RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 TRBV7-6A0A0J9YX20 115 aa13.35□□□□□ -0.27
TMEM260-203ENST00000539559 NREPQ16612 68 aa13.35□□□□□ -0.27
TMEM260-203ENST00000539559 KPRPQ5T749 579 aaPredicted RBP13.35□□□□□ -0.27
TMEM260-203ENST00000539559 SERP1Q9Y6X1 66 aa13.34□□□□□ -0.27
TMEM260-203ENST00000539559 H3BQ85 93 aa13.33□□□□□ -0.28
TMEM260-203ENST00000539559 EGFEM1PQ0D2K5 195 aa13.33□□□□□ -0.28
TMEM260-203ENST00000539559 BAHCC1Q9P281 2608 aa13.31□□□□□ -0.28
TMEM260-203ENST00000539559 KRTAP10-11P60412 298 aa13.31□□□□□ -0.28
TMEM260-203ENST00000539559 TENM3Q9P273 2699 aa13.31□□□□□ -0.28
TMEM260-203ENST00000539559 FBN1P35555 2871 aaKnown RBP13.3□□□□□ -0.28
TMEM260-203ENST00000539559 Q6ZTC4 211 aa13.3□□□□□ -0.28
TMEM260-203ENST00000539559 EPM2AB3EWF7 344 aa13.29□□□□□ -0.28
TMEM260-203ENST00000539559 IGKV4-1P06312 121 aa13.29□□□□□ -0.28
TMEM260-203ENST00000539559 IGKV2D-24A0A075B6R9 120 aa13.28□□□□□ -0.28
TMEM260-203ENST00000539559 SERTAD4-AS1Q5TG53 156 aa13.28□□□□□ -0.28
TMEM260-203ENST00000539559 LINC00474Q9P2X8 69 aa13.28□□□□□ -0.28
TMEM260-203ENST00000539559 ESRGQ1W209 222 aa13.27□□□□□ -0.28
TMEM260-203ENST00000539559 TMEM254Q8TBM7 123 aa13.27□□□□□ -0.29
TMEM260-203ENST00000539559 FP248Q71RG6 208 aaPredicted RBP13.26□□□□□ -0.29
TMEM260-203ENST00000539559 STAB1Q9NY15 2570 aa13.26□□□□□ -0.29
TMEM260-203ENST00000539559 C1orf43Q9BWL3 253 aa13.25□□□□□ -0.29
TMEM260-203ENST00000539559 RPL37AP8A6NKH3 93 aa13.24□□□□□ -0.29
TMEM260-203ENST00000539559 Q8N377 158 aa13.24□□□□□ -0.29
TMEM260-203ENST00000539559 C7orf33Q8WU49 177 aa13.23□□□□□ -0.29
TMEM260-203ENST00000539559 LINC00336Q6ZUF6 198 aa13.22□□□□□ -0.29
TMEM260-203ENST00000539559 NKAPP1Q8N9T2 125 aa13.22□□□□□ -0.29
TMEM260-203ENST00000539559 MAST4O15021 2626 aa13.21□□□□□ -0.29
TMEM260-203ENST00000539559 SYCNQ0VAF6 134 aa13.21□□□□□ -0.29
TMEM260-203ENST00000539559 FAM168BA1KXE4 195 aa13.21□□□□□ -0.3
TMEM260-203ENST00000539559 ANK2Q01484 3957 aa13.19□□□□□ -0.3
TMEM260-203ENST00000539559 OCR1Q9BZK8 76 aa13.18□□□□□ -0.3
TMEM260-203ENST00000539559 ST20-AS1Q8NBB2 130 aa13.18□□□□□ -0.3
TMEM260-203ENST00000539559 HIGD2AQ9BW72 106 aa13.18□□□□□ -0.3
TMEM260-203ENST00000539559 FAM229BQ4G0N7 80 aa13.17□□□□□ -0.3
TMEM260-203ENST00000539559 KCNQ1DNQ9H478 68 aa13.16□□□□□ -0.3
TMEM260-203ENST00000539559 FAM30AQ9NZY2 134 aa13.16□□□□□ -0.3
TMEM260-203ENST00000539559 SMIM26A0A096LP01 95 aa13.16□□□□□ -0.3
TMEM260-203ENST00000539559 NDUFC1O43677 76 aa13.15□□□□□ -0.3
TMEM260-203ENST00000539559 Q9BRP9 147 aa13.15□□□□□ -0.31
TMEM260-203ENST00000539559 A0A1W2PNM2 257 aa13.14□□□□□ -0.31
TMEM260-203ENST00000539559 SMIM29Q86T20 159 aa13.14□□□□□ -0.31
TMEM260-203ENST00000539559 CASC10Q5T4H9 136 aa13.13□□□□□ -0.31
TMEM260-203ENST00000539559 COL6A5A8TX70 2615 aa13.13□□□□□ -0.31
TMEM260-203ENST00000539559 PRYO14603 147 aa13.13□□□□□ -0.31
TMEM260-203ENST00000539559 A0A0U1RQV1 116 aa13.12□□□□□ -0.31
TMEM260-203ENST00000539559 MPLKIPQ8TAP9 179 aa13.11□□□□□ -0.31
TMEM260-203ENST00000539559 IGLV5-48A0A075B6I7 105 aa13.1□□□□□ -0.31
TMEM260-203ENST00000539559 A0A0G2JQZ4 141 aa13.1□□□□□ -0.31
TMEM260-203ENST00000539559 A0A1W2PNN7 141 aa13.1□□□□□ -0.31
TMEM260-203ENST00000539559 ERC2-IT1O76042 136 aa13.09□□□□□ -0.31
TMEM260-203ENST00000539559 DEFB131BA0A096LNP1 70 aa13.08□□□□□ -0.31
TMEM260-203ENST00000539559 H3BNG1 76 aa13.08□□□□□ -0.31
TMEM260-203ENST00000539559 LINC01556Q5JQF7 62 aa13.08□□□□□ -0.31
TMEM260-203ENST00000539559 Q6ZRX8 168 aa13.08□□□□□ -0.31
TMEM260-203ENST00000539559 FUSP35637 526 aaKnown RBP eCLIP13.08□□□□□ -0.32
TMEM260-203ENST00000539559 C1orf137Q5JT78 98 aa13.08□□□□□ -0.32
TMEM260-203ENST00000539559 KRTAP7-1Q8IUC3 87 aa13.06□□□□□ -0.32
TMEM260-203ENST00000539559 ETDCA0A1B0GVM5 59 aa13.06□□□□□ -0.32
TMEM260-203ENST00000539559 CMYA5Q8N3K9 4069 aa13.04□□□□□ -0.32
TMEM260-203ENST00000539559 KRTAP4-16G5E9R7 235 aaPredicted RBP13.04□□□□□ -0.32
TMEM260-203ENST00000539559 IGLV1-50A0A075B6I6 118 aa13.03□□□□□ -0.32
TMEM260-203ENST00000539559 ATP5EP56381 51 aaPredicted RBP13.03□□□□□ -0.32
TMEM260-203ENST00000539559 DHRS4-AS1Q9P1J3 65 aa13.02□□□□□ -0.32
TMEM260-203ENST00000539559 NOTCH1P46531 2555 aa13.01□□□□□ -0.33
TMEM260-203ENST00000539559 TNP2Q05952 138 aa13.01□□□□□ -0.33
TMEM260-203ENST00000539559 LRCOL1A6NCL2 159 aa13.01□□□□□ -0.33
TMEM260-203ENST00000539559 K7EQZ3 153 aa13.01□□□□□ -0.33
TMEM260-203ENST00000539559 PRB2P02812 416 aaPredicted RBP13□□□□□ -0.33
TMEM260-203ENST00000539559 UBE2BP63146 152 aa13□□□□□ -0.33
TMEM260-203ENST00000539559 C11orf45Q8TAV5 145 aa13□□□□□ -0.33
TMEM260-203ENST00000539559 PRO0628Q9UI54 55 aa13□□□□□ -0.33
TMEM260-203ENST00000539559 DSCR10P59022 87 aa12.99□□□□□ -0.33
TMEM260-203ENST00000539559 DEFB116Q30KQ4 102 aa12.99□□□□□ -0.33
TMEM260-203ENST00000539559 Q8NBF4 154 aa12.99□□□□□ -0.33
TMEM260-203ENST00000539559 BRK1Q8WUW1 75 aa12.97□□□□□ -0.33
TMEM260-203ENST00000539559 MRAPQ8TCY5 172 aa12.96□□□□□ -0.33
TMEM260-203ENST00000539559 SPRR1AP35321 89 aa12.96□□□□□ -0.34
TMEM260-203ENST00000539559 DNAH10OSP0CZ25 163 aa12.95□□□□□ -0.34
TMEM260-203ENST00000539559 DNAH3Q8TD57 4116 aa12.95□□□□□ -0.34
TMEM260-203ENST00000539559 K7EIL1 84 aa12.95□□□□□ -0.34
TMEM260-203ENST00000539559 PKIGQ9Y2B9 76 aa12.95□□□□□ -0.34
TMEM260-203ENST00000539559 TLX1NBP0CAT3 122 aa12.94□□□□□ -0.34
TMEM260-203ENST00000539559 MRPL55Q7Z7F7 128 aaKnown RBP12.94□□□□□ -0.34
TMEM260-203ENST00000539559 LINC00588Q9Y4M8 146 aa12.94□□□□□ -0.34
TMEM260-203ENST00000539559 F8WDY8 70 aa12.93□□□□□ -0.34
TMEM260-203ENST00000539559 PRR4Q16378 134 aa12.93□□□□□ -0.34
TMEM260-203ENST00000539559 NBEAL1Q6ZS30 2694 aa12.92□□□□□ -0.34
TMEM260-203ENST00000539559 SRRM2Q9UQ35 2752 aaKnown RBP12.91□□□□□ -0.34
TMEM260-203ENST00000539559 PLA2G2DQ9UNK4 145 aa12.91□□□□□ -0.34
TMEM260-203ENST00000539559 SPRR4Q96PI1 79 aa12.91□□□□□ -0.34
TMEM260-203ENST00000539559 LINC00476Q8WZB0 136 aa12.9□□□□□ -0.34
TMEM260-203ENST00000539559 IGLV5-37A0A075B6J1 123 aa12.87□□□□□ -0.35
TMEM260-203ENST00000539559 PRLHP81277 87 aa12.87□□□□□ -0.35
TMEM260-203ENST00000539559 MDFIQ99750 246 aa12.87□□□□□ -0.35
TMEM260-203ENST00000539559 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.86□□□□□ -0.35
TMEM260-203ENST00000539559 MGAM2Q2M2H8 2515 aa12.86□□□□□ -0.35
TMEM260-203ENST00000539559 REG3GQ6UW15 175 aa12.85□□□□□ -0.35
TMEM260-203ENST00000539559 WFDC13Q8IUB5 93 aa12.85□□□□□ -0.35
TMEM260-203ENST00000539559 IGKV2-24A0A0C4DH68 120 aa12.85□□□□□ -0.35
TMEM260-203ENST00000539559 PSCAO43653 123 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms