RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 C14orf144Q96I85 54 aa11.38□□□□□ -0.59
VPS33A-205ENST00000541169 TRAV23DV6A0A075B6W5 121 aa11.37□□□□□ -0.59
VPS33A-205ENST00000541169 TRAV13-2A0A0B4J235 113 aa11.36□□□□□ -0.59
VPS33A-205ENST00000541169 HIST1H4GQ99525 98 aa11.36□□□□□ -0.59
VPS33A-205ENST00000541169 KRTAP4-16G5E9R7 235 aaPredicted RBP11.35□□□□□ -0.59
VPS33A-205ENST00000541169 ZNF73O43830 326 aaPredicted RBP11.34□□□□□ -0.59
VPS33A-205ENST00000541169 PRLHP81277 87 aa11.33□□□□□ -0.6
VPS33A-205ENST00000541169 TAL2Q16559 108 aa11.32□□□□□ -0.6
VPS33A-205ENST00000541169 A6NDN8 102 aa11.31□□□□□ -0.6
VPS33A-205ENST00000541169 Q6ZRX8 168 aa11.31□□□□□ -0.6
VPS33A-205ENST00000541169 ZNF706Q9Y5V0 76 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-205ENST00000541169 B5MCH6 92 aa11.3□□□□□ -0.6
VPS33A-205ENST00000541169 RPL13AP40429 203 aaKnown RBP11.3□□□□□ -0.6
VPS33A-205ENST00000541169 HIGD2AQ9BW72 106 aa11.3□□□□□ -0.6
VPS33A-205ENST00000541169 TRBV7-6A0A0J9YX20 115 aa11.29□□□□□ -0.6
VPS33A-205ENST00000541169 A4D1N5 150 aa11.28□□□□□ -0.6
VPS33A-205ENST00000541169 SMIM6P0DI80 62 aa11.28□□□□□ -0.6
VPS33A-205ENST00000541169 DMBT1Q9UGM3 2413 aaPredicted RBP11.27□□□□□ -0.6
VPS33A-205ENST00000541169 KRTAP1-4P0C5Y4 121 aa11.27□□□□□ -0.61
VPS33A-205ENST00000541169 UQCR10Q9UDW1 63 aa11.27□□□□□ -0.61
VPS33A-205ENST00000541169 FAM229BQ4G0N7 80 aa11.26□□□□□ -0.61
VPS33A-205ENST00000541169 C2orf91Q6ZV80 131 aa11.26□□□□□ -0.61
VPS33A-205ENST00000541169 TMEM238LA0A1B0GVL6 79 aa11.25□□□□□ -0.61
VPS33A-205ENST00000541169 A6NJY4 79 aa11.25□□□□□ -0.61
VPS33A-205ENST00000541169 KRTAP10-8P60410 259 aa11.25□□□□□ -0.61
VPS33A-205ENST00000541169 MT1HL1P0DM35 61 aa11.24□□□□□ -0.61
VPS33A-205ENST00000541169 CRYGAP11844 174 aa11.24□□□□□ -0.61
VPS33A-205ENST00000541169 DHRS4-AS1Q9P1J3 65 aa11.24□□□□□ -0.61
VPS33A-205ENST00000541169 MYCBP2O75592 4640 aa11.23□□□□□ -0.61
VPS33A-205ENST00000541169 SMCR5Q8TEV8 140 aa11.23□□□□□ -0.61
VPS33A-205ENST00000541169 A0A1B0GWB2 263 aa11.22□□□□□ -0.61
VPS33A-205ENST00000541169 ELOF1P60002 83 aaKnown RBP11.22□□□□□ -0.61
VPS33A-205ENST00000541169 C6orf99Q4VX62 202 aa11.22□□□□□ -0.61
VPS33A-205ENST00000541169 CEND1Q8N111 149 aa11.22□□□□□ -0.61
VPS33A-205ENST00000541169 COX7BP24311 80 aa11.21□□□□□ -0.61
VPS33A-205ENST00000541169 VAMP3Q15836 100 aa11.21□□□□□ -0.61
VPS33A-205ENST00000541169 PKHD1L1Q86WI1 4243 aa11.2□□□□□ -0.62
VPS33A-205ENST00000541169 HSD52Q0P140 79 aa11.2□□□□□ -0.62
VPS33A-205ENST00000541169 Q9BRP9 147 aa11.2□□□□□ -0.62
VPS33A-205ENST00000541169 A0A0B4J2C4 111 aa11.19□□□□□ -0.62
VPS33A-205ENST00000541169 PRR26Q8N8Z3 221 aa11.19□□□□□ -0.62
VPS33A-205ENST00000541169 SPRR4Q96PI1 79 aa11.19□□□□□ -0.62
VPS33A-205ENST00000541169 SMIM11BQ8TCY0 68 aa11.18□□□□□ -0.62
VPS33A-205ENST00000541169 RAB37Q96AX2 223 aa11.18□□□□□ -0.62
VPS33A-205ENST00000541169 NHP2Q9NX24 153 aaKnown RBP11.18□□□□□ -0.62
VPS33A-205ENST00000541169 CFC1BP0CG36 223 aa11.16□□□□□ -0.62
VPS33A-205ENST00000541169 CFC1P0CG37 223 aa11.16□□□□□ -0.62
VPS33A-205ENST00000541169 LOC105371267A0A1B0GV96 52 aa11.15□□□□□ -0.62
VPS33A-205ENST00000541169 BVES-AS1Q5T3Y7 98 aa11.15□□□□□ -0.62
VPS33A-205ENST00000541169 LINC00483Q53H64 154 aa11.14□□□□□ -0.63
VPS33A-205ENST00000541169 C12orf57Q99622 126 aa11.14□□□□□ -0.63
VPS33A-205ENST00000541169 SLC25A20O43772 301 aa11.13□□□□□ -0.63
VPS33A-205ENST00000541169 TYMSOSQ8TAI1 123 aa11.13□□□□□ -0.63
VPS33A-205ENST00000541169 A0A087X002 238 aa11.12□□□□□ -0.63
VPS33A-205ENST00000541169 ERC2-IT1O76042 136 aa11.12□□□□□ -0.63
VPS33A-205ENST00000541169 PRO1854Q9UHT4 67 aa11.12□□□□□ -0.63
VPS33A-205ENST00000541169 LRP1Q07954 4544 aaKnown RBP11.11□□□□□ -0.63
VPS33A-205ENST00000541169 CTAG1AP78358 180 aa11.1□□□□□ -0.63
VPS33A-205ENST00000541169 GAGE2AQ6NT46 116 aa11.1□□□□□ -0.63
VPS33A-205ENST00000541169 SNCGO76070 127 aa11.09□□□□□ -0.63
VPS33A-205ENST00000541169 ANAPC11Q9NYG5 84 aa11.09□□□□□ -0.63
VPS33A-205ENST00000541169 TSTD3H0UI37 97 aa11.08□□□□□ -0.64
VPS33A-205ENST00000541169 FXYD2P54710 66 aa11.08□□□□□ -0.64
VPS33A-205ENST00000541169 SPRR1BP22528 89 aa11.07□□□□□ -0.64
VPS33A-205ENST00000541169 H0YGX0 51 aa11.06□□□□□ -0.64
VPS33A-205ENST00000541169 KRTAP13-2Q52LG2 175 aa11.06□□□□□ -0.64
VPS33A-205ENST00000541169 PRO1933Q9H354 126 aa11.06□□□□□ -0.64
VPS33A-205ENST00000541169 FAT3Q8TDW7 4589 aa11.05□□□□□ -0.64
VPS33A-205ENST00000541169 M0R143 59 aa11.05□□□□□ -0.64
VPS33A-205ENST00000541169 Q1RN00 199 aa11.05□□□□□ -0.64
VPS33A-205ENST00000541169 LINC00575Q6W349 94 aa11.05□□□□□ -0.64
VPS33A-205ENST00000541169 H7C2G1 150 aa11.04□□□□□ -0.64
VPS33A-205ENST00000541169 TEX49A0A1B0GTD5 131 aa11.03□□□□□ -0.64
VPS33A-205ENST00000541169 hADV29S1A0JD25 119 aa11.03□□□□□ -0.64
VPS33A-205ENST00000541169 SPAG11AQ6PDA7 123 aa11.03□□□□□ -0.64
VPS33A-205ENST00000541169 SSBP3-AS1Q7Z2R9 100 aa11.02□□□□□ -0.65
VPS33A-205ENST00000541169 ST20-AS1Q8NBB2 130 aa11.02□□□□□ -0.65
VPS33A-205ENST00000541169 LAMTOR3Q9UHA4 124 aa11.02□□□□□ -0.65
VPS33A-205ENST00000541169 IGLV5-48A0A075B6I7 105 aa11.01□□□□□ -0.65
VPS33A-205ENST00000541169 LINC00304Q8N9R0 145 aa11□□□□□ -0.65
VPS33A-205ENST00000541169 GHRHP01286 108 aa10.99□□□□□ -0.65
VPS33A-205ENST00000541169 COX6CP09669 75 aa10.99□□□□□ -0.65
VPS33A-205ENST00000541169 A0A1B0GX51 115 aa10.98□□□□□ -0.65
VPS33A-205ENST00000541169 C4orf48Q5BLP8 95 aa10.98□□□□□ -0.65
VPS33A-205ENST00000541169 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.98□□□□□ -0.65
VPS33A-205ENST00000541169 C3orf22Q8N5N4 141 aa10.98□□□□□ -0.65
VPS33A-205ENST00000541169 PPDPFLQ8WWR9 84 aa10.98□□□□□ -0.65
VPS33A-205ENST00000541169 IGLV9-49A0A0B4J1Y8 123 aa10.97□□□□□ -0.65
VPS33A-205ENST00000541169 OCIAD2Q56VL3 154 aa10.97□□□□□ -0.65
VPS33A-205ENST00000541169 Q8NBF4 154 aa10.96□□□□□ -0.65
VPS33A-205ENST00000541169 DEFB105AQ8NG35 78 aa10.96□□□□□ -0.65
VPS33A-205ENST00000541169 MOBPQ13875 183 aa10.95□□□□□ -0.66
VPS33A-205ENST00000541169 PSMB2P49721 201 aa10.94□□□□□ -0.66
VPS33A-205ENST00000541169 C9orf153Q5TBE3 101 aa10.94□□□□□ -0.66
VPS33A-205ENST00000541169 Q6ZQY7 126 aa10.94□□□□□ -0.66
VPS33A-205ENST00000541169 K7ERJ3 54 aa10.93□□□□□ -0.66
VPS33A-205ENST00000541169 TRIAP1O43715 76 aa10.92□□□□□ -0.66
VPS33A-205ENST00000541169 SPINK1P00995 79 aa10.92□□□□□ -0.66
VPS33A-205ENST00000541169 LINC01547P58512 204 aaPredicted RBP10.92□□□□□ -0.66
VPS33A-205ENST00000541169 TNXBP22105 4242 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 132.8 ms