RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 M0R378 163 aa11.01□□□□□ -0.65
USP28-208ENST00000540438 FUSP35637 526 aaKnown RBP eCLIP11.01□□□□□ -0.65
USP28-208ENST00000540438 TRAV10A0A0B4J240 114 aa11□□□□□ -0.65
USP28-208ENST00000540438 H3BNG1 76 aa11□□□□□ -0.65
USP28-208ENST00000540438 C3orf84H3BNL1 204 aa11□□□□□ -0.65
USP28-208ENST00000540438 SMIM20Q8N5G0 67 aa11□□□□□ -0.65
USP28-208ENST00000540438 KRTAP1-5Q9BYS1 174 aa11□□□□□ -0.65
USP28-208ENST00000540438 ELOF1P60002 83 aaKnown RBP10.99□□□□□ -0.65
USP28-208ENST00000540438 ST20-AS1Q8NBB2 130 aa10.99□□□□□ -0.65
USP28-208ENST00000540438 UBL5Q9BZL1 73 aa10.99□□□□□ -0.65
USP28-208ENST00000540438 IMUPQ9GZP8 106 aa10.98□□□□□ -0.65
USP28-208ENST00000540438 Q6JHZ5 121 aa10.98□□□□□ -0.65
USP28-208ENST00000540438 MDFIQ99750 246 aa10.98□□□□□ -0.65
USP28-208ENST00000540438 DNAH10OSP0CZ25 163 aa10.96□□□□□ -0.65
USP28-208ENST00000540438 MUC7Q8TAX7 377 aa10.96□□□□□ -0.65
USP28-208ENST00000540438 UPK3BQ9BT76 320 aa10.96□□□□□ -0.66
USP28-208ENST00000540438 KRTAP7-1Q8IUC3 87 aa10.95□□□□□ -0.66
USP28-208ENST00000540438 Q6ZVQ6 151 aa10.95□□□□□ -0.66
USP28-208ENST00000540438 LINC00528Q8N1L1 170 aa10.95□□□□□ -0.66
USP28-208ENST00000540438 C2orf48Q96LS8 159 aa10.94□□□□□ -0.66
USP28-208ENST00000540438 ERC2-IT1O76042 136 aa10.93□□□□□ -0.66
USP28-208ENST00000540438 TM2D3Q9BRN9 247 aa10.93□□□□□ -0.66
USP28-208ENST00000540438 GHRHP01286 108 aa10.92□□□□□ -0.66
USP28-208ENST00000540438 CHTF8P0CG12 524 aa10.92□□□□□ -0.66
USP28-208ENST00000540438 LINC01547P58512 204 aaPredicted RBP10.92□□□□□ -0.66
USP28-208ENST00000540438 PSCAO43653 123 aa10.91□□□□□ -0.66
USP28-208ENST00000540438 UBE2DNLQ8IWF7 75 aa10.91□□□□□ -0.66
USP28-208ENST00000540438 PLECQ15149 4684 aaKnown RBP10.9□□□□□ -0.66
USP28-208ENST00000540438 COX7CP15954 63 aa10.89□□□□□ -0.67
USP28-208ENST00000540438 Q9BRP9 147 aa10.89□□□□□ -0.67
USP28-208ENST00000540438 UBE2BP63146 152 aa10.89□□□□□ -0.67
USP28-208ENST00000540438 DNAH1Q9P2D7 4330 aa10.88□□□□□ -0.67
USP28-208ENST00000540438 UQCRQO14949 82 aa10.88□□□□□ -0.67
USP28-208ENST00000540438 LOC107984640A0A0U1RRK4 108 aa10.87□□□□□ -0.67
USP28-208ENST00000540438 ATOX1O00244 68 aa10.87□□□□□ -0.67
USP28-208ENST00000540438 ETDCA0A1B0GVM5 59 aa10.87□□□□□ -0.67
USP28-208ENST00000540438 PRLHP81277 87 aa10.87□□□□□ -0.67
USP28-208ENST00000540438 Q8N377 158 aa10.87□□□□□ -0.67
USP28-208ENST00000540438 MEGF8Q7Z7M0 2845 aa10.86□□□□□ -0.67
USP28-208ENST00000540438 A0A096LNI7 61 aa10.84□□□□□ -0.67
USP28-208ENST00000540438 BPY2O14599 106 aa10.84□□□□□ -0.67
USP28-208ENST00000540438 C20orf197Q8N268 126 aa10.84□□□□□ -0.67
USP28-208ENST00000540438 LOC110117498A0A087WWA1 95 aa10.83□□□□□ -0.68
USP28-208ENST00000540438 TRBV7-4A0A0J9YYF1 115 aa10.83□□□□□ -0.68
USP28-208ENST00000540438 DEFB116Q30KQ4 102 aa10.83□□□□□ -0.68
USP28-208ENST00000540438 KCNQ1DNQ9H478 68 aa10.82□□□□□ -0.68
USP28-208ENST00000540438 PRKDCP78527 4128 aaKnown RBP10.82□□□□□ -0.68
USP28-208ENST00000540438 MRPL55Q7Z7F7 128 aaKnown RBP10.82□□□□□ -0.68
USP28-208ENST00000540438 HIGD2AQ9BW72 106 aa10.82□□□□□ -0.68
USP28-208ENST00000540438 SNURFQ9Y675 71 aa10.82□□□□□ -0.68
USP28-208ENST00000540438 DPH3Q96FX2 82 aa10.82□□□□□ -0.68
USP28-208ENST00000540438 SERP2Q8N6R1 65 aa10.81□□□□□ -0.68
USP28-208ENST00000540438 IGLV1-50A0A075B6I6 118 aa10.81□□□□□ -0.68
USP28-208ENST00000540438 Q6ZRX8 168 aa10.79□□□□□ -0.68
USP28-208ENST00000540438 DNHD1Q96M86 4753 aa10.79□□□□□ -0.68
USP28-208ENST00000540438 KRTAP11-1Q8IUC1 163 aa10.79□□□□□ -0.68
USP28-208ENST00000540438 STARD9Q9P2P6 4700 aa10.78□□□□□ -0.68
USP28-208ENST00000540438 PHF5AQ7RTV0 110 aaKnown RBP10.77□□□□□ -0.69
USP28-208ENST00000540438 NREPQ16612 68 aa10.76□□□□□ -0.69
USP28-208ENST00000540438 KMT2AQ03164 3969 aa10.74□□□□□ -0.69
USP28-208ENST00000540438 RMI2Q96E14 147 aa10.74□□□□□ -0.69
USP28-208ENST00000540438 PANO1I0J062 215 aa10.73□□□□□ -0.69
USP28-208ENST00000540438 A0A1W2PNM2 257 aa10.73□□□□□ -0.69
USP28-208ENST00000540438 KRTAP4-16G5E9R7 235 aaPredicted RBP10.72□□□□□ -0.69
USP28-208ENST00000540438 C1orf137Q5JT78 98 aa10.72□□□□□ -0.69
USP28-208ENST00000540438 TRBV7-6A0A0J9YX20 115 aa10.72□□□□□ -0.69
USP28-208ENST00000540438 REG3GQ6UW15 175 aa10.71□□□□□ -0.69
USP28-208ENST00000540438 CRYGAP11844 174 aa10.71□□□□□ -0.7
USP28-208ENST00000540438 TLX1NBP0CAT3 122 aa10.7□□□□□ -0.7
USP28-208ENST00000540438 ATP5EP2Q5VTU8 51 aa10.7□□□□□ -0.7
USP28-208ENST00000540438 APLNQ9ULZ1 77 aa10.7□□□□□ -0.7
USP28-208ENST00000540438 PDE6GP18545 87 aa10.68□□□□□ -0.7
USP28-208ENST00000540438 DHRS4-AS1Q9P1J3 65 aa10.66□□□□□ -0.7
USP28-208ENST00000540438 PRYO14603 147 aa10.66□□□□□ -0.7
USP28-208ENST00000540438 SPRR1AP35321 89 aa10.63□□□□□ -0.71
USP28-208ENST00000540438 LINC00476Q8WZB0 136 aa10.63□□□□□ -0.71
USP28-208ENST00000540438 FAM30AQ9NZY2 134 aa10.63□□□□□ -0.71
USP28-208ENST00000540438 FRAS1Q86XX4 4008 aa10.62□□□□□ -0.71
USP28-208ENST00000540438 IGKV4-1P06312 121 aa10.62□□□□□ -0.71
USP28-208ENST00000540438 OXTP01178 125 aa10.62□□□□□ -0.71
USP28-208ENST00000540438 C16orf90A8MZG2 172 aa10.61□□□□□ -0.71
USP28-208ENST00000540438 CXCL6P80162 114 aa10.61□□□□□ -0.71
USP28-208ENST00000540438 FBN3Q75N90 2809 aa10.61□□□□□ -0.71
USP28-208ENST00000540438 RPL37AP61513 92 aaKnown RBP10.61□□□□□ -0.71
USP28-208ENST00000540438 SMIM29Q86T20 159 aa10.6□□□□□ -0.71
USP28-208ENST00000540438 IGLV5-48A0A075B6I7 105 aa10.6□□□□□ -0.71
USP28-208ENST00000540438 F8WDY8 70 aa10.59□□□□□ -0.71
USP28-208ENST00000540438 PLA2G2DQ9UNK4 145 aa10.59□□□□□ -0.71
USP28-208ENST00000540438 EPM2AB3EWF7 344 aa10.59□□□□□ -0.71
USP28-208ENST00000540438 A0A087WSZ3 146 aa10.58□□□□□ -0.72
USP28-208ENST00000540438 H3BQ85 93 aa10.58□□□□□ -0.72
USP28-208ENST00000540438 IGLV5-37A0A075B6J1 123 aa10.57□□□□□ -0.72
USP28-208ENST00000540438 NBDYA0A0U1RRE5 68 aa10.57□□□□□ -0.72
USP28-208ENST00000540438 K7EQZ3 153 aa10.57□□□□□ -0.72
USP28-208ENST00000540438 F8WEM9 126 aa10.57□□□□□ -0.72
USP28-208ENST00000540438 IGFL1Q6UW32 110 aa10.57□□□□□ -0.72
USP28-208ENST00000540438 TRAV7A0A075B6U4 112 aa10.56□□□□□ -0.72
USP28-208ENST00000540438 B9D2Q9BPU9 175 aa10.56□□□□□ -0.72
USP28-208ENST00000540438 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.56□□□□□ -0.72
USP28-208ENST00000540438 HRCT1Q6UXD1 115 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms