RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 HSBP1O75506 76 aa7.38□□□□□ -1.23
SS18-204ENST00000539244 SPRR1BP22528 89 aa7.38□□□□□ -1.23
SS18-204ENST00000539244 ST20-AS1Q8NBB2 130 aa7.38□□□□□ -1.23
SS18-204ENST00000539244 YPEL4Q96NS1 127 aa7.38□□□□□ -1.23
SS18-204ENST00000539244 LIMD2Q9BT23 127 aa7.38□□□□□ -1.23
SS18-204ENST00000539244 IGLV8-61A0A075B6I0 122 aa7.37□□□□□ -1.23
SS18-204ENST00000539244 SNAPINO95295 136 aa7.37□□□□□ -1.23
SS18-204ENST00000539244 PLNP26678 52 aa7.37□□□□□ -1.23
SS18-204ENST00000539244 APOC3P02656 99 aa7.36□□□□□ -1.23
SS18-204ENST00000539244 LORP23490 312 aaPredicted RBP7.36□□□□□ -1.23
SS18-204ENST00000539244 SOSTDC1Q6X4U4 206 aa7.36□□□□□ -1.23
SS18-204ENST00000539244 H0Y8G0 127 aa7.35□□□□□ -1.23
SS18-204ENST00000539244 SVBPQ8N300 66 aa7.35□□□□□ -1.23
SS18-204ENST00000539244 CBY1Q9Y3M2 126 aa7.35□□□□□ -1.23
SS18-204ENST00000539244 EIF4EBP3O60516 100 aaPredicted RBP7.34□□□□□ -1.23
SS18-204ENST00000539244 LEPROTL1O95214 131 aa7.34□□□□□ -1.23
SS18-204ENST00000539244 LGALS3P17931 250 aaKnown RBP7.34□□□□□ -1.23
SS18-204ENST00000539244 HERVK_113P61574 105 aa7.34□□□□□ -1.23
SS18-204ENST00000539244 SLC25A34Q6PIV7 304 aa7.34□□□□□ -1.23
SS18-204ENST00000539244 DPM2O94777 84 aa7.33□□□□□ -1.24
SS18-204ENST00000539244 HINT1P49773 126 aaPredicted RBP7.33□□□□□ -1.24
SS18-204ENST00000539244 KRTAP10-6P60371 365 aaPredicted RBP7.33□□□□□ -1.24
SS18-204ENST00000539244 C9orf92A6NGG3 77 aa7.32□□□□□ -1.24
SS18-204ENST00000539244 LINC00310P59036 64 aa7.32□□□□□ -1.24
SS18-204ENST00000539244 NDUFA5Q16718 116 aa7.32□□□□□ -1.24
SS18-204ENST00000539244 ADAMTSL4-AS1Q5T5F5 129 aa7.32□□□□□ -1.24
SS18-204ENST00000539244 A0A0J9YXY3 114 aa7.31□□□□□ -1.24
SS18-204ENST00000539244 IGKCP01834 107 aa7.31□□□□□ -1.24
SS18-204ENST00000539244 CD164Q04900 197 aa7.31□□□□□ -1.24
SS18-204ENST00000539244 DHRS4-AS1Q9P1J3 65 aa7.31□□□□□ -1.24
SS18-204ENST00000539244 NPC2P61916 151 aa7.3□□□□□ -1.24
SS18-204ENST00000539244 HRCT1Q6UXD1 115 aa7.3□□□□□ -1.24
SS18-204ENST00000539244 LAMTOR3Q9UHA4 124 aa7.3□□□□□ -1.24
SS18-204ENST00000539244 HSPB8Q9UJY1 196 aa7.3□□□□□ -1.24
SS18-204ENST00000539244 FLGP20930 4061 aaPredicted RBP7.29□□□□□ -1.24
SS18-204ENST00000539244 SERF1AO75920 110 aa7.29□□□□□ -1.24
SS18-204ENST00000539244 Q5XG85 94 aa7.29□□□□□ -1.24
SS18-204ENST00000539244 PMCHL2Q9BQD1 86 aa7.28□□□□□ -1.24
SS18-204ENST00000539244 SPANXCQ9NY87 97 aa7.28□□□□□ -1.24
SS18-204ENST00000539244 E9PLD3 99 aa7.27□□□□□ -1.25
SS18-204ENST00000539244 TRGC2P03986 189 aa7.26□□□□□ -1.25
SS18-204ENST00000539244 ELOF1P60002 83 aaKnown RBP7.26□□□□□ -1.25
SS18-204ENST00000539244 LINC00308Q8TCZ7 52 aa7.26□□□□□ -1.25
SS18-204ENST00000539244 LITAFQ99732 161 aa7.26□□□□□ -1.25
SS18-204ENST00000539244 FABP4P15090 132 aa7.25□□□□□ -1.25
SS18-204ENST00000539244 OR13C6PQ8NH95 151 aa7.25□□□□□ -1.25
SS18-204ENST00000539244 SPANXDQ9BXN6 97 aa7.25□□□□□ -1.25
SS18-204ENST00000539244 PRO1933Q9H354 126 aa7.25□□□□□ -1.25
SS18-204ENST00000539244 TIMM17BO60830 172 aa7.24□□□□□ -1.25
SS18-204ENST00000539244 RPL37P61927 97 aaKnown RBP7.24□□□□□ -1.25
SS18-204ENST00000539244 H7C2G1 150 aa7.23□□□□□ -1.25
SS18-204ENST00000539244 Q1RN00 199 aa7.23□□□□□ -1.25
SS18-204ENST00000539244 C1orf195Q5TG92 126 aa7.23□□□□□ -1.25
SS18-204ENST00000539244 TEX49A0A1B0GTD5 131 aa7.22□□□□□ -1.25
SS18-204ENST00000539244 COX7BP24311 80 aa7.22□□□□□ -1.25
SS18-204ENST00000539244 TAL2Q16559 108 aa7.22□□□□□ -1.25
SS18-204ENST00000539244 M0R2T5 61 aa7.21□□□□□ -1.26
SS18-204ENST00000539244 AKR1D1P51857 326 aa7.21□□□□□ -1.26
SS18-204ENST00000539244 C6orf99Q4VX62 202 aa7.21□□□□□ -1.26
SS18-204ENST00000539244 SMIM29Q86T20 159 aa7.21□□□□□ -1.26
SS18-204ENST00000539244 TRBV7-6A0A0J9YX20 115 aa7.2□□□□□ -1.26
SS18-204ENST00000539244 LINC00518Q8N0U6 118 aa7.2□□□□□ -1.26
SS18-204ENST00000539244 COX6B2Q6YFQ2 88 aa7.19□□□□□ -1.26
SS18-204ENST00000539244 DEFB105AQ8NG35 78 aa7.19□□□□□ -1.26
SS18-204ENST00000539244 IGLV5-48A0A075B6I7 105 aa7.18□□□□□ -1.26
SS18-204ENST00000539244 A0A1B0GWB2 263 aa7.16□□□□□ -1.26
SS18-204ENST00000539244 SYS1-DBNDD2H3BUS1 97 aa7.16□□□□□ -1.26
SS18-204ENST00000539244 ZNF815PA8K554 130 aa7.15□□□□□ -1.26
SS18-204ENST00000539244 A0A0G2JQZ4 141 aa7.14□□□□□ -1.27
SS18-204ENST00000539244 LINC01545Q5VT33 79 aa7.14□□□□□ -1.27
SS18-204ENST00000539244 TCL1BO95988 128 aa7.12□□□□□ -1.27
SS18-204ENST00000539244 TTTY13Q9BZ97 58 aa7.12□□□□□ -1.27
SS18-204ENST00000539244 A4D1N5 150 aa7.11□□□□□ -1.27
SS18-204ENST00000539244 COLCA2A8K830 154 aa7.11□□□□□ -1.27
SS18-204ENST00000539244 SMCPP49901 116 aaPredicted RBP7.11□□□□□ -1.27
SS18-204ENST00000539244 PET117Q6UWS5 81 aa7.1□□□□□ -1.27
SS18-204ENST00000539244 COPS9Q8WXC6 57 aa7.09□□□□□ -1.27
SS18-204ENST00000539244 IFITM1P13164 125 aa7.08□□□□□ -1.28
SS18-204ENST00000539244 NHP2Q9NX24 153 aaKnown RBP7.08□□□□□ -1.28
SS18-204ENST00000539244 A6NDN8 102 aa7.06□□□□□ -1.28
SS18-204ENST00000539244 SCGB1D4Q6XE38 83 aa7.06□□□□□ -1.28
SS18-204ENST00000539244 Q6ZVH6 145 aa7.06□□□□□ -1.28
SS18-204ENST00000539244 Q75L30 129 aa7.05□□□□□ -1.28
SS18-204ENST00000539244 HIST1H2BKO60814 126 aa7.04□□□□□ -1.28
SS18-204ENST00000539244 HIST1H2BJP06899 126 aa7.04□□□□□ -1.28
SS18-204ENST00000539244 HIST1H2BOP23527 126 aa7.04□□□□□ -1.28
SS18-204ENST00000539244 HIST1H2BBP33778 126 aa7.04□□□□□ -1.28
SS18-204ENST00000539244 HIST1H2BDP58876 126 aa7.04□□□□□ -1.28
SS18-204ENST00000539244 HIST1H2BCP62807 126 aa7.04□□□□□ -1.28
SS18-204ENST00000539244 HIST2H2BEQ16778 126 aa7.04□□□□□ -1.28
SS18-204ENST00000539244 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.04□□□□□ -1.28
SS18-204ENST00000539244 HIST1H2BHQ93079 126 aa7.04□□□□□ -1.28
SS18-204ENST00000539244 HIST1H2BNQ99877 126 aa7.04□□□□□ -1.28
SS18-204ENST00000539244 HIST1H2BMQ99879 126 aa7.04□□□□□ -1.28
SS18-204ENST00000539244 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.03□□□□□ -1.28
SS18-204ENST00000539244 C3orf79P0CE67 100 aa7.03□□□□□ -1.28
SS18-204ENST00000539244 ATP11AUNQ6ZP68 121 aa7.03□□□□□ -1.28
SS18-204ENST00000539244 SMIM11BQ8TCY0 68 aa7.03□□□□□ -1.28
SS18-204ENST00000539244 TRAV13-2A0A0B4J235 113 aa7.02□□□□□ -1.29
SS18-204ENST00000539244 TRBV7-7A0A0K0K1E9 115 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms