RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 IMUPQ9GZP8 106 aa10.53□□□□□ -0.72
COL4A1-204ENST00000543140 FAM19A5Q7Z5A7 132 aaPredicted RBP10.53□□□□□ -0.72
COL4A1-204ENST00000543140 Q6ZQT0 140 aa10.52□□□□□ -0.73
COL4A1-204ENST00000543140 PLA2G2DQ9UNK4 145 aa10.51□□□□□ -0.73
COL4A1-204ENST00000543140 LOC107984640A0A0U1RRK4 108 aa10.51□□□□□ -0.73
COL4A1-204ENST00000543140 M0R2N4 97 aa10.51□□□□□ -0.73
COL4A1-204ENST00000543140 DSCR8Q96T75 97 aa10.51□□□□□ -0.73
COL4A1-204ENST00000543140 DNAH10Q8IVF4 4471 aa10.49□□□□□ -0.73
COL4A1-204ENST00000543140 DNAH7Q8WXX0 4024 aa10.48□□□□□ -0.73
COL4A1-204ENST00000543140 IGLV1-50A0A075B6I6 118 aa10.48□□□□□ -0.73
COL4A1-204ENST00000543140 LOC110117498A0A087WWA1 95 aa10.48□□□□□ -0.73
COL4A1-204ENST00000543140 H3BQ85 93 aa10.48□□□□□ -0.73
COL4A1-204ENST00000543140 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.48□□□□□ -0.73
COL4A1-204ENST00000543140 Q6JHZ5 121 aa10.48□□□□□ -0.73
COL4A1-204ENST00000543140 DEFB105AQ8NG35 78 aa10.47□□□□□ -0.73
COL4A1-204ENST00000543140 IGLV5-37A0A075B6J1 123 aa10.47□□□□□ -0.73
COL4A1-204ENST00000543140 IGKV2-24A0A0C4DH68 120 aa10.47□□□□□ -0.73
COL4A1-204ENST00000543140 MRPL55Q7Z7F7 128 aaKnown RBP10.46□□□□□ -0.73
COL4A1-204ENST00000543140 GHRHP01286 108 aa10.46□□□□□ -0.74
COL4A1-204ENST00000543140 SMIM20Q8N5G0 67 aa10.46□□□□□ -0.74
COL4A1-204ENST00000543140 A0A096LNI7 61 aa10.45□□□□□ -0.74
COL4A1-204ENST00000543140 A0A087WVE0 104 aa10.44□□□□□ -0.74
COL4A1-204ENST00000543140 ETDCA0A1B0GVM5 59 aa10.44□□□□□ -0.74
COL4A1-204ENST00000543140 Q6ZRX8 168 aa10.44□□□□□ -0.74
COL4A1-204ENST00000543140 KRTAP4-16G5E9R7 235 aaPredicted RBP10.43□□□□□ -0.74
COL4A1-204ENST00000543140 PRYO14603 147 aa10.43□□□□□ -0.74
COL4A1-204ENST00000543140 Q9BRP9 147 aa10.43□□□□□ -0.74
COL4A1-204ENST00000543140 UBL5Q9BZL1 73 aa10.43□□□□□ -0.74
COL4A1-204ENST00000543140 NUPR2A6NF83 97 aa10.43□□□□□ -0.74
COL4A1-204ENST00000543140 TRBV7-4A0A0J9YYF1 115 aa10.42□□□□□ -0.74
COL4A1-204ENST00000543140 CNBPP62633 177 aaKnown RBP10.42□□□□□ -0.74
COL4A1-204ENST00000543140 HIST1H4AP62805 103 aaKnown RBP10.41□□□□□ -0.74
COL4A1-204ENST00000543140 PDE6GP18545 87 aa10.41□□□□□ -0.74
COL4A1-204ENST00000543140 SPRR1AP35321 89 aa10.41□□□□□ -0.74
COL4A1-204ENST00000543140 MEGF8Q7Z7M0 2845 aa10.41□□□□□ -0.74
COL4A1-204ENST00000543140 NBDYA0A0U1RRE5 68 aa10.4□□□□□ -0.75
COL4A1-204ENST00000543140 C16orf90A8MZG2 172 aa10.4□□□□□ -0.75
COL4A1-204ENST00000543140 Q8N377 158 aa10.4□□□□□ -0.75
COL4A1-204ENST00000543140 A0A1W2PNN7 141 aa10.39□□□□□ -0.75
COL4A1-204ENST00000543140 C3orf22Q8N5N4 141 aa10.39□□□□□ -0.75
COL4A1-204ENST00000543140 DHRS4-AS1Q9P1J3 65 aa10.39□□□□□ -0.75
COL4A1-204ENST00000543140 ST20-AS1Q8NBB2 130 aa10.39□□□□□ -0.75
COL4A1-204ENST00000543140 C9orf153Q5TBE3 101 aa10.38□□□□□ -0.75
COL4A1-204ENST00000543140 PRKDCP78527 4128 aaKnown RBP10.38□□□□□ -0.75
COL4A1-204ENST00000543140 CHTF8P0CG12 524 aa10.38□□□□□ -0.75
COL4A1-204ENST00000543140 DYNC2H1Q8NCM8 4307 aaKnown RBP10.37□□□□□ -0.75
COL4A1-204ENST00000543140 ERC2-IT1O76042 136 aa10.37□□□□□ -0.75
COL4A1-204ENST00000543140 LINC01547P58512 204 aaPredicted RBP10.37□□□□□ -0.75
COL4A1-204ENST00000543140 UBE2BP63146 152 aa10.37□□□□□ -0.75
COL4A1-204ENST00000543140 REG3GQ6UW15 175 aa10.37□□□□□ -0.75
COL4A1-204ENST00000543140 Q6ZVQ6 151 aa10.37□□□□□ -0.75
COL4A1-204ENST00000543140 FAM19A1Q7Z5A9 133 aa10.37□□□□□ -0.75
COL4A1-204ENST00000543140 PLECQ15149 4684 aaKnown RBP10.36□□□□□ -0.75
COL4A1-204ENST00000543140 HAMPP81172 84 aa10.36□□□□□ -0.75
COL4A1-204ENST00000543140 C14orf177Q52M58 125 aa10.36□□□□□ -0.75
COL4A1-204ENST00000543140 CYSTM1Q9H1C7 97 aa10.36□□□□□ -0.75
COL4A1-204ENST00000543140 LRCOL1A6NCL2 159 aa10.35□□□□□ -0.75
COL4A1-204ENST00000543140 ATP5EP2Q5VTU8 51 aa10.35□□□□□ -0.75
COL4A1-204ENST00000543140 Q6ZRN7 208 aaPredicted RBP10.32□□□□□ -0.76
COL4A1-204ENST00000543140 PRLHP81277 87 aa10.31□□□□□ -0.76
COL4A1-204ENST00000543140 STARD9Q9P2P6 4700 aa10.3□□□□□ -0.76
COL4A1-204ENST00000543140 UQCRQO14949 82 aa10.3□□□□□ -0.76
COL4A1-204ENST00000543140 ATOX1O00244 68 aa10.3□□□□□ -0.76
COL4A1-204ENST00000543140 SCXQ7RTU7 201 aa10.3□□□□□ -0.76
COL4A1-204ENST00000543140 PHF5AQ7RTV0 110 aaKnown RBP10.3□□□□□ -0.76
COL4A1-204ENST00000543140 C9orf163Q8N9P6 203 aa10.3□□□□□ -0.76
COL4A1-204ENST00000543140 COX7CP15954 63 aa10.29□□□□□ -0.76
COL4A1-204ENST00000543140 KRTAP11-1Q8IUC1 163 aa10.29□□□□□ -0.76
COL4A1-204ENST00000543140 IGLV5-48A0A075B6I7 105 aa10.28□□□□□ -0.76
COL4A1-204ENST00000543140 C3orf84H3BNL1 204 aa10.28□□□□□ -0.76
COL4A1-204ENST00000543140 FUSP35637 526 aaKnown RBP eCLIP10.26□□□□□ -0.77
COL4A1-204ENST00000543140 SRRM2Q9UQ35 2752 aaKnown RBP10.26□□□□□ -0.77
COL4A1-204ENST00000543140 PANO1I0J062 215 aa10.26□□□□□ -0.77
COL4A1-204ENST00000543140 HIGD2AQ9BW72 106 aa10.26□□□□□ -0.77
COL4A1-204ENST00000543140 SVIPQ8NHG7 77 aa10.25□□□□□ -0.77
COL4A1-204ENST00000543140 DPH3Q96FX2 82 aa10.25□□□□□ -0.77
COL4A1-204ENST00000543140 TGP01266 2768 aa10.25□□□□□ -0.77
COL4A1-204ENST00000543140 DNHD1Q96M86 4753 aa10.25□□□□□ -0.77
COL4A1-204ENST00000543140 C1orf137Q5JT78 98 aa10.24□□□□□ -0.77
COL4A1-204ENST00000543140 CXCL6P80162 114 aa10.23□□□□□ -0.77
COL4A1-204ENST00000543140 TNP2Q05952 138 aa10.23□□□□□ -0.77
COL4A1-204ENST00000543140 A0A1W2PNM2 257 aa10.22□□□□□ -0.77
COL4A1-204ENST00000543140 NREPQ16612 68 aa10.21□□□□□ -0.77
COL4A1-204ENST00000543140 SMIM29Q86T20 159 aa10.21□□□□□ -0.77
COL4A1-204ENST00000543140 A0A0G2JQZ4 141 aa10.2□□□□□ -0.78
COL4A1-204ENST00000543140 SERP2Q8N6R1 65 aa10.2□□□□□ -0.78
COL4A1-204ENST00000543140 A0A087WTM6 91 aa10.19□□□□□ -0.78
COL4A1-204ENST00000543140 EPM2AB3EWF7 344 aa10.18□□□□□ -0.78
COL4A1-204ENST00000543140 CRYGAP11844 174 aa10.18□□□□□ -0.78
COL4A1-204ENST00000543140 Q8N9L7 120 aa10.18□□□□□ -0.78
COL4A1-204ENST00000543140 LINC00474Q9P2X8 69 aa10.18□□□□□ -0.78
COL4A1-204ENST00000543140 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.18□□□□□ -0.78
COL4A1-204ENST00000543140 VPS13DQ5THJ4 4388 aa10.17□□□□□ -0.78
COL4A1-204ENST00000543140 FBN3Q75N90 2809 aa10.17□□□□□ -0.78
COL4A1-204ENST00000543140 F8WEM9 126 aa10.16□□□□□ -0.78
COL4A1-204ENST00000543140 LINC00476Q8WZB0 136 aa10.16□□□□□ -0.78
COL4A1-204ENST00000543140 KMT2AQ03164 3969 aa10.16□□□□□ -0.78
COL4A1-204ENST00000543140 Q8NBF4 154 aa10.15□□□□□ -0.78
COL4A1-204ENST00000543140 PKIGQ9Y2B9 76 aa10.15□□□□□ -0.78
COL4A1-204ENST00000543140 Q6ZR54 194 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 165.7 ms