RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 PRB2P02812 416 aaPredicted RBP4.35□□□□□ -1.71
USP28-206ENST00000538224 C14orf177Q52M58 125 aa4.35□□□□□ -1.71
USP28-206ENST00000538224 DSCR8Q96T75 97 aa4.35□□□□□ -1.71
USP28-206ENST00000538224 B9D2Q9BPU9 175 aa4.35□□□□□ -1.71
USP28-206ENST00000538224 UBL5Q9BZL1 73 aa4.35□□□□□ -1.71
USP28-206ENST00000538224 KCNQ1DNQ9H478 68 aa4.35□□□□□ -1.71
USP28-206ENST00000538224 NBEAL1Q6ZS30 2694 aa4.35□□□□□ -1.71
USP28-206ENST00000538224 NOTCH1P46531 2555 aa4.34□□□□□ -1.71
USP28-206ENST00000538224 FAM236AA0A1B0GUQ0 79 aa4.34□□□□□ -1.71
USP28-206ENST00000538224 FAM236BA0A1B0GV22 79 aa4.34□□□□□ -1.71
USP28-206ENST00000538224 C9orf129Q5T035 196 aaKnown RBP4.34□□□□□ -1.71
USP28-206ENST00000538224 UBE2DNLQ8IWF7 75 aa4.34□□□□□ -1.71
USP28-206ENST00000538224 LINC00528Q8N1L1 170 aa4.34□□□□□ -1.71
USP28-206ENST00000538224 HUWE1Q7Z6Z7 4374 aaKnown RBP4.34□□□□□ -1.72
USP28-206ENST00000538224 NUPR2A6NF83 97 aa4.33□□□□□ -1.72
USP28-206ENST00000538224 ATOX1O00244 68 aa4.33□□□□□ -1.72
USP28-206ENST00000538224 COX7CP15954 63 aa4.33□□□□□ -1.72
USP28-206ENST00000538224 Q6ZQT0 140 aa4.33□□□□□ -1.72
USP28-206ENST00000538224 LINC00846Q9NV44 126 aa4.33□□□□□ -1.72
USP28-206ENST00000538224 DHRS4-AS1Q9P1J3 65 aa4.33□□□□□ -1.72
USP28-206ENST00000538224 V9GYY9 64 aa4.33□□□□□ -1.72
USP28-206ENST00000538224 C7orf33Q8WU49 177 aa4.32□□□□□ -1.72
USP28-206ENST00000538224 DPH3Q96FX2 82 aa4.32□□□□□ -1.72
USP28-206ENST00000538224 TRBV7-4A0A0J9YYF1 115 aa4.31□□□□□ -1.72
USP28-206ENST00000538224 ETDCA0A1B0GVM5 59 aa4.31□□□□□ -1.72
USP28-206ENST00000538224 PSCAO43653 123 aa4.31□□□□□ -1.72
USP28-206ENST00000538224 CNBPP62633 177 aaKnown RBP4.31□□□□□ -1.72
USP28-206ENST00000538224 HIST1H4AP62805 103 aaKnown RBP4.31□□□□□ -1.72
USP28-206ENST00000538224 Q5XG85 94 aa4.31□□□□□ -1.72
USP28-206ENST00000538224 APLNQ9ULZ1 77 aa4.31□□□□□ -1.72
USP28-206ENST00000538224 DNAH1Q9P2D7 4330 aa4.31□□□□□ -1.72
USP28-206ENST00000538224 IGLV1-50A0A075B6I6 118 aa4.3□□□□□ -1.72
USP28-206ENST00000538224 A0A1B0GW54 56 aa4.3□□□□□ -1.72
USP28-206ENST00000538224 SPRR1AP35321 89 aa4.3□□□□□ -1.72
USP28-206ENST00000538224 SERTAD4-AS1Q5TG53 156 aa4.3□□□□□ -1.72
USP28-206ENST00000538224 Q6ZRX8 168 aa4.3□□□□□ -1.72
USP28-206ENST00000538224 MRPL55Q7Z7F7 128 aaKnown RBP4.3□□□□□ -1.72
USP28-206ENST00000538224 IGKV3D-7A0A0C4DH55 119 aa4.28□□□□□ -1.72
USP28-206ENST00000538224 C16orf90A8MZG2 172 aa4.28□□□□□ -1.72
USP28-206ENST00000538224 KRTAP4-16G5E9R7 235 aaPredicted RBP4.28□□□□□ -1.72
USP28-206ENST00000538224 CXCL6P80162 114 aa4.28□□□□□ -1.72
USP28-206ENST00000538224 CASC10Q5T4H9 136 aa4.28□□□□□ -1.72
USP28-206ENST00000538224 HRCT1Q6UXD1 115 aa4.28□□□□□ -1.72
USP28-206ENST00000538224 DNAH9Q9NYC9 4486 aa4.28□□□□□ -1.72
USP28-206ENST00000538224 DYNC2H1Q8NCM8 4307 aaKnown RBP4.27□□□□□ -1.73
USP28-206ENST00000538224 EPM2AB3EWF7 344 aa4.27□□□□□ -1.73
USP28-206ENST00000538224 BCE1O60756 84 aa4.27□□□□□ -1.73
USP28-206ENST00000538224 C4orf26Q17RF5 130 aa4.27□□□□□ -1.73
USP28-206ENST00000538224 REG3GQ6UW15 175 aa4.27□□□□□ -1.73
USP28-206ENST00000538224 LINC00474Q9P2X8 69 aa4.27□□□□□ -1.73
USP28-206ENST00000538224 MGAM2Q2M2H8 2515 aa4.27□□□□□ -1.73
USP28-206ENST00000538224 IGLV5-48A0A075B6I7 105 aa4.26□□□□□ -1.73
USP28-206ENST00000538224 Q6ZVQ6 151 aa4.26□□□□□ -1.73
USP28-206ENST00000538224 MDFIQ99750 246 aa4.26□□□□□ -1.73
USP28-206ENST00000538224 COL7A1Q02388 2944 aa4.25□□□□□ -1.73
USP28-206ENST00000538224 STAB2Q8WWQ8 2551 aa4.25□□□□□ -1.73
USP28-206ENST00000538224 NBDYA0A0U1RRE5 68 aa4.25□□□□□ -1.73
USP28-206ENST00000538224 FAM168BA1KXE4 195 aa4.25□□□□□ -1.73
USP28-206ENST00000538224 RPL37AP8A6NKH3 93 aa4.25□□□□□ -1.73
USP28-206ENST00000538224 FUSP35637 526 aaKnown RBP eCLIP4.25□□□□□ -1.73
USP28-206ENST00000538224 LINC01547P58512 204 aaPredicted RBP4.25□□□□□ -1.73
USP28-206ENST00000538224 UBE2BP63146 152 aa4.25□□□□□ -1.73
USP28-206ENST00000538224 C1orf195Q5TG92 126 aa4.25□□□□□ -1.73
USP28-206ENST00000538224 SERP2Q8N6R1 65 aa4.25□□□□□ -1.73
USP28-206ENST00000538224 KRTAP1-5Q9BYS1 174 aa4.25□□□□□ -1.73
USP28-206ENST00000538224 A0A096LNI7 61 aa4.24□□□□□ -1.73
USP28-206ENST00000538224 F8WEM9 126 aa4.24□□□□□ -1.73
USP28-206ENST00000538224 Q8N377 158 aa4.24□□□□□ -1.73
USP28-206ENST00000538224 HAMPP81172 84 aa4.23□□□□□ -1.73
USP28-206ENST00000538224 KRTAP7-1Q8IUC3 87 aa4.23□□□□□ -1.73
USP28-206ENST00000538224 C9orf163Q8N9P6 203 aa4.23□□□□□ -1.73
USP28-206ENST00000538224 Q9BRP9 147 aa4.23□□□□□ -1.73
USP28-206ENST00000538224 SERP1Q9Y6X1 66 aa4.23□□□□□ -1.73
USP28-206ENST00000538224 A0A087WVE0 104 aa4.22□□□□□ -1.73
USP28-206ENST00000538224 IGKV2-24A0A0C4DH68 120 aa4.22□□□□□ -1.73
USP28-206ENST00000538224 H0Y9J4 135 aa4.22□□□□□ -1.73
USP28-206ENST00000538224 OXTP01178 125 aa4.22□□□□□ -1.73
USP28-206ENST00000538224 NREPQ16612 68 aa4.22□□□□□ -1.73
USP28-206ENST00000538224 LINC00336Q6ZUF6 198 aa4.22□□□□□ -1.73
USP28-206ENST00000538224 DEFB105AQ8NG35 78 aa4.22□□□□□ -1.73
USP28-206ENST00000538224 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.21□□□□□ -1.74
USP28-206ENST00000538224 M0R2N4 97 aa4.21□□□□□ -1.74
USP28-206ENST00000538224 TNP2Q05952 138 aa4.21□□□□□ -1.74
USP28-206ENST00000538224 C1orf137Q5JT78 98 aa4.21□□□□□ -1.74
USP28-206ENST00000538224 FAM19A1Q7Z5A9 133 aa4.21□□□□□ -1.74
USP28-206ENST00000538224 SMIM26A0A096LP01 95 aa4.2□□□□□ -1.74
USP28-206ENST00000538224 LRCOL1A6NCL2 159 aa4.2□□□□□ -1.74
USP28-206ENST00000538224 Q6ZRN7 208 aaPredicted RBP4.2□□□□□ -1.74
USP28-206ENST00000538224 Q8NBF4 154 aa4.2□□□□□ -1.74
USP28-206ENST00000538224 TRAV7A0A075B6U4 112 aa4.19□□□□□ -1.74
USP28-206ENST00000538224 A0A1W2PNN7 141 aa4.19□□□□□ -1.74
USP28-206ENST00000538224 BPY2O14599 106 aa4.19□□□□□ -1.74
USP28-206ENST00000538224 SPRR4Q96PI1 79 aa4.19□□□□□ -1.74
USP28-206ENST00000538224 IGLV8-61A0A075B6I0 122 aa4.18□□□□□ -1.74
USP28-206ENST00000538224 FAM236DA0A1B0GTK5 79 aa4.18□□□□□ -1.74
USP28-206ENST00000538224 FAM236CP0DP71 79 aa4.18□□□□□ -1.74
USP28-206ENST00000538224 ST20-AS1Q8NBB2 130 aa4.18□□□□□ -1.74
USP28-206ENST00000538224 VPS13DQ5THJ4 4388 aa4.18□□□□□ -1.74
USP28-206ENST00000538224 PLECQ15149 4684 aaKnown RBP4.17□□□□□ -1.74
USP28-206ENST00000538224 C3orf84H3BNL1 204 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms