□□□□□ -0.93
VPS33A-209ENST00000544349 TGP01266 2768 aa9.21□□□□□ -0.93
VPS33A-209ENST00000544349 LOC107984640A0A0U1RRK4 108 aa9.21□□□□□ -0.94
VPS33A-209ENST00000544349 VPS13DQ5THJ4 4388 aa9.21□□□□□ -0.94
VPS33A-209ENST00000544349 LOC110117498A0A087WWA1 95 aa9.2□□□□□ -0.94
VPS33A-209ENST00000544349 Q6ZR54 194 aa9.2□□□□□ -0.94
VPS33A-209ENST00000544349 PLA2G2DQ9UNK4 145 aa9.2□□□□□ -0.94
VPS33A-209ENST00000544349 DNAH10Q8IVF4 4471 aa9.2□□□□□ -0.94
VPS33A-209ENST00000544349 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.19□□□□□ -0.94
VPS33A-209ENST00000544349 SERTAD4-AS1Q5TG53 156 aa9.19□□□□□ -0.94
VPS33A-209ENST00000544349 LINC00528Q8N1L1 170 aa9.18□□□□□ -0.94
VPS33A-209ENST00000544349 C3orf22Q8N5N4 141 aa9.18□□□□□ -0.94
VPS33A-209ENST00000544349 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.17□□□□□ -0.94
VPS33A-209ENST00000544349 TRBV7-6A0A0J9YX20 115 aa9.17□□□□□ -0.94
VPS33A-209ENST00000544349 LY6G6CO95867 125 aa9.17□□□□□ -0.94
VPS33A-209ENST00000544349 ATOX1O00244 68 aa9.16□□□□□ -0.94
VPS33A-209ENST00000544349 FAM19A1Q7Z5A9 133 aa9.16□□□□□ -0.94
VPS33A-209ENST00000544349 NKAPP1Q8N9T2 125 aa9.16□□□□□ -0.94
VPS33A-209ENST00000544349 FAM168BA1KXE4 195 aa9.16□□□□□ -0.94
VPS33A-209ENST00000544349 IGLV5-37A0A075B6J1 123 aa9.15□□□□□ -0.94
VPS33A-209ENST00000544349 UQCRQO14949 82 aa9.15□□□□□ -0.94
VPS33A-209ENST00000544349 C9orf153Q5TBE3 101 aa9.15□□□□□ -0.94
VPS33A-209ENST00000544349 LINC00476Q8WZB0 136 aa9.15□□□□□ -0.94
VPS33A-209ENST00000544349 COX7CP15954 63 aa9.14□□□□□ -0.95
VPS33A-209ENST00000544349 ATP5EP2Q5VTU8 51 aa9.14□□□□□ -0.95
VPS33A-209ENST00000544349 C7orf33Q8WU49 177 aa9.14□□□□□ -0.95
VPS33A-209ENST00000544349 DSCR8Q96T75 97 aa9.14□□□□□ -0.95
VPS33A-209ENST00000544349 UBL5Q9BZL1 73 aa9.14□□□□□ -0.95
VPS33A-209ENST00000544349 C16orf90A8MZG2 172 aa9.14□□□□□ -0.95
VPS33A-209ENST00000544349 C3orf84H3BNL1 204 aa9.14□□□□□ -0.95
VPS33A-209ENST00000544349 KRTAP7-1Q8IUC3 87 aa9.14□□□□□ -0.95
VPS33A-209ENST00000544349 A0A096LNI7 61 aa9.13□□□□□ -0.95
VPS33A-209ENST00000544349 TRBV7-4A0A0J9YYF1 115 aa9.13□□□□□ -0.95
VPS33A-209ENST00000544349 C9orf163Q8N9P6 203 aa9.13□□□□□ -0.95
VPS33A-209ENST00000544349 A0A087WTM6 91 aa9.13□□□□□ -0.95
VPS33A-209ENST00000544349 CYSTM1Q9H1C7 97 aa9.12□□□□□ -0.95
VPS33A-209ENST00000544349 Q6ZVQ6 151 aa9.11□□□□□ -0.95
VPS33A-209ENST00000544349 H3BQ85 93 aa9.11□□□□□ -0.95
VPS33A-209ENST00000544349 C1orf134Q5TEV5 83 aa9.11□□□□□ -0.95
VPS33A-209ENST00000544349 IGKV2-24A0A0C4DH68 120 aa9.1□□□□□ -0.95
VPS33A-209ENST00000544349 FAM19A5Q7Z5A7 132 aaPredicted RBP9.1□□□□□ -0.95
VPS33A-209ENST00000544349 KCNQ1DNQ9H478 68 aa9.1□□□□□ -0.95
VPS33A-209ENST00000544349 KMT2AQ03164 3969 aa9.1□□□□□ -0.95
VPS33A-209ENST00000544349 LINC01547P58512 204 aaPredicted RBP9.09□□□□□ -0.95
VPS33A-209ENST00000544349 RPL37AP8A6NKH3 93 aa9.08□□□□□ -0.96
VPS33A-209ENST00000544349 PKIGQ9Y2B9 76 aa9.08□□□□□ -0.96
VPS33A-209ENST00000544349 IGLV1-50A0A075B6I6 118 aa9.08□□□□□ -0.96
VPS33A-209ENST00000544349 MRPL55Q7Z7F7 128 aaKnown RBP9.08□□□□□ -0.96
VPS33A-209ENST00000544349 PDE6GP18545 87 aa9.07□□□□□ -0.96
VPS33A-209ENST00000544349 SERP2Q8N6R1 65 aa9.07□□□□□ -0.96
VPS33A-209ENST00000544349 A0A1W2PNN7 141 aa9.07□□□□□ -0.96
VPS33A-209ENST00000544349 CHTF8P0CG12 524 aa9.06□□□□□ -0.96
VPS33A-209ENST00000544349 CRYGAP11844 174 aa9.06□□□□□ -0.96
VPS33A-209ENST00000544349 HAMPP81172 84 aa9.06□□□□□ -0.96
VPS33A-209ENST00000544349 GHRHP01286 108 aa9.05□□□□□ -0.96
VPS33A-209ENST00000544349 SCXQ7RTU7 201 aa9.05□□□□□ -0.96
VPS33A-209ENST00000544349 PRYO14603 147 aa9.05□□□□□ -0.96
VPS33A-209ENST00000544349 KRTAP4-16G5E9R7 235 aaPredicted RBP9.04□□□□□ -0.96
VPS33A-209ENST00000544349 Q9BRP9 147 aa9.04□□□□□ -0.96
VPS33A-209ENST00000544349 DEFB105AQ8NG35 78 aa9.04□□□□□ -0.96
VPS33A-209ENST00000544349 Q6ZRX8 168 aa9.03□□□□□ -0.96
VPS33A-209ENST00000544349 Q8N377 158 aa9.03□□□□□ -0.96
VPS33A-209ENST00000544349 SMIM20Q8N5G0 67 aa9.03□□□□□ -0.96
VPS33A-209ENST00000544349 SPRR1AP35321 89 aa9.02□□□□□ -0.96
VPS33A-209ENST00000544349 LINC00474Q9P2X8 69 aa9.02□□□□□ -0.96
VPS33A-209ENST00000544349 DNAH6Q9C0G6 4158 aa9.02□□□□□ -0.97
VPS33A-209ENST00000544349 RTL8CO15255 209 aa9.02□□□□□ -0.97
VPS33A-209ENST00000544349 FUSP35637 526 aaKnown RBP eCLIP9.01□□□□□ -0.97
VPS33A-209ENST00000544349 ALMS1Q8TCU4 4167 aa9□□□□□ -0.97
VPS33A-209ENST00000544349 PANO1I0J062 215 aa9□□□□□ -0.97
VPS33A-209ENST00000544349 CXCL6P80162 114 aa9□□□□□ -0.97
VPS33A-209ENST00000544349 TNP2Q05952 138 aa9□□□□□ -0.97
VPS33A-209ENST00000544349 ST20-AS1Q8NBB2 130 aa9□□□□□ -0.97
VPS33A-209ENST00000544349 DNAH2Q9P225 4427 aa8.99□□□□□ -0.97
VPS33A-209ENST00000544349 ETDCA0A1B0GVM5 59 aa8.98□□□□□ -0.97
VPS33A-209ENST00000544349 REG3GQ6UW15 175 aa8.98□□□□□ -0.97
VPS33A-209ENST00000544349 ERC2-IT1O76042 136 aa8.98□□□□□ -0.97
VPS33A-209ENST00000544349 PHF5AQ7RTV0 110 aaKnown RBP8.98□□□□□ -0.97
VPS33A-209ENST00000544349 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.98□□□□□ -0.97
VPS33A-209ENST00000544349 SPACA4Q8TDM5 124 aa8.97□□□□□ -0.97
VPS33A-209ENST00000544349 DHRS4-AS1Q9P1J3 65 aa8.97□□□□□ -0.97
VPS33A-209ENST00000544349 IGLV5-52A0A0A0MRZ9 124 aa8.96□□□□□ -0.97
VPS33A-209ENST00000544349 DPH3Q96FX2 82 aa8.96□□□□□ -0.98
VPS33A-209ENST00000544349 IGLV5-48A0A075B6I7 105 aa8.95□□□□□ -0.98
VPS33A-209ENST00000544349 Q8N9L7 120 aa8.95□□□□□ -0.98
VPS33A-209ENST00000544349 EPM2AB3EWF7 344 aa8.94□□□□□ -0.98
VPS33A-209ENST00000544349 UBE2BP63146 152 aa8.93□□□□□ -0.98
VPS33A-209ENST00000544349 KRTAP11-1Q8IUC1 163 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms